mRNA_F-serratus_M_contig1430.3093.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: D8LPW4_ECTSI (Phosphatidate cytidylyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW4_ECTSI) HSP 1 Score: 328 bits (841), Expect = 2.630e-104 Identity = 202/375 (53.87%), Postives = 247/375 (65.87%), Query Frame = 3
Query: 207 MGLRERFLTAGVAIPLALWAIFFDSFSCLALILGLQAICIHELVELLRKTRPARTLVAAGVHPF---SSSLFHTIGLAVCSASAFGGRDLSAIALSVGVAALVVRRLMLMRRHQRVALDAA----------------GDGASVIASGVFLLTLEASAVVWVVGGWSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRA--------RPSLSASPSTAAKAA---PSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSR---LVFSLEALSSEES----FSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLYLAVV 1220
MGLRERFLTA VA+PLALWAIF D++ CL+L+L LQA+C+ E+ ELLR+TR AR + A GV S+ LFH I V +AF GRD + IA+ VG+A +V RRL+LMR H + +A A V+ +GVFLL LE SA++W+V G SSLV LRF G GAAD+V LLA+VFNSDNGGL AGS++K LRR+ L + R S S +P AA AA P P +L +ASP KTWVGVTG+I LGTATAL A+ FL L E+L EE FS+G M+ LG+ GAG+C++G+VGDLWESLLKR A VKDSG +FPGHGGCLDRLDGVL AAPLYLAV+
Sbjct: 1 MGLRERFLTAAVALPLALWAIFHDAWLCLSLVLVLQAVCVQEVGELLRRTRAARAIAATGVGVALLGSTFLFHVIAETVSLITAFCGRDAAGIAMCVGMALIVARRLVLMRDHWVASKLSAEKPVGVSGGXXXXXXXXXXAGVMEAGVFLLALEISAMLWMVCGCSSLVALRFRGSRGAADVVFLLAVVFNSDNGGLLAGSMYKVLRRKRQLHLSSSELLQRHQRSSASQTPPAAAGAAEMTPGQKHPGLLTVASPGKTWVGVTGSIALGTATALTLEQALLFLLHEPLLSRVGESLPGEEERGGVFSVGGMSSGRLGVVGAGLCIVGVVGDLWESLLKRTAMVKDSGTVFPGHGGCLDRLDGVLTAAPLYLAVL 375
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A2G2I7Y5_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2G2I7Y5_9GAMM) HSP 1 Score: 98.6 bits (244), Expect = 2.480e-19 Identity = 70/191 (36.65%), Postives = 98/191 (51.31%), Query Frame = 3
Query: 642 WSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLYLA 1214
W S V L S P GA L+ ++ +V+ +D GG FAG +R G+T A+ SPNKTW GV GA+ LG L++++ A + S SLG ++ WL ++ + ++ IVGDL+ESL KRA +KDSG L PGHGG LDR+D +LAA P++ A
Sbjct: 124 WHSAV-LLHSTPLGAQQLLYIMVLVWLADTGGYFAG-------KRWGKTKLAK------------------------AISPNKTWEGVAGAVVLG----------------LIWAVIAYAINLSGSLGLIS--WLVLSLVAL-LISIVGDLFESLFKRAHNIKDSGNLLPGHGGILDRIDSLLAAVPVFTA 263
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: UPI00105F8798 (phosphatidate cytidylyltransferase n=1 Tax=Lysobacter segetis TaxID=2492394 RepID=UPI00105F8798) HSP 1 Score: 97.1 bits (240), Expect = 9.590e-19 Identity = 72/199 (36.18%), Postives = 94/199 (47.24%), Query Frame = 3
Query: 612 ASAVVWVVGGWSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLY 1208
A+ + VV W +L L GP G L+ LA V+ +D G FAG RH + P + SPNKTW G+ G + +GT ALA FSL L+ + L K+A + A ++ +VGDL+ESLLKR A KDSG L PGHGG LDR+D VLAA P++
Sbjct: 121 AAGTLAVVPAWCALTWLHADGPNGHKWLLTSLAAVWAADTGAYFAG--------RHLGKHKLAPRV-----------------------SPNKTWEGLLGGVVVGTLVALA------------FSL--LADADPRDLPKVA-----VIAAASILVSVVGDLFESLLKRHAGKKDSGTLIPGHGGALDRIDAVLAALPVF 269
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A2G2LPS4_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2G2LPS4_9GAMM) HSP 1 Score: 95.9 bits (237), Expect = 2.180e-18 Identity = 70/191 (36.65%), Postives = 95/191 (49.74%), Query Frame = 3
Query: 642 WSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLYLA 1214
W S V L S P GA L+ ++ +V+ +D GG FAG +R G+T A+ SPNKTW GV GA+ LG ++ I + L +L +S WLG++ + ++ IVGDL+ESL KRA VKDSG L PGHGG LDR+D +LAA P++ A
Sbjct: 126 WHSAV-LLHSTPLGAQQLLYIMVLVWLADTGGYFAG-------KRWGKTKLAK------------------------AISPNKTWEGVAGAVFLGATWSI-----IGYALGLSGTLSLVS-------------WLGLSLLAL-LISIVGDLFESLFKRAHNVKDSGNLLPGHGGMLDRIDSLLAAVPVFTA 265
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A1S5Y093_9BACT (Phosphatidate cytidylyltransferase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1S5Y093_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 3.540e-18 Identity = 81/205 (39.51%), Postives = 98/205 (47.80%), Query Frame = 3
Query: 621 VVWVVGGWSSLVGLRFSGPTGAADLVVL-LAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVL-GIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLYLAVVGVL 1229
+V +V WSSLV LR SG D V+L LA+V+ +D+G AG RR GQ AR SP KTW G+ G + A+ G I F R SL LS V VL +VGDL+ESL+KR A VKDSGAL PGHGG LDR+D V AAAPL+ V+G+L
Sbjct: 127 IVVLVPAWSSLVLLR-SGTAPGGDFVLLFLALVWAADSGAYLAG-------RRWGQRKVARH------------------------VSPGKTWEGIYGGLAAALVVAIVGGQWIGFGWRTQVSLVLLSM--------------------VTVLFSVVGDLFESLVKRIAGVKDSGALLPGHGGVLDRIDSVTAAAPLF--VLGLL 277
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: U5T352_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Spiribacter curvatus TaxID=1335757 RepID=U5T352_9GAMM) HSP 1 Score: 94.7 bits (234), Expect = 5.740e-18 Identity = 73/207 (35.27%), Postives = 96/207 (46.38%), Query Frame = 3
Query: 627 WVVGG---------WSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLYLAVV 1220
W+ GG W+S+ + G L VL+ +V+ SD GG FAG RR+G+ K APS SP KTW GV G + L A LV +L A++ + + +WL G V +L +VGDL ES+LKR A KDSG L PGHGG LDR+D +LAAAP+ A +
Sbjct: 113 WLRGGAGLVTLTLAWASVASIHGQPGVGPFWLTVLVILVWGSDIGGYFAG-------RRYGRH---------------KLAPSI---------SPGKTWEGVAGGLALAIA--------------LVVALRAIA--DGYYTDLPGYSWLIAVGIMVALLSVVGDLSESVLKRQAGRKDSGRLLPGHGGMLDRIDALLAAAPVLAAAL 272
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A2G2MH19_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2G2MH19_9GAMM) HSP 1 Score: 94.0 bits (232), Expect = 9.620e-18 Identity = 69/189 (36.51%), Postives = 92/189 (48.68%), Query Frame = 3
Query: 642 WSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLY 1208
W S V L S P G L+ ++ +V+ +D GG FAG +R G+ A+ SPNKTW GV GA+ LG A G A+ L SL +S WLG++ + ++ IVGDL+ESL KRA +KDSG L PGHGG LDR+D +LAA P++
Sbjct: 124 WHSAV-LLHSAPLGGQQLLYIMVLVWLADTGGYFAG-------KRWGKIKLAK------------------------AISPNKTWEGVAGAVFLG-----AIGAXXAYALDLSGSLSLVS-------------WLGLSLIAL-LISIVGDLFESLFKRAHNIKDSGNLLPGHGGMLDRIDSLLAAVPVF 261
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A6N7QPZ6_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Spiribacter sp. C176 TaxID=2664894 RepID=A0A6N7QPZ6_9GAMM) HSP 1 Score: 93.2 bits (230), Expect = 2.300e-17 Identity = 72/200 (36.00%), Postives = 94/200 (47.00%), Query Frame = 3
Query: 630 VVGGWSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPL-YLAVVGV 1226
+V W +L G+ GP G L+VL ++V+ +D G F G RR G+ K AP + SP KTW GV G G TAL L L + + W + G V ++GDL+ESLLKR A VKDSGA+ PGHGG LDR+D +L AAPL Y+A++GV
Sbjct: 131 LVSAWLALTGVHNLGPEGPLWLLVLFSLVWGADIGAYFVG-------RRFGRH---------------KLAP---------LISPGKTWEGVLG----GIVTAL-----------LGMGLVIMVGWSRVDAPLPSMGWWLLAGLLVVGASVLGDLFESLLKRDAGVKDSGAILPGHGGVLDRVDALLPAAPLFYMALLGV 284
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A8K1C5S2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5S2_PYTOL) HSP 1 Score: 93.2 bits (230), Expect = 2.590e-17 Identity = 102/332 (30.72%), Postives = 140/332 (42.17%), Query Frame = 3
Query: 219 ERFLTAGVAIPLALWAIFFD-SFSCLALILGLQAICIHELVE----LLRKTRPARTLVAAGVHPFSSSLFHTIGLAVCSASAFGGRDLSAIALSVGVAALVVRRLMLMRRHQRVALDAAGDGASVIASGVFLLTLEASAVVWVVGGWSSLVGLRFSGPTGAADLVVLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAA 1199
R LT V IP AL + +D CLA +C+ L+E + R+ R+ V +L T+ AVC+ +A + + ++V V L L L+ R AL A + L+ A ++VV G+S + LR + P G A V+ L+ + D+G L AGS+F +++ PSI SP KT VG I T + ++ L A+S E LG + LG L I GDL ESLLKR A VKDSG FPGHGGCLDR+D L A
Sbjct: 10 RRLLTVCVGIPTALKLLQYDIGMWCLA-----TGLCLLALLEFATSITRRIVTPRSAVTCAGTTAHLALLLTLSGAVCTTAASYEKIMHDAVMTVSVFTLCCFHLALIERVDLHALMA--------------MLLDVFAFLYVVSGFSHAILLRNATPFGFAFQVLGLSCAWVCDSGALVAGSLFGSVKL---------------------------APSI----SPGKTLVGAIAGILSSAGTVVLFYKVPLWMGLAQQFLPAISLSEQIVLGLV----LGF-------LCIAGDLVESLLKRVADVKDSGTFFPGHGGCLDRMDSFLFVA 280
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Match: A0A5C8KR11_9GAMM (Phosphatidate cytidylyltransferase n=1 Tax=Lysobacter sp. Alg18-2.2 TaxID=2603204 RepID=A0A5C8KR11_9GAMM) HSP 1 Score: 92.8 bits (229), Expect = 2.670e-17 Identity = 80/231 (34.63%), Postives = 105/231 (45.45%), Query Frame = 3
Query: 555 AAGDGASVIASGVFLLTLEASAVVWVVGGWSSLVGLRFSGPTGAADLV------VLLAIVFNSDNGGLFAGSIFKALRRRHGQTLRARPSLSASPSTAAKAAPSADVPSILAIASPNKTWVGVTGAICLGTATALAAGPAIAFLSRLVFSLEALSSEESFSLGKMAPAWLGITGAGVCVLGIVGDLWESLLKRAATVKDSGALFPGHGGCLDRLDGVLAAAPLYLAVVGVL 1229
A+GDGA G LL L A ++ V+ W +L G+ +G G LV ++LA+++ SD G F G F RR+ + SPNKTW G G + L A LA P FL + L A++ + A VCV ++GDL+ESL+KR A KDSG L PGHGG DRLD VLAA P+ + V VL
Sbjct: 102 ASGDGA-----GPRLLKLLAGSLA-VIPAWVAL-GILHAGNPGEPALVGPGWALLVLAMIWASDTGAYFTGMRFG--RRKLSPRI-----------------------------SPNKTWEGFWGGMALSVAVGLAVAP---FLGVGLAQLPAMA----------------LLAAAVCVAAVIGDLFESLIKRHAGCKDSGTLIPGHGGVYDRLDSVLAALPVAVLVKAVL 275 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1430.3093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1430.3093.1 >prot_F-serratus_M_contig1430.3093.1 ID=prot_F-serratus_M_contig1430.3093.1|Name=mRNA_F-serratus_M_contig1430.3093.1|organism=Fucus serratus male|type=polypeptide|length=343bp MGLRERFLTAGVAIPLALWAIFFDSFSCLALILGLQAICIHELVELLRKTback to top mRNA from alignment at F-serratus_M_contig1430:146903..155256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1430.3093.1 ID=mRNA_F-serratus_M_contig1430.3093.1|Name=mRNA_F-serratus_M_contig1430.3093.1|organism=Fucus serratus male|type=mRNA|length=8354bp|location=Sequence derived from alignment at F-serratus_M_contig1430:146903..155256+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1430:146903..155256+ >mRNA_F-serratus_M_contig1430.3093.1 ID=mRNA_F-serratus_M_contig1430.3093.1|Name=mRNA_F-serratus_M_contig1430.3093.1|organism=Fucus serratus male|type=CDS|length=2058bp|location=Sequence derived from alignment at F-serratus_M_contig1430:146903..155256+ (Fucus serratus male)back to top |