mRNA_F-serratus_M_contig1430.3087.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1430.3087.1
Unique Name	mRNA_F-serratus_M_contig1430.3087.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1430.3087.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.490e-50
Identity = 84/120 (70.00%), Postives = 105/120 (87.50%), Query Frame = 3

Query:    3 DMVDVYVLEGFPLRGLVFHTLGKDLEEVSKVIEKCVTFLVEVDTPHTMLFSTGRAFLLPRQHLEEPPFAVVPGFPEVSGEILVTREEDFPKLTADQIFKWWRDHVSVDAEDFDRIVKSCI 362
            D ++V+VL+G+P+R LVFHTLGKDLE   + IEKCV+FLVE +TPHT++FSTGR F+LPRQHLEEPPFAVVPGFPEVSGE++VTRE+DF  +TADQI++WWRD V+VD+E FDRI   C+
Sbjct:  434 DSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCL 553

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BLAST of mRNA_F-serratus_M_contig1430.3087.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 6.240e-50
Identity = 84/120 (70.00%), Postives = 105/120 (87.50%), Query Frame = 3

Query:    3 DMVDVYVLEGFPLRGLVFHTLGKDLEEVSKVIEKCVTFLVEVDTPHTMLFSTGRAFLLPRQHLEEPPFAVVPGFPEVSGEILVTREEDFPKLTADQIFKWWRDHVSVDAEDFDRIVKSCI 362
            D ++V+VL+G+P+R LVFHTLGKDLE   + IEKCV+FLVE +TPHT++FSTGR F+LPRQHLEEPPFAVVPGFPEVSGE++VTRE+DF  +TADQI++WWRD V+VD+E FDRI   C+
Sbjct:  523 DSLEVHVLQGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEPPFAVVPGFPEVSGEVIVTREDDFHTITADQIYEWWRDKVAVDSEHFDRITDGCL 642

[Close]

BLAST of mRNA_F-serratus_M_contig1430.3087.1 vs. uniprot
Match: A0A7S2UVC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVC9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.890e-5
Identity = 21/59 (35.59%), Postives = 39/59 (66.10%), Query Frame = 3

Query:    9 VDVYVLEGFPLRGLVFHTLGKDLEEVSKVIEKCVTFLVEVDTPHTMLFSTGRAFLLPRQ 185
            V V+ +E +P++ LVF   G ++++ + V+ +CV  LVE + PH+++ +    F+LPRQ
Sbjct:   70 VQVFEVENYPIKSLVFKVEGVEVKKAASVVWRCVGALVEHNVPHSLVMNESHVFVLPRQ 128

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1430.3087.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1430.3087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G939_ECTSI	1.490e-50	70.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JG89_9PHAE	6.240e-50	70.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2UVC9_9STRA	8.890e-5	35.59	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1430	contig	F-serratus_M_contig1430:64985..66949 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	193.4
Seed ortholog evalue	6.3e-47
Seed eggNOG ortholog	2880.D7G939
Preferred name	GDPGP1
KEGG rclass	RC00002
KEGG ko	ko:K14190,ko:K15630
KEGG Reaction	R07678
KEGG Pathway	ko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG Module	M00114
Hectar predicted targeting category	other localisation
GOs	GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006950,GO:0006952,GO:0006979,GO:0008150,GO:0008152,GO:0008194,GO:0008905,GO:0008928,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010035,GO:0010193,GO:0010471,GO:0010472,GO:0010473,GO:0010474,GO:0010475,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016772,GO:0016779,GO:0019318,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033037,GO:0033554,GO:0035251,GO:0042221,GO:0042364,GO:0042493,GO:0042545,GO:0042742,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045229,GO:0046364,GO:0046394,GO:0046527,GO:0046677,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0070568,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0080046,GO:0080048,GO:0098542,GO:1901576,GO:1901700
EggNOG free text desc.	GDP-D-glucose phosphorylase activity
EggNOG OGs	KOG2720@1,KOG2720@2759
EC	2.7.7.69,2.7.7.78
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Exons	3
Model size	1524
Cds size	363
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1430.3087.1	prot_F-serratus_M_contig1430.3087.1	Fucus serratus male	polypeptide	F-serratus_M_contig1430 66141..66944 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929416.603477-UTR-F-serratus_M_contig1430:64984..66140	1622929416.603477-UTR-F-serratus_M_contig1430:64984..66140	Fucus serratus male	UTR	F-serratus_M_contig1430 64985..66140 -
1690962841.9311676-UTR-F-serratus_M_contig1430:64984..66140	1690962841.9311676-UTR-F-serratus_M_contig1430:64984..66140	Fucus serratus male	UTR	F-serratus_M_contig1430 64985..66140 -
1622929416.6788075-UTR-F-serratus_M_contig1430:66944..66949	1622929416.6788075-UTR-F-serratus_M_contig1430:66944..66949	Fucus serratus male	UTR	F-serratus_M_contig1430 66945..66949 -
1690962841.9676013-UTR-F-serratus_M_contig1430:66944..66949	1690962841.9676013-UTR-F-serratus_M_contig1430:66944..66949	Fucus serratus male	UTR	F-serratus_M_contig1430 66945..66949 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929416.6274095-CDS-F-serratus_M_contig1430:66140..66266	1622929416.6274095-CDS-F-serratus_M_contig1430:66140..66266	Fucus serratus male	CDS	F-serratus_M_contig1430 66141..66266 -
1690962841.942755-CDS-F-serratus_M_contig1430:66140..66266	1690962841.942755-CDS-F-serratus_M_contig1430:66140..66266	Fucus serratus male	CDS	F-serratus_M_contig1430 66141..66266 -
1622929416.6448536-CDS-F-serratus_M_contig1430:66443..66635	1622929416.6448536-CDS-F-serratus_M_contig1430:66443..66635	Fucus serratus male	CDS	F-serratus_M_contig1430 66444..66635 -
1690962841.9508257-CDS-F-serratus_M_contig1430:66443..66635	1690962841.9508257-CDS-F-serratus_M_contig1430:66443..66635	Fucus serratus male	CDS	F-serratus_M_contig1430 66444..66635 -
1622929416.662667-CDS-F-serratus_M_contig1430:66899..66944	1622929416.662667-CDS-F-serratus_M_contig1430:66899..66944	Fucus serratus male	CDS	F-serratus_M_contig1430 66900..66944 -
1690962841.9588923-CDS-F-serratus_M_contig1430:66899..66944	1690962841.9588923-CDS-F-serratus_M_contig1430:66899..66944	Fucus serratus male	CDS	F-serratus_M_contig1430 66900..66944 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1430:64985..66949-
coding sequence from alignment at F-serratus_M_contig1430:64985..66949-

protein sequence of mRNA_F-serratus_M_contig1430.3087.1

>prot_F-serratus_M_contig1430.3087.1 ID=prot_F-serratus_M_contig1430.3087.1|Name=mRNA_F-serratus_M_contig1430.3087.1|organism=Fucus serratus male|type=polypeptide|length=121bp
MVDVYVLEGFPLRGLVFHTLGKDLEEVSKVIEKCVTFLVEVDTPHTMLFS
TGRAFLLPRQHLEEPPFAVVPGFPEVSGEILVTREEDFPKLTADQIFKWW
RDHVSVDAEDFDRIVKSCIE*

mRNA from alignment at F-serratus_M_contig1430:64985..66949-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1430.3087.1 ID=mRNA_F-serratus_M_contig1430.3087.1|Name=mRNA_F-serratus_M_contig1430.3087.1|organism=Fucus serratus male|type=mRNA|length=1965bp|location=Sequence derived from alignment at F-serratus_M_contig1430:64985..66949- (Fucus serratus male)
GGGATATGGTGGATGTTTACGTTTTGGAAGGATTTCCCCTCCGGGGACTG
GTGAGGACGTTAGACACGCGTGACTGAAAGCGCTTTTCATGCTGGGATAA
TCAAGGGGTGGATAACAGGAAGACTGTATCCCAAAAGGGATCCCGAACGC
CAACGCACTGTTCACAGTGGCTAAAGTACTGTACACTCGACCGTCAAGAG
AGGGGTTGCCTGCGCCGCCCTCGAAAGAAAAAAACAGTCAATGGATTGAC
CCGACTTGCCTGCCAATTCACGCAAATCTGCTCCATATGGCTCTCTCTCT
ATGACCCGTCTCAGGTATTTCATACTCTTGGGAAGGATCTCGAGGAGGTT
AGCAAGGTTATCGAAAAGTGCGTGACCTTCCTCGTGGAGGTGGATACGCC
ACACACGATGCTCTTCAGCACCGGAAGGGCCTTCTTGCTGCCGAGACAAC
ACCTCGAGGAACCACCTTTCGCCGTGGTGCCTGGTTTCCCAGAGGTTTCC
GGGGAGGTAAGCACGATAATCCCCCCACCCCCCCACGCCCCCCCGCGCGC
TCTCCGGGTGTGCTCGACTGGGCTCACTAGACACAGACCTGAACTTTGTT
CGTTTCGACTGATGCCATGTGGGGGTTTATTACCTTAGTGAGCGTAACCC
GAATCGCGTTAATTTTTCTCTTGTCCACCTTAGATTCTCGTGACGAGGGA
AGAGGACTTCCCGAAGCTGACGGCGGACCAGATCTTCAAATGGTGGCGAG
ACCACGTCTCTGTCGATGCCGAGGACTTTGACAGGATAGTCAAATCCTGC
ATCGAGTAATCCTACGTCTTTCTCTGCGCGGCTCGTTGTCCATCGAAGGC
CATTCGCGCGGGGAGCATAAACTAGCTGAAGCGAAGCAGTGTTTTCGGTG
GAAGAGCCTCTTGGGATGTCGTTCCGTGGGCTCACGACGTGCGAGAACCC
GTTGCAACTCTGACTAACCTGCGGAGGGCCGCGACGAGGGGGGTAAAAAT
AATGCCATGACGTGGGAAATGATGACTCGAGAGACCGTTTCGACCGCCCG
GAGAACGACCACCCCGCGCTCGCTCGCGCGCCGAGAGTTTTCGTATGGTG
AAACGCTCGCGTAACTGGCGAACGTTTTTTCCACAAACTGCATAATATAT
ACCAGGTCTTACTATGAAGGACCTTCAGATTTTGTTGATCTGCCACATGA
TGGGCTCCATGGCCGCCTCAGAACGTGGTCGGTTTTCTCAGGTGTAACGA
TATCACAATATTAGGGAAGGTTTTCATACCTCAGAAAAATGGTTGCAGTG
CGTTTTAAAGTATCTTACCATAGTGGAACCGTGATGCCTCTACTGCAGTG
CGACCCCCTATATTTTGAAGATAATTTTGTGAAGAGACGTTGGCATTGAA
TCAATGCTTTGGGCACGCGGTGTGGGATGTTGGTAGTATTTAATTCCTTT
TTGGGTGTACGGTAGCGACTTACGGCGACTTTCTGGCATCAGGGGCTCTG
CCCCATGCAGCGCATTAGGCTGCTTAGGCTGTAACATTAAGACCGGTTTT
GGAGAATTTTTTTTTTTTTTTCACGGTGTTGGAAACTTGTGGGTCATGGA
AACCAACCAGCGTTTGAATGTGCAAGATGGAAGAGCCGAAAAAAAAAAGT
CTGTTGGGAAATAATGCATCGCTCATGTAGCCCCTGCTGATTTACCTCCA
GGATGCTGCTGGGAAAGAGCTTCGCCATGGTTTCAAAGAGAGCGTTACTA
TTGATGTCAACTCAGTATTCTGACGTGGACTTTGTCGTGTTACCTCGAGT
ACTTATTCGCCTGACCGATAGCAGGTGTATATGTCTTCAAGGATTTGATA
GTTTACTTTCTGTCGGTGTGCTGCTCCGAGCGCGCTGAAGGAAATCAGGG
CGGGCACAAGACTCGGGAGTAGCCGGCGTGTAACGCGGCTAGGGGATTGC
CGCTTCAGCCACGGC

Coding sequence (CDS) from alignment at F-serratus_M_contig1430:64985..66949-

>mRNA_F-serratus_M_contig1430.3087.1 ID=mRNA_F-serratus_M_contig1430.3087.1|Name=mRNA_F-serratus_M_contig1430.3087.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig1430:64985..66949- (Fucus serratus male)
ATGGTGGATGTTTACGTTTTGGAAGGATTTCCCCTCCGGGGACTGATGGT
GGATGTTTACGTTTTGGAAGGATTTCCCCTCCGGGGACTGGTATTTCATA
CTCTTGGGAAGGATCTCGAGGAGGTTAGCAAGGTTATCGAAAAGTGCGTG
ACCTTCCTCGTGGAGGTGGATACGCCACACACGATGCTCTTCAGCACCGG
AAGGGCCTTCTTGCTGCCGAGACAACACCTCGAGGAACCACCTTTCGCCG
TGGTGCCTGGTTTCCCAGAGGTTTCCGGGGAGGTATTTCATACTCTTGGG
AAGGATCTCGAGGAGGTTAGCAAGGTTATCGAAAAGTGCGTGACCTTCCT
CGTGGAGGTGGATACGCCACACACGATGCTCTTCAGCACCGGAAGGGCCT
TCTTGCTGCCGAGACAACACCTCGAGGAACCACCTTTCGCCGTGGTGCCT
GGTTTCCCAGAGGTTTCCGGGGAGATTCTCGTGACGAGGGAAGAGGACTT
CCCGAAGCTGACGGCGGACCAGATCTTCAAATGGTGGCGAGACCACGTCT
CTGTCGATGCCGAGGACTTTGACAGGATAGTCAAATCCTGCATCGAGTAA
ATTCTCGTGACGAGGGAAGAGGACTTCCCGAAGCTGACGGCGGACCAGAT
CTTCAAATGGTGGCGAGACCACGTCTCTGTCGATGCCGAGGACTTTGACA
GGATAGTCAAATCCTGCATCGAGTAA