mRNA_F-serratus_M_contig1391.2829.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: A0A834HDF7_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834HDF7_RHOSS) HSP 1 Score: 160 bits (405), Expect = 6.070e-43 Identity = 104/256 (40.62%), Postives = 146/256 (57.03%), Query Frame = 1
Query: 10 LTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGI--DVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWVT 771
LT +QR ++ E LL+ S +G L +G I E A+ FS + V IWKR +GV +++ G GRK I DV K++ EVPL+ RT+ R++AK + +PQ TL R +K+ +R + +KP LTE G+ RL + + + + VF M N V +DEKWFF+ ++ +RYYL E P + K I KVMFLAAVARPR + N F GKIGIFPFT + A+R+S++ AGT T
Sbjct: 18 LTNQQRQQIFEALLKQSERGKLKRGCIPEVAKLFSVNAKSVRRIWKRAVFCMENGVA-VDVSRRLHGRVGRKRIHFDVNKVS----EVPLRRRTSIRSLAKAVTVPQTTLFRRIKEGDIRPHTIAVKPHLTEEGKKARLRFCFSMLEPSSL------ANDPVFKNMYNYVHIDEKWFFLSREVERYYLLPREREPLRTCKSKRFITKVMFLAAVARPRFDAFRNEEFSGKIGIFPFTFKEPAKRSSKNCVAGTLET 262
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: A0A1R3HQ96_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3HQ96_9ROSI) HSP 1 Score: 157 bits (397), Expect = 7.760e-43 Identity = 99/255 (38.82%), Postives = 145/255 (56.86%), Query Frame = 1
Query: 7 NLTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWVT 771
NLT +QR + E LL+ S GVL +G++ A FS S + IWK+ + +G+ +N+ + G+ GRK I ++ + E+PL+ RT R++AK L + + T+ R +K+ +RA S +KP LT+ + RL + L + + G FD M N V +DEKWFF+ ++ +RYYL E+ P + K I KVMFLAAVARPR + N F GKIGIFPF + A+R S++R AGT T
Sbjct: 17 NLTNQQRQTIYEMLLKQSKDGVLSKGSLTSLATMFSVSPKTIGRIWKQAKLCMENGLI-VNVSSKLTGNVGRKKILIDPRKVS--EIPLRRRTNIRSIAKALNMSKSTVHRRVKEGFIRAHSNAVKPDLTDENKKTRLEFCLSKLDLTNAGINTIP-----FDGMFNQVHIDEKWFFMTRESERYYLLPEEDEPVRTCKSKRFITKVMFLAAVARPRFDESGNVKFSGKIGIFPFVHKEPAKRKSKNRIAGTMET 263
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: W2YNB0_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2YNB0_PHYPR) HSP 1 Score: 157 bits (396), Expect = 8.760e-43 Identity = 102/259 (39.38%), Postives = 147/259 (56.76%), Query Frame = 1
Query: 1 RNNLTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDVEKLTAALVE----VPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRV-FDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGT 762
R NLT +R +I +LL ST+ QGAI ++C Q+S +W+R K G I+ +GR G SGRK + L E +PL++R R +A LGI + TL + R+ S +KP LT+ RA R+ +A +V G G+R+ F++M + V +DEKWFF+KK QR+YLG+ EE+P V++K++I KVMFL AV RPR + R +DGKIG++PF A+R S++R AGT
Sbjct: 12 RKNLTPAERAEVIAYLLSVSTELSPPQGAIKACTTKYACGDAQISRLWRRSVKAIQAGAP-IDYESGRKGRSGRKSRLTSEFRVQLNEAIELIPLEDRADIRTLASSLGIAKSTLHDYYQAGAFRSHSAHVKPLLTDKQRAARVEFAAGFVH--------RGFGERLTFNSMMDFVHLDEKWFFLKKDKQRFYLGENEEVPHITVKNKNYIIKVMFLCAVTRPRWDATRLRIWDGKIGLWPFAVYEPAERASKNRPAGT 261
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3) HSP 1 Score: 159 bits (403), Expect = 1.060e-42 Identity = 98/255 (38.43%), Postives = 144/255 (56.47%), Query Frame = 1
Query: 7 NLTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWVT 771
N T +QRH + E LL+ S G L +GAI++ A FS S VS IW + + Q + G+ + L + GRK + V+ ++++PL+ R+ R++A L + + T+ R +K+ +R + +KP LT + RL + L + + S F M NV+ +DEKWF++ K +RYYL GE+ P Q K I KVMFLAAVARPR + N F GKIGI+PFTR A+R+S++R AGT T
Sbjct: 12 NTTVEQRHAIYEALLQASFSGELQRGAISDVASQFSVSNRTVSRIWHQAKFQINHGLPVV-LSSNMAKVVGRKRVQVD--FNQVLDIPLRRRSNIRSLANLLNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRS------LSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLET 257
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: A0A6A4ZNR1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZNR1_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.230e-42 Identity = 98/255 (38.43%), Postives = 150/255 (58.82%), Query Frame = 1
Query: 10 LTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGI-DVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLG-MRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWV 768
LT QRHR+ E LLE +G L +GA+ A+ F C +S IW R + +G + + G+SGRK +++ AA+ +VP ++R T RA+A + GIP+ T+ R++++ ++A S ++KPFLT RL +AL ++ + +G F+ M + V +DEKWF++ K ++YY+ + EEL + K I KVMFLAAVARPR + + FDGKIG++PF V A+RNS++R GT V
Sbjct: 20 LTLAQRHRIYELLLEICVQGELPRGAMLYVAQQFQCDSRTISRIWSRGRASSRNGRGVADFPSKIPGNSGRKRTRSADEIEAAIRQVPQESRQTMRALAFKSGIPRRTIGRHMQETRRLKARSSYIKPFLTPDNIQARLRYALSFLLPS-------SNGSYFFENMYDYVHIDEKWFYLTKVKRKYYVYEDEELAARFCKSKHFITKVMFLAAVARPRYDFHRKQMFDGKIGVWPFVESVPAKRNSKNRPKGTIV 267
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: F0WV30_9STRA (Transposase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WV30_9STRA) HSP 1 Score: 157 bits (397), Expect = 3.460e-42 Identity = 97/258 (37.60%), Postives = 142/258 (55.04%), Query Frame = 1
Query: 4 NNLTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGID---VEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWV 768
N LT +++ L+ LLEGS L GA+ EA+E ++ + + V +WKRY QR+D T G + GRKG+ ++ L + ++ L++R R+++ L IP TLQR +K +R + LKP L+E A R+ + ++ G F M + V +DEKWFF+KK +R YL E P +HKSHI K+MFL AVARPR N+ FDG++G++PF A+R SR+R AGT V
Sbjct: 45 NRLTVEEKSALVMELLEGSKNSRLQHGALKEASEKWNVNVHTVYRVWKRYCSQRADSATRGITFEGNACNIGRKGVSEEYIKDLHERISKLKLEHRDDLRSLSAALAIPSTTLQRYVKSKVLRVHTVTLKPTLSEDQNAERVRFISSFITLIPRGA--------TFSPMYDRVHLDEKWFFMKKTKRRVYLTPTEPTPYLHTRHKSHIPKIMFLCAVARPRINSCTGEVFDGRLGMWPFANYAPAERASRNREAGTLV 294
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: A0A6A4Z4U1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z4U1_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.560e-41 Identity = 97/259 (37.45%), Postives = 149/259 (57.53%), Query Frame = 1
Query: 1 RNNLTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDV-EKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLG-MRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWVT 771
R NLT +QR + E LLE ST G L GA+++ A F C +S +W R + +G ++ + G+ GRK E++ A+ VP R T R+VA Q IP+ T+ R++++ ++A S ++KP LTE RL +A+ +VR + +GT +F +M V VDEKWF++ K +++Y+ E++ V+ K I KVMFLAAVARPR ++ + FDGK+G++PF A+R S++R GT VT
Sbjct: 25 RENLTAQQRRAIYETLLEQSTDGGLPYGALHDLAVKFRCHWRTISRVWTRGRASLRNGNDVADVASRLQGNVGRKKTRTSEEIEQAIKTVPHFARQTLRSVAHQSNIPKSTIIRHIRETKRLKARSSYVKPLLTEDNLKTRLKFAMNFVRPSASGT-------HIFASMHQYVHVDEKWFYLTKVKRKFYVYDDEDIALRSVKSKQFITKVMFLAAVARPRYDSSKKKFFDGKVGVWPFVEVAPAKRTSKNRPKGTAVT 276
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: Q75LI7_ORYSJ (Transposon protein, putative, Mariner sub-class n=5 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q75LI7_ORYSJ) HSP 1 Score: 159 bits (401), Expect = 1.660e-41 Identity = 103/255 (40.39%), Postives = 147/255 (57.65%), Query Frame = 1
Query: 7 NLTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWVT 771
NLT QR + + L++ + G L + A E AE F+ R +V IW+R ++ R+ G+ +N+ + + +SGRK +++ A VPL+ R T R+ A GIP+ TL R LK+ +R S LKP L E + RL W + + D HT + F M N+V +DEKWF K+ + +YL E+ P VQ+K+ I KVMFLAAVARPR N FDGKIG++PFT++ AQR S++R GT VT
Sbjct: 140 NLTNIQRQEIYDALVKKTINGRLRKKATTEVAEMFNIKRGRVQDIWRRAKQCRAQGIP-VNVSSRKKTNSGRKKNEIDLSDVA--NVPLQLRGTLRSFASAAGIPKSTLHRMLKEGLIRRHSNTLKPLLKEENKRSRLQWCISML-DWHT-----LPNEPKFVDMRNIVHIDEKWFNTTKKTRTFYLVHWEDDPYRPVQNKNSIDKVMFLAAVARPRYNEEGICTFDGKIGLWPFTKKEPAQRTSQNRPRGTLVT 385
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: A0A6P6VMR6_COFAR (uncharacterized protein LOC113724538 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6VMR6_COFAR) HSP 1 Score: 151 bits (382), Expect = 2.390e-41 Identity = 94/250 (37.60%), Postives = 139/250 (55.60%), Query Frame = 1
Query: 10 LTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAG 759
LT ++R + E LL+ S G L +G I A F S V IWK +DG D++ R + GRK +D++ ++ +PL+ RT R+++ ++ + + TL R +K+ +R S LKP LT+ + RL + L + + T F +M NVV +DEKWF++ K+ ++YYL EE P + K I KVMFLAAVARPR + N FDGKIGIFPF + A+R+S++R AG
Sbjct: 16 LTNQERQMIFEALLQESNGGKLKRGTIRNIASLFKTSVRTVQRIWKLAAITSTDGRVDVSRRFSK--RCGRKRVDID--FTLIMAIPLRRRTNIRSLSSEMKVSKSTLHRRIKEGAIRPHSNALKPQLTDQNKQVRLNFCLSMLEPESLNSNPT------FMSMFNVVHIDEKWFYMTKECKKYYLHPQEEEPLRTCKSKKFIVKVMFLAAVARPRFDCSGNPTFDGKIGIFPFVFKEPAKRSSKNRMAG 255
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Match: UPI00077543C2 (uncharacterized protein LOC107280908 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI00077543C2) HSP 1 Score: 157 bits (398), Expect = 2.680e-41 Identity = 98/254 (38.58%), Postives = 147/254 (57.87%), Query Frame = 1
Query: 10 LTEKQRHRLIEHLLEGSTKGVLGQGAINEAAETFSCSRYQVSGIWKRYQKQRSDGVTDINLRNGRGGHSGRKGIDVEKLTAALVEVPLKNRTTQRAVAKQLGIPQ*TLQRNLKKLGMRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNVVMVDEKWFFIKKQGQRYYLGQGEELPTHRVQHKSHIKKVMFLAAVARPRRNTVANRNFDGKIGIFPFTRQVQAQRNSRHRAAGTWVT 771
LT QR + + LL+ S G L + A+ F S V IWKR + G+T +N+ + + G+SGRK ++++ + + +P+ R+T R++A+ LG+ + TL R K+ +R S LKP+L E+ + RL W + + D HT F M+N++ +DEKWF K+ + +YL GEE P V +K+ I KVMFL+AVA+PR + N F+GKIGI+PFTR+ AQR SR+R GT VT
Sbjct: 106 LTNIQRRGIYQLLLQKSKDGKLEKHTTRLVAQEFHVSIRTVQRIWKRAKICHEQGIT-VNVDSRKHGNSGRKKVEID--LSVIAAIPVHQRSTIRSLAQALGVSKSTLHRWFKEGLIRRHSNSLKPYLKEANKKERLRWCVSML-DPHT-----LPNNPKFIEMENIIHIDEKWFNASKKEKTFYLYPGEEEPYFTVHNKNAIDKVMFLSAVAKPRYDDEGNCTFNGKIGIWPFTRKEPAQRRSRNRERGTLVT 350 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1391.2829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1391.2829.1 >prot_F-serratus_M_contig1391.2829.1 ID=prot_F-serratus_M_contig1391.2829.1|Name=mRNA_F-serratus_M_contig1391.2829.1|organism=Fucus serratus male|type=polypeptide|length=138bp MRAASRFLKPFLTESGRARRLAWALRWVRDAHTGTGGTGSGQRVFDTMDNback to top mRNA from alignment at F-serratus_M_contig1391:19732..20502- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1391.2829.1 ID=mRNA_F-serratus_M_contig1391.2829.1|Name=mRNA_F-serratus_M_contig1391.2829.1|organism=Fucus serratus male|type=mRNA|length=771bp|location=Sequence derived from alignment at F-serratus_M_contig1391:19732..20502- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1391:19732..20502- >mRNA_F-serratus_M_contig1391.2829.1 ID=mRNA_F-serratus_M_contig1391.2829.1|Name=mRNA_F-serratus_M_contig1391.2829.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig1391:19732..20502- (Fucus serratus male)back to top |