mRNA_F-serratus_M_contig1383.2774.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.910e-50 Identity = 104/223 (46.64%), Postives = 132/223 (59.19%), Query Frame = 1
Query: 106 NTAQMCSNGLDGVE-NSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGS-------DSICISNGLSGIENDGV-CCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGE-------PS-TCSNGVFGVEAGGA-CCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCII 720
++A+ CSNGL+G++ N VCC CG CGG+GC + G A GL CC G ++ ++ YCD++ APCIIGS + SNGL GI+ +GV CC C QCGG+GC + + GL S CC G I +S CD + APC IG PS TCSNGV G++ G CC CG CGG GC AAGL AD CC G I S+ +CD ++ APCII
Sbjct: 188 SSARTCSNGLEGIDANGVVCCPLACGQCGGTGCNTSGAAFGLDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTCSNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTPSETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 167 bits (422), Expect = 5.900e-42 Identity = 89/208 (42.79%), Postives = 119/208 (57.21%), Query Frame = 1
Query: 118 MCSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGEPSTCSNGVFGVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIIDGPCGPA 741
+CSNG+ G++ + CC+AECGTCGG GC G GL D+CC I D C + APC++ D +C SNG+ GI+ CC+AEC CGG+GC GL + +CC I C V+ APC + + CSNG+ G++ G ACC+ +CG CGG GC GL AD+CC+ I + C + TAPCI+D GPA
Sbjct: 2755 VCSNGIPGIQTGNACCLAECGTCGGRGCAEYGG--GLGEDNCCQSEIEDFGELCSVTMEAPCVV--DDVC-SNGIPGIQTGNACCLAECGGCGGTGCAQLGG--GLGADNCCMSEIEDFGELCSVTMEAPCVVDD--VCSNGIPGIQTGNACCLAECGGCGGTGC--AQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPA 2951
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.570e-33 Identity = 85/241 (35.27%), Postives = 119/241 (49.38%), Query Frame = 1
Query: 121 CSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIG---------------------------------------EPSTCSNGVFGVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIIDG 726
CSNG+ G+++ + CC+AECG CGGS C + G GL AD+CC I + C + APC + D +C S+G+ GI + CC+AEC CGGSGC + GL + +CC G I C ++ APC + P CSNG+ G+++G ACC+ +CG CGG+ C GL AD+CC+ I+ C ++ APC IDG
Sbjct: 747 CSNGMPGIQSGNACCLAECGACGGSDCDAFGG--GLGADNCCESDIVEHGELCSIALEAPCYL--DDVC-SDGIPGIRSGNACCLAECGACGGSGC--DEFGGGLGADNCCEGNIEEHGELCSITLEAPCVVDGRLVADTVPCPSCLMVCLSEHGLTLPPSLFRISSRYSSLPPDMCSNGIPGIQSGSACCLAECGACGGLDC--DEFGGGLGADNCCVSDIVEHGELCSIALEAPCYIDG 978
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 135 bits (340), Expect = 2.770e-31 Identity = 98/243 (40.33%), Postives = 117/243 (48.15%), Query Frame = 1
Query: 88 LLMVVSNTAQMCSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICI----------SNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNI-GEPSTCS------------NGVF---GVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIIDGPCGP 738
LL S+ S G DG+ DVCC AECGTCGGSGCGSR GLTA++CC I ANV C G+APC++ D+ S G+ CC A C +CGGSGC GL+ +DCC I + C V+G APC + G+ S +G F GV G CC C CGG GC R GLT DCC I N C V+ APCI+DG P
Sbjct: 73 LLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGSGCGSR---AGLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRGG--GLTGADCCTSDISNL---CSVTGAAPCIVDGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGDYCCSAGCVECGGSGCSDRG--GGLTGADCCTSDISN---LCSVTGAAPCIVDGDTSP 299
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 134 bits (337), Expect = 3.710e-31 Identity = 79/220 (35.91%), Postives = 106/220 (48.18%), Query Frame = 1
Query: 109 TAQMCSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGEPST-----------------CSNGVFGVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCI 717
T MC G+ G++ SDVCC A CG+CGG+GC R G CC G +R + YC +G APC+ + +C G+ GI+ VCC A C C G+GC G CC G + +S C V+G APC G T C G+ G++ CC CG+CGG GC +R +G CC G + S +C V+ APC+
Sbjct: 42 TVSMCDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGGSGA----CCGGGVRASGRYCSVTGEAPCM--TVPMC-DGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSGA----CCGGGVQASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGA----CCGGGVRASGRYCSVTGEAPCM 246
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 131 bits (329), Expect = 8.450e-30 Identity = 82/246 (33.33%), Postives = 112/246 (45.53%), Query Frame = 1
Query: 118 MCSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGS----------------DSICISNGLSGIENDGVCCVAECPQCGGSGC-----GSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGEPST-----------------CSNGVFGVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIIDGPCGPA 741
MC G+ G++ SDVCC A CG+CGGSGC R ++ CC G +R + YC +G APC+ G + G+ GI++ VCC A C CGGSGC GSE+ CC G + +S C ++G APC G T C G+ G+++ CC CG+CGG GC R + + CC G + S +C V+ APC+ PA
Sbjct: 157 MCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGG----SESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGSES---------CCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGS----ESCCGGGVRGSGRYCSVTGEAPCMTGAAPTPA 385
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.440e-28 Identity = 80/227 (35.24%), Postives = 114/227 (50.22%), Query Frame = 1
Query: 118 MCSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGEPST-----------------CSNGVFGVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIIDGPCGPALT 747
MC + G+++SDVCC A CG+CGGSGC R ++ CC G +R + YC +G APC+ + +C + + GI++ VCC A C CGGSGC + G S S CC G + +S C ++G APC G T C + G+++ CC CG+CGG GC R + + CC G + S +C ++ APC+ GPA T
Sbjct: 1 MCDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGG----SESCCGGGVRASGRYCSITGEAPCM--TVPMCDGD-IVGIQSSDVCCSASCGSCGGSGC---TERDGGSES-CCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGS----ESCCGGGVRASGRYCSITGEAPCMT----GPAPT 208
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 123 bits (308), Expect = 4.360e-27 Identity = 81/229 (35.37%), Postives = 102/229 (44.54%), Query Frame = 1
Query: 121 CSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDSICISNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGEPST----------------------------CSNGVFGVEAGGACCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIID 723
CSNGL G+E VCC ECGTCGG+GCGSR GLT DCC I++ N C + APC+I ++ +G+ +CC A C CGG+GC GLS +CC I +++ CD APC + S GV G CC CGTCGG GCG R D CC S C V+ +PC++D
Sbjct: 24 CSNGLSGLEKGGVCCPVECGTCGGTGCGSR---PGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEETEADPTCSNGVAKGDICCSAGCGYCGGTGCAGRG---GLSGDECCTSKIAAANKSCDDQ-SAPCVMSGNSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCGGVAKGAYCCNAGCGTCGGTGCGMR-------GDGCCTSDAALS--LCSVTGMSPCLMD 236
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 117 bits (293), Expect = 2.830e-25 Identity = 66/141 (46.81%), Postives = 81/141 (57.45%), Query Frame = 1
Query: 331 SNGLSGIENDGV-CCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNIGEP----STCSNGVFGVEAGGA-CCVTQCGTCGGVGCGARATAAGLTADDCCIGRILNSNVFCDVSDTAPCIIDGPCG 735
SNGL GIE +GV CC EC QCGG+GC + GL S CC G I +S CD + APC IG TCSNG+ G++ G CC +C CGG GC +AAGL ++ CC G I S +CD ++ APCII G
Sbjct: 473 SNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRPTTVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSSSG 613
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 3.830e-19 Identity = 57/157 (36.31%), Postives = 77/157 (49.04%), Query Frame = 1
Query: 100 VSNTAQMCSNGLDGVENSDVCCVAECGTCGGSGCGSRGQAVGLTADDCCVGRIRDANVYCDDSGAAPCIIGSDS------------------ICISNGLSGIENDGVCCVAECPQCGGSGCGSEAQSVGLSSSDCCRGPIISSDVDCDVSGMAPCNI 516
V+ +CSNG+ GV++ CC+AECG CGGSGC G GL +CC G I + C APC++ + + +C SNG GI++ CC+AEC +CGG GCG GL + CC I C ++ APC I
Sbjct: 28 VTEPTDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGG--GLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVTEPTDVC-SNGFPGIQSGVSCCLAECGECGGRGCGEFGG--GLGADKCCESDIEEYGELCSIALAAPCYI 179 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1383.2774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1383.2774.1 >prot_F-serratus_M_contig1383.2774.1 ID=prot_F-serratus_M_contig1383.2774.1|Name=mRNA_F-serratus_M_contig1383.2774.1|organism=Fucus serratus male|type=polypeptide|length=360bp RVAAQTIRQAEEGFNITMWSTRWLFVLLGLLMVVSNTAQMCSNGLDGVENback to top mRNA from alignment at F-serratus_M_contig1383:225844..228906- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1383.2774.1 ID=mRNA_F-serratus_M_contig1383.2774.1|Name=mRNA_F-serratus_M_contig1383.2774.1|organism=Fucus serratus male|type=mRNA|length=3063bp|location=Sequence derived from alignment at F-serratus_M_contig1383:225844..228906- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1383:225844..228906- >mRNA_F-serratus_M_contig1383.2774.1 ID=mRNA_F-serratus_M_contig1383.2774.1|Name=mRNA_F-serratus_M_contig1383.2774.1|organism=Fucus serratus male|type=CDS|length=2160bp|location=Sequence derived from alignment at F-serratus_M_contig1383:225844..228906- (Fucus serratus male)back to top |