mRNA_F-serratus_M_contig1410.2968.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI) HSP 1 Score: 358 bits (919), Expect = 2.340e-111 Identity = 201/448 (44.87%), Postives = 284/448 (63.39%), Query Frame = 1
Query: 604 PTRGAYHSMIPAMRRHEDLQGIYEAMHDMDKEGRAPNDPAFAVAFWAARRLGDPDFAKLLLEMRSKAEYPPRQDFFVQVMLTLRDADRHEELLAYWRQLVCVNGLGDLEIAPETFILALRSAARTRAWDEIEVILKMMQARDISSGEVYAALLAGQRSLST--PGEVEQIAKLFEELESRTGVAPRRPLQLRLAVLWARTKVYDKAMLLFERAILDRSKIPQETRDLLVRTLVHLERYAEAKETWVSTPDKDKAKLRGLVFQTLMRAAQKLGDADWAMELHECCLTVGKKTQSWFHPIPIKMLAEAGRLPEAVKIVKTLRDRQHPKLPLDTYNLLCRRCREEGNAELAVEIVQEMRRGT-SRYVPYPDLLDFVIEAFVRQGRAREMVDIFEQLCAQNRQPDPESYVLMADAAVKCKDMSRTQKYVAEAEKRGLAASPEALAYAEGSKP 1938
PT+ AY SMI +R ED QGI +++M +E P + FAV F AR+LGD +FAK+LLE RS+A PPRQDFFV VM+TL +A + E+ L YWR+LVCV G+ L I PETF LALR+A + +AWDE+E I+ MMQ E +L G+R + P VE++ K+ +++E+ +G QL+LAV+ + ++ +AM LFE A + + + L+ TLV L ++ A+ W +K + G FQ M+AA+ L DADWA+ELHE L +K WFHPI +++LAEAGRL EA +I +TLR HPKLP +Y++LCR C++ G L V++VQ MR+GT S Y+P PD+L FV+EAF+ +G E++ +FE++ AQ QP+PE YVL+ADAA D+ +T + AEK G AS ALA+ + + P
Sbjct: 3 PTKVAYQSMISGLRIGEDWQGILTTINEMLEEEVVPTEAGFAVGFMTARKLGDVEFAKMLLERRSQAGMPPRQDFFVNVMVTLGEAGKPEDFLEYWRRLVCVQGIDGLGIRPETFYLALRTAVKIKAWDEVEAIIGMMQEDGRPMDEKVHNVLMGRRQAVSKDPAHVERLLKVLQQMEAYSGRGLTPMCQLQLAVVCSDAGMHARAMPLFESAQREGVLFGKFHKPPLLSTLVALGKFKRARTEWRQATWANKKEFTGSTFQVFMKAAEGLKDADWALELHEQSLEGKQKHGRWFHPIALQVLAEAGRLEEAFRIAETLRTSGHPKLPPTSYHVLCRCCKQHGEKALVVKVVQTMRKGTMSLYLPPPDVLGFVVEAFIEKGIPGEVLTLFERMRAQRIQPNPEVYVLLADAAAAANDLPQTVHFAEMAEKGGRKASAGALAFTQNNAP 450
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Match: D7FK78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK78_ECTSI) HSP 1 Score: 278 bits (712), Expect = 7.250e-80 Identity = 168/464 (36.21%), Postives = 268/464 (57.76%), Query Frame = 1
Query: 196 LFWRLQELGRSNDSSRGDEALRLLQEGRREGIKDLRLYNATLRALSG---LVESST--IETTMAQLREDG-LQPDVHIYNFVIYGFAFNKDEGRAVQAYEKMLEEGVAPDNRTLSNLIIAYSWGDLNEMRRVLKEMRENNWWPTRGAYHSMIPAMRRHEDLQGIYEAMHDMDKEGRAPNDPAFAVAFWAARRLGDPDFAKLLLEMRSKAEYPPRQDFFVQVMLTLRDADRHEELLAYWRQLVCVNGLGDLEIAPETFILALRSAARTRAWDEIEVILKMMQARDISSGEVYAALLAGQRSLSTPGEVEQIAKLFEELESRTGVAPRRPLQLRLAVLWARTKVYDKAMLLFERAILDRSKIPQETRDLLVRTLVHLERYAEAKETWV-STPDKDKAKLRGLVFQTLMRAAQKLGDADWAMELHECCLT---VGKKTQSWFHPIPIKMLAEAGRLPEAVKIVKTLR 1557
L RL+ + SN + A+ LL++GR+ GIKD+++YN L+ ++ + E +E Q+ ED L+P+ Y+ +IYG++ + EG AV+ E+M +G+ P+ +TLS++I+A+SWG + +MRRV EMRE W PT+ A +MI A+RR ED +GI + M + G+ + VA AA G+ FA+ LL K ++ P++ +V VM+ LR+A +HEE LA WR+LV ++GLGD+++ +T+ LAL SA + WDE+E IL MMQA+ + S + S G+ ++ ++F E+ R P R + L A+ +AR + + KAM F+ A+ + +K+ +LLV +L +ERY E KE W +T KD + R V T+ AA++L DADWA+ELH + G + + + +L +AGRL EA +++ R
Sbjct: 28 LTTRLRRMFASNGNGPWWLAVHLLEKGRQNGIKDVKVYNTVLKMIATDERMTEDKMKEMERLFEQMTEDDELEPEALTYSHLIYGYSQGRKEGEAVRLLEEMTVKGLQPERKTLSSMIVAHSWGSVEDMRRVSSEMREKGWTPTQRANSAMIGALRRAEDWEGILDTTRAMLENGQTMTEAGLVVAIKAAANAGNAGFARELLLTHGKNKHRPQEQLYVCVMVALRNACQHEECLACWRELVLLDGLGDVKLNGKTYNLALTSAVKMERWDEMEAILDMMQAKAVESTVATWRSMVDVWSAEETGDEGRLDRIFGEIHRRQW-RPDRAVGLHAAMAYARCRAWVKAMAWFDPALAEDNKLGPNETELLVMSLAGVERYGEVKEVWTRNTGSKDASVFRPAVLLTMAEAARELDDADWALELHSVASSRRGAGVAAPRLWQDV-VGVLTKAGRLEEAADVLQQTR 489
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI) HSP 1 Score: 261 bits (667), Expect = 5.060e-72 Identity = 176/542 (32.47%), Postives = 279/542 (51.48%), Query Frame = 1
Query: 196 LFWRLQELGRSNDSSRGDEALRLLQEGRREGIKDLRLYNATLRALSGLVESS-----TIETTMAQLREDGLQPDVHIYNFVIYGFAFNKDEGRAVQAYEKMLEEGVAPDNRTLSNLIIAYSWGDLNEMRRVLKEMRENNWWPTRGAYHSMIPAMRRHEDLQGIYEAMHDMDKEGRAPNDPAFAVAFWAARRLGDPDFAKLLLEMRSKAEYPPRQDFFVQVMLTLRDADRHEELLAYWRQLVCVNGLGDLEIAPETFILALRSAARTRAWDEIEVILKMMQA-RDISSGEVYAALLAGQRSLSTPGEVEQIAKLFEELESRTGVAPRRPLQLRLAVLWARTKVYDKAMLLFERAILDRSKIPQETRDLLVRTLVHLERYAEAKETW---VSTPDKDKAKLRGLVFQTLMRAAQKLGDADWAMELHECCLTVGKKTQSWFHPIPIKMLAEAGRLPEAVKIVK-----TLRDRQHPKLPLDTYNLLCRRCREEGNAELAVEIVQEMRRGTSRY---VPYPDLLDFVIEAFVRQGRAREMVDIFEQ 1770
L R++ L +N + +++L EGRR+GIK+L +Y A L+ L S +E + ++ EDGLQPDV YN ++ A + AV +E+ML GV P+ RT S++I+A+S G + M R ++EM W +R A MI M D G+ + M +E + P + AF A+ AA LG + AK L R++A PP + +V++ML L A + EE L YWRQLVCV+GL + I PET+ LA++ DE+E +L MM+A R + + E YAA L G TP + + FE + +R+G P + R A WA ++ +A LF + + K+ L+ + +L R+AE K++W V + +KA L + ++AA+ LGD DWA+E+ + GK++ + +++L EAGR EA ++K LR ++ Y L C + G+ EL ++ MR + Y P ++ F+++A GRA E+ F++
Sbjct: 118 LVRRIKRLAGANKRIKMGLVIQILDEGRRQGIKELVVYKAVLKQLLSTYGESKDAAQNLERVLERMEEDGLQPDVTTYNHILDFHALLHNSEAAVAVHEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDETYAAALGGLEKWFTPHRAQGAQRAFEAI-ARSGPPPSMRVLQRKAKGWAHAGLWQEAEQLFSLVLAENGKLSNSEWKCLMMSQFYLGRFAEVKKSWSRNVEALEANKAGHSHLKLEYSLKAAKALGDVDWALEVRDAASEAGKRSVH-LDRVLVEILLEAGRPQEARDVLKEWEAVALRA-SSARVFQGVYELALESCEKSGDVELGLQFFDGMRSASPPYRLRSSCPSVV-FILKALKDAGRAHEVAPFFDE 655
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Match: A0A6H5KCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB7_9PHAE) HSP 1 Score: 243 bits (621), Expect = 2.620e-66 Identity = 136/363 (37.47%), Postives = 218/363 (60.06%), Query Frame = 1
Query: 253 ALRLLQEGRREGIKDLRLYNATLRALSGLVESSTIETT--MAQLRED-GLQPDVHIYNFVIYGFAFNKDEGRAVQAYEKMLEEGVAPDNRTLSNLIIAYSWGDLNEMRRVLKEMRENNWWPTRGAYHSMIPAMRRHEDLQGIYEAMHDMDKEGRAPNDPAFAVAFWAARRLGDPDFAKLLLEMRSKAEYPPRQDFFVQVMLTLRDADRHEELLAYWRQLVCVNGLGDLEIAPETFILALRSAARTRAWDEIEVILKMMQARDISSGEVYAALLAGQRSLSTPGEVEQIAKLFEELESRTGVAPRRPLQLRLAVLWARTKVYDKAMLLFERAILDRSKIPQETRDLLVRTLVHLERYAEAKETW 1332
A+ LL++GR+ GIKD+++YN + + E E Q+ ED GL+P+ Y+ +I+G++ + EG AV+ E+M +G+ P+ +TLS++I+A+SWG + +MRRV KEM+E W PTR A +MI A+ R ED +GI + M + G+ + VA AA +G+ FA+ LL + K ++ P++ +V VM+ LR+A +HEE LA WR+LV ++GLGD+++ T+ LAL SA +T WDE+E IL MMQ + + + + G+ ++ ++F E+ R P R ++L +A+ +AR + + KAM F+ A+ + SK+ +LLV +L LERY E KE W
Sbjct: 129 AVHLLEKGRQNGIKDVKVYNIMIATDEHMTEDKLKEMKRLFEQMTEDDGLEPEALTYSHLIHGYSQVRKEGEAVRLLEEMAVKGLQPERKTLSSMIVAHSWGSIEDMRRVSKEMQEKGWTPTRRANSAMIGALWRAEDWEGILDTTRAMLEAGQTMTEAGLVVAIKAATNVGNAGFARELLLIHGKNKHRPQEQLYVLVMVALRNASQHEECLACWRELVLLDGLGDVKLDGRTYNLALMSAVKTERWDEMETILDMMQVQAVEPTVATWRSIVDVWNAEETGDEGRLDQIFGEMVRREW-RPDRAVRLHVAMAYARCRAWVKAMAWFDPALTEDSKLGPSETELLVMSLAGLERYGEVKEVW 490
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Match: D7FK79_ECTSI (Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK79_ECTSI) HSP 1 Score: 233 bits (595), Expect = 1.180e-63 Identity = 151/475 (31.79%), Postives = 252/475 (53.05%), Query Frame = 1
Query: 481 MLEEGVAPDNRTLSNLIIAYSWGDLNEMRRVLKEMRENNWWPTRGAYHSMIPAMRRHEDLQGIYEAMHDMDKEGRAPNDPAFAVAFWAARRLGDPDFAKLLLEMRSKAEYPPRQDFFVQVMLTLRDADRHEELLAYWRQLVCVNGLGDLEIAPETFILALRSAARTRAWDEIEVILKMMQA-RDISSGEVYAALLAGQRSLS---TPGEVEQIAKLFEELESRTGVAPRRPLQLRLAVLWARTKVYDKAMLLFERAILDRSKIPQETRDLLVRTLVHLERYAEAKETWVSTPDKDKAKLRGLVFQTLMRAAQKLGDADWAMELHECCLTVGKKTQSWFHPIP----IKMLAEAGRLPEAVKIVKTLRDRQHPKLPLDTYNLLCRRCREEGNAELAVEIVQEMRRGTSRYVPYPDLLDFVIEAFVRQGRAREMVDIFEQLCAQNRQPDPESYVLMADAAVKCKDMSRTQKYVAEAE 1881
M+ +G+ PD TLS+L +A +WG N+M R L EM E W PTR A+ S I M + +D +G+ + + M ++ P + AFA+A +A RLG D AK+L E RS++ P+Q+ + +ML AD HEE LAYWRQLVC++G+G + I ET ALRSA + WDE++ I+ M++ R+ + Y +A RS S P +++ + E L + G+AP + R+AV++A+ K + KA +FE+ + ++ + ++++ LERY + ++TW + KD + + M A +L DA+WA E+ + + + P +K+LAE GR EA +I++ R + ++ +N L C++ G ++ +E + +R + P FV+ A GRA E + E+ A + +P+ Y +A AA + D + K++ AE
Sbjct: 1 MVSKGLEPDVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAIAFMWQRKDTEGVLQMIERMLEKSYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSESGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDLETCRSALRSAIVSDHWDEVDTIVGMLRGKREATPDHTYKLAIAACRSRSGIDRPDYWQRVERTVEALR-KAGMAPSSEVVCRVAVVYAQGKQWKKAAAMFEQTLAQGVEMWAFRWECMMQSFFFLERYDDVRKTWRRSKTKDGGQHTVRANELAMTTAHRLLDAEWAKEI--MAVPENRNPKKGLKPATLLTAVKILAETGRPREARQILQEWRPTKTTRINHKNFNELLLCCQQHGGTDVGLEFYRILRGHDALSRLQPATFAFVVGALCEHGRAGEAAGVLEEQIAVDYRPEKACYRAVASAASQSGDSEASAKFLEAAE 472
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Match: D7FK82_ECTSI (Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK82_ECTSI) HSP 1 Score: 105 bits (261), Expect = 2.430e-21 Identity = 50/116 (43.10%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 223 RSNDSSRGDEALRLLQEGRREGIKDLRLYNATLRALSGLVESSTIETTMAQLREDGLQPDVHIYNFVIYGFAFNKDEGRAVQAYEKMLEEGVAPDNRTLSNLIIAYSWGDLNEMRR 570
R+N +S E L+LLQ R G KD RLY A + LS ++ I + Q+++DG++PDV YN +IYG+A +KD A + YE++L G+ + TLSN+++A SW D++EMRR
Sbjct: 129 RNNGASAAKEGLQLLQAARSRGTKDARLYKAVFKLLSVNTNAAAISSLSEQMKQDGIKPDVETYNLIIYGYASSKDVAGARRTYEELLSSGLEANETTLSNMVVANSWKDIDEMRR 244 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1410.2968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1410.2968.1 >prot_F-serratus_M_contig1410.2968.1 ID=prot_F-serratus_M_contig1410.2968.1|Name=mRNA_F-serratus_M_contig1410.2968.1|organism=Fucus serratus male|type=polypeptide|length=534bp MAQLREDGLQPDVHIYNFVIYGFAFNKDEGRAVQAYEKMLEEGVAPDNRTback to top mRNA from alignment at F-serratus_M_contig1410:75002..88940- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1410.2968.1 ID=mRNA_F-serratus_M_contig1410.2968.1|Name=mRNA_F-serratus_M_contig1410.2968.1|organism=Fucus serratus male|type=mRNA|length=13939bp|location=Sequence derived from alignment at F-serratus_M_contig1410:75002..88940- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1410:75002..88940- >mRNA_F-serratus_M_contig1410.2968.1 ID=mRNA_F-serratus_M_contig1410.2968.1|Name=mRNA_F-serratus_M_contig1410.2968.1|organism=Fucus serratus male|type=CDS|length=3204bp|location=Sequence derived from alignment at F-serratus_M_contig1410:75002..88940- (Fucus serratus male)back to top |