mRNA_F-serratus_M_contig1425.3042.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1425.3042.1
Unique NamemRNA_F-serratus_M_contig1425.3042.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM)

HSP 1 Score: 237 bits (604), Expect = 3.400e-69
Identity = 142/395 (35.95%), Postives = 217/395 (54.94%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR--LQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPVSSGKAPPSKADGPQNDAKIAEMHGI----PYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPIDYNIRVHEDNEGAIKMAE 1167
            R VAKG+ Q  GI + ++ +P   + SI  +LA  A  D E   +DV+ AFL  DV EELY++ PDG+ D  N   +  L++A++G   A   W+ K  + L  +GF RS ADP V+ R+   +   I+V+YVDDL++ S+TK+        L+  F IK+LGE+ Y LG  I R+R+ KT+ ++Q+ Y + + E+FG+ K         KA  + AD      K+ E        PYRE VGALM++A+ TRPD+A     +AKF ++    HW A  + L+YLK T  +G+ + GA +   +  + DA+ A   DTR S +G    L G A SW S+ Q    T+++E+EY +L     E   +R +   M         +++DN+G I +A+
Sbjct:   48 RLVAKGYTQRPGIDFTDTFAPVAREESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNSKLNKHLEDQGFRRSDADPCVYVRRSTDE-YSIVVIYVDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKC--------KAVHTPADCNSKLVKMTEEEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDMGIVFNGAIKGEPIG-YADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYTSLYSATQEAVRLRLLLKDMGYEDQGATLIYQDNQGCIALAK 432          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 248 bits (632), Expect = 7.770e-69
Identity = 140/393 (35.62%), Postives = 231/393 (58.78%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPVSSGKAPP---SKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPID-YNIRVHEDNEGAIKMAE 1167
            R V KG  Q KG+ ++E+ SP    SSIR  LA+ A  D +  Q+D   AFL+ D+TEE+Y+  P+GY++S  +V RL+K+++G   A  +W+ K  R L   G  +S+ DP ++  K   K +V + V+VDDLL+ S+ K+   +    L   F + D+GE  + LG  I+RDR+ K + +DQ+ Y   V  RFG+   +  P ++   P    SK   P +  +  +M  IPY+EAVG+L++ + + RPD+A+    +++F   PGP HW AV + L+Y+K T+   + Y G T+  +++ + D+D AS  D R SV+G   ++  G+ SW ++ Q  T  +T+E+EY+AL+    E  ++R +   +VPP +   +R+  DN+GA+ +A+
Sbjct:  906 RLVVKGCAQRKGLDFEETFSPVVRYSSIRYLLALAAKRDMDIHQMDAVSAFLQGDLTEEIYMRQPEGYQES-GKVCRLRKSLYGLKQASRVWNIKLDRSLKTIGLRQSKFDPCIYY-KSSQKKMVFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCN--PAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWKLEYDG-TKSSEITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTALSTTEAEYMALSAATQEALWLRGLSEELVPPSERIPLRIFVDNQGALNLAQ 1293          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.540e-68
Identity = 140/389 (35.99%), Postives = 227/389 (58.35%), Query Frame = 1
Query:   25 QIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPV-SSGKAPPSKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYG-GATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPP-IDYNIRVHEDNEGAIKMAEKRFSS 1182
            Q + I + + S+PT   SS+RM  A+   LD E    D++ AF+ A + E++++ +P+G      ++ +L K+++G   A   W     + L+A GFE+  AD  VFR    G+ V+++ V+VDD+  +  TK+   Q  +DL    P+K LGE+ +Y GC+  RDR+A  +T+ QQ Y + + ER+G+     IP+ ++ K     AD P  +         P+R  VG+L+W+A +TRPD+A +   +A++   P   HWKA +  L Y  RT+  G+ +  G      L  +VDAD+AS    R SVSGG V+  GGA +WFS+AQ+  T +T+ +E+VA+A++  E+ F+RQ+  FM+P  +   I ++EDNEGAI++A+   S+
Sbjct:    2 QKEYIDFGDLSAPTVASSSVRMLAALACELDLEFCHSDIDQAFVRAPLKEDIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRFVEGGEVVLLLEVHVDDIFAVG-TKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH--------PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKYPISN 381          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: UPI001F00A048 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00A048)

HSP 1 Score: 246 bits (627), Expect = 2.380e-68
Identity = 144/392 (36.73%), Postives = 228/392 (58.16%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS-PNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPVS-SGKAPPSKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFI-RQIKAFMVPPIDYNIRVHEDNEGAIKMAE 1167
            R V KGF+Q KGI + E  SP    +SIR+ L ++A ++ E  Q+DV+ AFL   + EE+Y+E P+G+  S  N V +L+K+++G   A   W KKF   + ++G++++ AD  V+ +K      V +++YVDD+L++ +  +  +Q  ++L  SF +KDLG     LG  ITRDRK + + L Q++Y + V  RF +     + +  +     SK   P +  +I EM  +PY  AVG+LM+    TRPD+A+    +++F   PG EHW+AV   L+YLK T  L + YGGA  D  L  + DAD A   D+R S SG      GGA SW SR Q+    +T+E+EY+A AE   E+ ++ R ++ F +   +Y  +VH D++ A+ +++
Sbjct:  712 RLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGMVASMNLELEQMDVKTAFLHGGLDEEIYMEQPEGFEVSGDNLVCKLKKSLYGLKQAPRQWYKKFDSCMTSQGYKKTSADECVYIQKFSDGNFVALLLYVDDILIVGKDAKKINQLKKELSKSFDMKDLGPAQQILGMQITRDRKNRRLWLSQEKYIERVLARFNMNNAKPVSIPLANHFKLSKRSCPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDIAHAVGKVSRFLSNPGKEHWEAVKWILRYLKGTIKLCLCYGGA--DPILEGYTDADMAGDLDSRKSTSGFIFTFAGGAVSWQSRLQKCVALSTTEAEYIAAAEAGKEMLWLKRYLQEFGIKQKEY--KVHCDSQSALDLSK 1099          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.440e-68
Identity = 134/384 (34.90%), Postives = 223/384 (58.07%), Query Frame = 1
Query:   25 QIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIR--KTSVIPVSSGKAPPSKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYG-GATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPIDYN-IRVHEDNEGAIKMA 1164
            Q   I + E  +PT + SS+R+  A+    + +    D++ AF+++++ E++++ LP G       + +L K+++G   A   W     R L+  GF +  AD  VFR    G+ ++IIVV+VDD+  + + ++ +    EDL    P+K+LGE+ +Y  C   RD +   + + QQR+A+ +   +GI   ++  +PVS         D  +N+A       +P+RE VG+LMW+A+ TRPD+A     +A++   P   HWKA +  L Y++RT+ +G+T+  G    + +  +VDAD+AS    R SVSGG V+ GGG  +WFSR Q+  T +T+E+EYVA+A+++ E+ F+RQ+  FM+P      I V EDN+GAI++A
Sbjct:    2 QRASIDFGELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFG-EDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSV-----KLTDFDENEACA----DVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 375          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 5.480e-68
Identity = 140/397 (35.26%), Postives = 229/397 (57.68%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPV-SSGKAPPSKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYG-GATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPP-IDYNIRVHEDNEGAIKMAEKRFSS 1182
            R VA+G  Q + I + +  +PT   SS+RM  A+   LD E    D++ AF+ A + E +++ +P+G      ++ +L K+++G   A   W     + L+A GFE+  AD  +FR    G+ V+++VV+VDD+  +  TK+   Q  +DL    P+K LGE+ +Y GC+   DR+A  +T+ QQ Y + + ER+G+     IP+ ++ K     AD P  +         P+R  VG+L+W+A +TRPD+A +   +A++   P   HWKA +  L Y  RT+  G+++  G      L  +V AD+AS    R S SGG V+  GGA +WFS+ Q+  T +T+++EYVA+A++  E+ F+RQ+  FM+P  +   I ++EDNEGAI++A+   S+
Sbjct:  173 RLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVG-TKERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH--------PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISN 560          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 231 bits (588), Expect = 5.350e-67
Identity = 133/390 (34.10%), Postives = 223/390 (57.18%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPVSSGKAPPSKADGPQNDAKIAEMHGIP-YREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATE-DVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPIDYNIRVHEDNEGAIKMA 1164
            R VA+G+ QI G+ Y E+ +P     S+  AL + A+ D E  Q+DV+ A+L  ++ EE+Y+  P+GY D   +V RL+K ++G   +G  W+ +F R+L + GF + +AD  V++R   G+ + II V+VDDLL+ SET +D  +   +L + F +KDLGE    +G  I RDR+  T++L Q++Y + V  RFG++     PVS+    P+     + D  IA+   +  Y+  +G+L++ A  TRPD+++    L +F   PGPEHW A+ +  +YL  T  L + +    E ++  + + DA  AS PD R S+SG   ++GG + +W S+ Q     +++E+EY AL     +  + R + + +  P + +  + EDN+  I +A
Sbjct:   38 RLVAQGYSQIPGVDYNETFAPVVRLESVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGR-MTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNAR--PVST-LLDPNVILKKRTDDLIADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFRANEEGEIISTGYSDASFASNPDDRKSISGYTYLIGGASFAWSSKKQSTVALSSTEAEYTALTHATRQAIWNRNLLSELGCPQEDSTLIFEDNQSTIALA 423          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A4Y9ZBF0_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9ZBF0_9AGAM)

HSP 1 Score: 240 bits (613), Expect = 3.160e-66
Identity = 145/395 (36.71%), Postives = 222/395 (56.20%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS-PNQVGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADP--FVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVI--PVSSGKAPPSKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATEDVKL-SAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPIDYNIRVHEDNEGAIKMAE 1167
            R V +GF Q  G  Y E+ +PTP  S++R  LA+ A+ D E   +D+  AFL  D+ EE+YV  P+G+ +  P  V RL K+++G   AG  W KK    L A GF R + +   +V++R  +    +II V++DD+ + S+++    +  +DLR+ F  +DLG  S+ LG  ITRDR  +T++L Q++Y   + ERFG+ +   +  P++ G    S A  P+   + AEMH  PYR AVGAL ++A+ TR D+A++   LA+FG  PG EHWKA+   L+YLK T    +TY        L +A+ DADH    D   S SG  + +G  A SW SR Q I   +T+E+EYV+      E+ F+R +       ++    +  DN+ A+ + +
Sbjct:  735 RLVVQGFSQRPGFDYTETFAPTPRWSALRAVLALAAIEDLELESIDISSAFLNGDLEEEIYVRQPEGFTEKGPEWVWRLLKSLYGLKQAGRCWHKKLNEVLEALGFHRIKCEHSIWVYQRDDVR---IIIPVFIDDMTIASKSQAAIQKVKDDLRAHFKFRDLGPTSWLLGVEITRDRSTRTLSLSQRQYTLDLLERFGMSQCDTVATPLNPGTRLTS-AMSPKTQEESAEMHDKPYRAAVGALQYLATATRCDIAHSVGVLARFGHNPGIEHWKALKHLLRYLKGTLDYKLTYHPDPSGSHLFTAFCDADHGGDLDNGRSTSGFMIRMGTAAISWASRLQTIVALSTTEAEYVSAVAAGQEILFLRNLFTCFGYSLNSPTPLSIDNQSALSVTK 1125          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A4Y9ZKD1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZKD1_9AGAM)

HSP 1 Score: 230 bits (587), Expect = 7.800e-66
Identity = 143/404 (35.40%), Postives = 218/404 (53.96%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSVIPVSSGKAPP---SKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATEDVKLSAWVDADHASCPD---TRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPIDYNIRVHEDNEGAIKMAEKRFSSRR 1188
            R VAKGF Q+ G+ + E+ SP     S R+AL + A  DWE  QLDV+ AFL   + EE+Y+E P G+ +   +  + RL K ++G    G  W+  F   +   G++R   +  ++ R H      I+VV+VDD+ V++++K +  +   +LRS F I +LG +S+ +G  + RDR A+TVT+ Q     +V  +FG++     PVS+   P    + AD P +DA  AEM  IPYRE +G+LM++A  +RPD+A+    L++F   PG  HW       +YLK T   G+  GG  + + LS + DA     P     R S+SG    LG GA SW S+ Q +T  +T ESEY A A    E  ++  I   +  P    + +  DN+ AI++  ++ S  R
Sbjct:  123 RLVAKGFTQVPGVDFHETYSPVTRLKSQRLALHIGATHDWEMEQLDVKTAFLHGVLEEEVYMEQPPGFAEPGKEDFICRLLKGLYGLKQGGRAWNLLFDSIMQELGYKRLDCEWCIYYRTH-SSGRSIVVVHVDDMNVIADSKAEMARVKSELRSHFDIVELGPVSWLVGLAVARDRVARTVTITQTALVDSVITQFGLQDAH--PVSTPLDPNVHLTHADCPSDDASRAEMSIIPYRELIGSLMYLAIGSRPDIAHAVQHLSQFNANPGHNHWHGAKHVARYLKGTRTHGLVLGGL-QPLALSGFSDASFGGQPGPAGARRSISGFVFTLGSGAISWSSKRQPVTALSTCESEYAAAAHAAREALWLCNILTLLDFPPPGPVPIACDNQSAIRLTHEQSSHCR 522          
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 233 bits (595), Expect = 2.960e-65
Identity = 142/391 (36.32%), Postives = 219/391 (56.01%), Query Frame = 1
Query:    1 RFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQ--VGRLQKAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVVYVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKTVTLDQQRYAQTVTERFGIRKTSV--IPVSSGKAPPSKADGPQNDAKIAEMHGIPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYLKRTAILGVTYGGATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATSWFSRAQRITTTATSESEYVALAEIVNELRFIRQI--KAFMVPPIDYNIRVHEDNEGAI 1155
            R VAKGF Q +G+ Y+E+ SP  ++ S R+ +A++A  D E  Q+DV+ AFL  D+TE++Y+  PDG++ S  +  V +L+K+++G   A   W  KF   + + GF+ +  D  ++  K  G  ++ +V+YVDD+L+ S       +    L  +F +KDLGE S+ LG  I RDR    + L Q+ Y   V ERF +   +    PV  G    SK   PQND +  EM  IPY  AVG+LM+    TRPD+A+    L +F   PG +HW+A  K L+YL+RT    +TY   ++ +++  + DAD+A C D   S SG   +L GGA SW S  Q +T ++T ++EYVA  E   +  ++R    +  +V  I   + ++ DN  A+
Sbjct:  344 RLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKL-SKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR-RSDLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVACYEATLQAVWLRNFISRLEIVDSISKPLTIYNDNSAAV 731          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1425.3042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G9E3_PHYRM3.400e-6935.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9Z683_LYGHE7.770e-6935.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KG67_9PHAE1.540e-6835.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001F00A0482.380e-6836.73DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6H5JEF2_9PHAE2.440e-6834.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE5.480e-6835.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284R853_ARMOS5.350e-6734.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZBF0_9AGAM3.160e-6636.71Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]
A0A4Y9ZKD1_9AGAM7.800e-6635.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GV19_FAGSY2.960e-6536.32Integrase catalytic domain-containing protein n=6 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1425contigF-serratus_M_contig1425:130822..132164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue9.5e-54
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1343
Cds size1104
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1425.3042.1prot_F-serratus_M_contig1425.3042.1Fucus serratus malepolypeptideF-serratus_M_contig1425 130909..132012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.9420273-UTR-F-serratus_M_contig1425:130821..1309081622929408.9420273-UTR-F-serratus_M_contig1425:130821..130908Fucus serratus maleUTRF-serratus_M_contig1425 130822..130908 +
1690962838.3263726-UTR-F-serratus_M_contig1425:130821..1309081690962838.3263726-UTR-F-serratus_M_contig1425:130821..130908Fucus serratus maleUTRF-serratus_M_contig1425 130822..130908 +
1622929408.9646065-UTR-F-serratus_M_contig1425:132012..1321641622929408.9646065-UTR-F-serratus_M_contig1425:132012..132164Fucus serratus maleUTRF-serratus_M_contig1425 132013..132164 +
1690962838.3569043-UTR-F-serratus_M_contig1425:132012..1321641690962838.3569043-UTR-F-serratus_M_contig1425:132012..132164Fucus serratus maleUTRF-serratus_M_contig1425 132013..132164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.9537525-CDS-F-serratus_M_contig1425:130908..1320121622929408.9537525-CDS-F-serratus_M_contig1425:130908..132012Fucus serratus maleCDSF-serratus_M_contig1425 130909..132012 +
1690962838.3389585-CDS-F-serratus_M_contig1425:130908..1320121690962838.3389585-CDS-F-serratus_M_contig1425:130908..132012Fucus serratus maleCDSF-serratus_M_contig1425 130909..132012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1425.3042.1

>prot_F-serratus_M_contig1425.3042.1 ID=prot_F-serratus_M_contig1425.3042.1|Name=mRNA_F-serratus_M_contig1425.3042.1|organism=Fucus serratus male|type=polypeptide|length=368bp
MALAVMALLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQ
KAMFGPMHAGLLWSKKFGRELMAKGFERSQADPFVFRRKHLGKAVVIIVV
YVDDLLVLSETKQDEHQALEDLRSSFPIKDLGEISYYLGCHITRDRKAKT
VTLDQQRYAQTVTERFGIRKTSVIPVSSGKAPPSKADGPQNDAKIAEMHG
IPYREAVGALMWVASMTRPDLAYTAHTLAKFGDKPGPEHWKAVMKALQYL
KRTAILGVTYGGATEDVKLSAWVDADHASCPDTRCSVSGGAVILGGGATS
WFSRAQRITTTATSESEYVALAEIVNELRFIRQIKAFMVPPIDYNIRVHE
DNEGAIKMAEKRFSSRR*
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mRNA from alignment at F-serratus_M_contig1425:130822..132164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1425.3042.1 ID=mRNA_F-serratus_M_contig1425.3042.1|Name=mRNA_F-serratus_M_contig1425.3042.1|organism=Fucus serratus male|type=mRNA|length=1343bp|location=Sequence derived from alignment at F-serratus_M_contig1425:130822..132164+ (Fucus serratus male)
CGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAGA GTCATCGTCGCCGACACCTACACAGTCGAGCATCCGGATGGCGCTGGCGG TGATGGCCCTGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATGGCA TTTCTCGAGGCGGATGTTACGGAGGAGCTCTACGTTGAGCTCCCCGACGG GTATCGCGACTCACCGAACCAGGTTGGACGACTGCAGAAGGCCATGTTTG GCCCGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCAGAGAGTTG ATGGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCTTCGTGTTCCGACG AAAGCATCTCGGGAAGGCCGTCGTCATCATTGTGGTCTACGTTGACGATC TACTAGTGCTGAGCGAAACGAAGCAGGACGAGCATCAGGCGCTGGAAGAC CTTCGATCCAGCTTCCCCATCAAGGATCTAGGGGAGATCTCGTACTACCT GGGATGTCACATTACTCGGGACCGCAAGGCCAAGACGGTGACGTTAGATC AGCAGCGTTACGCGCAGACGGTAACCGAGCGATTCGGAATTCGGAAGACC AGCGTGATCCCTGTTTCTTCGGGGAAAGCGCCACCTTCGAAGGCAGACGG GCCGCAAAACGACGCTAAGATCGCAGAGATGCATGGCATCCCGTATCGTG AGGCAGTGGGGGCACTAATGTGGGTAGCCAGCATGACTCGGCCTGACCTA GCTTACACCGCGCACACGCTCGCCAAGTTTGGTGACAAGCCCGGGCCCGA GCACTGGAAGGCAGTAATGAAAGCGCTACAGTACCTGAAACGAACGGCGA TCCTAGGGGTAACATATGGAGGCGCGACGGAGGACGTGAAGCTATCGGCA TGGGTGGACGCCGATCACGCATCATGCCCTGATACGCGCTGTTCGGTATC GGGGGGCGCGGTGATACTCGGTGGAGGGGCAACCAGTTGGTTTTCGCGGG CGCAGAGAATAACCACGACAGCGACGTCCGAATCGGAGTACGTAGCACTG GCGGAGATTGTGAATGAGCTACGTTTCATTCGGCAGATAAAAGCATTTAT GGTACCTCCAATCGACTACAATATCCGTGTTCACGAGGACAACGAGGGCG CTATCAAGATGGCAGAGAAAAGGTTTAGCAGTCGACGATAAGACACATCG ACGTGAAGCATCATATGGTTCGGGATGCCGTCGATGGGGGAATAGTCCGT GTAGAGTATGTCAAGTCGAGAGAACAGCATGCGGACGTACTAACTAAGGC GATAGATGCTAAGTCGTTTGAAAAGCACGCGCGTTTCCTGCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1425:130822..132164+

>mRNA_F-serratus_M_contig1425.3042.1 ID=mRNA_F-serratus_M_contig1425.3042.1|Name=mRNA_F-serratus_M_contig1425.3042.1|organism=Fucus serratus male|type=CDS|length=2208bp|location=Sequence derived from alignment at F-serratus_M_contig1425:130822..132164+ (Fucus serratus male)
ATGGCGCTGGCGGTGATGGCCCTGTTGGACTGGGAGGGGCGGCAGCTTGA
CGTAGAAATGGCATTTCTCGAGGCGGATGTTACGGAGGAGCTCTACGTTG
AGCTCCCCGACGGGTATCGCGACTCACCGAACCAGGTTGGACGACTGCAG
AAGGCCATGTTTGGCCCGATGCACGCCGGACTACTGTGGTCGAAGAAGTT
CGGCAGAGAGTTGATGGCGAAGGGGTTCGAGAGGTCCCAAGCCGATCCCT
TCGTGTTCCGACGAAAGCATCTCGGGAAGGCCGTCGTCATCATTGTGGTC
TACGTTGACGATCTACTAGTGCTGAGCGAAACGAAGCAGGACGAGCATCA
GGCGCTGGAAGACCTTCGATCCAGCTTCCCCATCAAGGATCTAGGGGAGA
TCTCGTACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAAGACG
GTGACGTTAGATCAGCAGCGTTACGCGCAGACGGTAACCGAGCGATTCGG
AATTCGGAAGACCAGCGTGATCCCTGTTTCTTCGGGGAAAGCGCCACCTT
CGAAGGCAGACGGGCCGCAAAACGACGCTAAGATCGCAGAGATGCATGGC
ATCCCGTATCGTGAGGCAGTGGGGGCACTAATGTGGGTAGCCAGCATGAC
TCGGCCTGACCTAGCTTACACCGCGCACACGCTCGCCAAGTTTGGTGACA
AGCCCGGGCCCGAGCACTGGAAGGCAGTAATGAAAGCGCTACAGTACCTG
AAACGAACGGCGATCCTAGGGGTAACATATGGAGGCGCGACGGAGGACGT
GAAGCTATCGGCATGGGTGGACGCCGATCACGCATCATGCCCTGATACGC
GCTGTTCGGTATCGGGGGGCGCGGTGATACTCGGTGGAGGGGCAACCAGT
TGGTTTTCGCGGGCGCAGAGAATAACCACGACAGCGACGTCCGAATCGGA
GTACGTAGCACTGGCGGAGATTGTGAATGAGCTACGTTTCATTCGGCAGA
TAAAAGCATTTATGGTACCTCCAATCGACTACAATATCCGTGTTCACGAG
GACAACGAGGGCGCTATCAAGATGGCAGAGAAAAGGTTTAGCAGTCGACG
ATAAATGGCGCTGGCGGTGATGGCCCTGTTGGACTGGGAGGGGCGGCAGC
TTGACGTAGAAATGGCATTTCTCGAGGCGGATGTTACGGAGGAGCTCTAC
GTTGAGCTCCCCGACGGGTATCGCGACTCACCGAACCAGGTTGGACGACT
GCAGAAGGCCATGTTTGGCCCGATGCACGCCGGACTACTGTGGTCGAAGA
AGTTCGGCAGAGAGTTGATGGCGAAGGGGTTCGAGAGGTCCCAAGCCGAT
CCCTTCGTGTTCCGACGAAAGCATCTCGGGAAGGCCGTCGTCATCATTGT
GGTCTACGTTGACGATCTACTAGTGCTGAGCGAAACGAAGCAGGACGAGC
ATCAGGCGCTGGAAGACCTTCGATCCAGCTTCCCCATCAAGGATCTAGGG
GAGATCTCGTACTACCTGGGATGTCACATTACTCGGGACCGCAAGGCCAA
GACGGTGACGTTAGATCAGCAGCGTTACGCGCAGACGGTAACCGAGCGAT
TCGGAATTCGGAAGACCAGCGTGATCCCTGTTTCTTCGGGGAAAGCGCCA
CCTTCGAAGGCAGACGGGCCGCAAAACGACGCTAAGATCGCAGAGATGCA
TGGCATCCCGTATCGTGAGGCAGTGGGGGCACTAATGTGGGTAGCCAGCA
TGACTCGGCCTGACCTAGCTTACACCGCGCACACGCTCGCCAAGTTTGGT
GACAAGCCCGGGCCCGAGCACTGGAAGGCAGTAATGAAAGCGCTACAGTA
CCTGAAACGAACGGCGATCCTAGGGGTAACATATGGAGGCGCGACGGAGG
ACGTGAAGCTATCGGCATGGGTGGACGCCGATCACGCATCATGCCCTGAT
ACGCGCTGTTCGGTATCGGGGGGCGCGGTGATACTCGGTGGAGGGGCAAC
CAGTTGGTTTTCGCGGGCGCAGAGAATAACCACGACAGCGACGTCCGAAT
CGGAGTACGTAGCACTGGCGGAGATTGTGAATGAGCTACGTTTCATTCGG
CAGATAAAAGCATTTATGGTACCTCCAATCGACTACAATATCCGTGTTCA
CGAGGACAACGAGGGCGCTATCAAGATGGCAGAGAAAAGGTTTAGCAGTC
GACGATAA
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