mRNA_F-serratus_M_contig1360.2657.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1360.2657.1
Unique NamemRNA_F-serratus_M_contig1360.2657.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A235HSJ8_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. 'Peltigera membranacea cyanobiont' 213 TaxID=2014530 RepID=A0A235HSJ8_9NOSO)

HSP 1 Score: 65.5 bits (158), Expect = 2.970e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLRH 174
            HPDVA+SL+NLA L  SQG Y DAEPLY   LA+ +  +G  HPNT     NLA L+H
Sbjct:   12 HPDVASSLNNLASLYDSQGRYSDAEPLYIEALAMCQRVLGVNHPNTAKVQKNLAILQH 69          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A1U7GY10_9NOSO (Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 RepID=A0A1U7GY10_9NOSO)

HSP 1 Score: 63.2 bits (152), Expect = 2.400e-11
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLRHLQVMR 189
            HPDVATSL+NLA L  SQG Y DAEPLY+  LA+ +  +G  HP T     NLA L+     R
Sbjct:   12 HPDVATSLNNLAGLYYSQGRYSDAEPLYSDALAMCQRVLGVNHPTTATIRENLAILQRQSTPR 74          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: UPI00168570C4 (Tetratricopeptide repeat protein n=1 Tax=Nostoc sp. FACHB-892 TaxID=2692843 RepID=UPI00168570C4)

HSP 1 Score: 62.4 bits (150), Expect = 7.410e-11
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLR 171
            HPDVATSL+NLA L +SQG   +AEPLY + L I E  +G  HPNT     NLA LR
Sbjct:   70 HPDVATSLNNLASLYKSQGGCSEAEPLYIQALDILERRLGVNHPNTLACRKNLADLR 126          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A1B7VCZ1_9NOST (Uncharacterized protein (Fragment) n=1 Tax=Anabaena sp. LE011-02 TaxID=1710892 RepID=A0A1B7VCZ1_9NOST)

HSP 1 Score: 60.5 bits (145), Expect = 9.950e-11
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLR 171
            HPDVA+SL+NLA L  SQG Y +AEPLY + L I E+ +G  HP+T +   NL  LR
Sbjct:    9 HPDVASSLNNLAGLYYSQGKYNEAEPLYQQALNIFEQRLGVDHPHTIIVRGNLEHLR 65          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: UPI001ABB5345 (tetratricopeptide repeat protein n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001ABB5345)

HSP 1 Score: 60.8 bits (146), Expect = 1.430e-10
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLR 171
            HPDVATSL+NLA+L  SQG Y +AEPL+   L I E ++   HPNT     NL  LR
Sbjct:   17 HPDVATSLNNLALLYNSQGRYNEAEPLHQEALKIAEVSLDVNHPNTITIRGNLKYLR 73          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A3E0ME31_MICAE (Tetratricopeptide repeat-containing protein (Fragment) n=2 Tax=Microcystis TaxID=1125 RepID=A0A3E0ME31_MICAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGL 168
            HPDVA+SL+NLA L +SQG Y +AEPL+ + LAI E+ +   HP T     NL  L
Sbjct:    8 HPDVASSLNNLASLYESQGRYKEAEPLFLQALAIAEQALEENHPTTVKIRENLESL 63          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.020e-10
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQG----------NYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLRHLQVMR 189
            HPDVA SL+NLA +L+SQ           N+ DAEPLY R LAI E+  GP HP     L+N A L  +Q +R
Sbjct:   88 HPDVAESLNNLAGVLRSQASVNPVFEILRNFQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAALYEVQAIR 160          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A7I8EIG7_9CHLR (Tetratricopeptide repeat protein n=1 Tax=Ktedonobacteria bacterium brp13 TaxID=2717365 RepID=A0A7I8EIG7_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 7.680e-10
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGLRHLQVMRH 192
            HP  A SL+NLA L  +QG   +AEPLY R LAI E  +G  HPN+     N A L  LQ M H
Sbjct:   52 HPGTAASLNNLASLYDTQGKDTEAEPLYQRALAIFENILGQNHPNSQTVRRNYASL--LQAMEH 113          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: A0A3B8JJF2_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.640e-9
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   28 NLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSLHNLAGL 168
            NLA L + QGNY  AEPLY R LAI E+ +G  HPN   SL+NLA L
Sbjct:    1 NLAALYKVQGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47          
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Match: UPI001A8F76AC (tetratricopeptide repeat protein n=1 Tax=Vibrio alginolyticus TaxID=663 RepID=UPI001A8F76AC)

HSP 1 Score: 57.4 bits (137), Expect = 2.790e-9
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    1 HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRH 129
            HPDVATSL+NLA L ++QG Y  AEPLY R LA+ E+ +GP H
Sbjct:    1 HPDVATSLNNLAELYRAQGQYALAEPLYKRSLAVLEKALGPDH 43          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1360.2657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A235HSJ8_9NOSO2.970e-1256.90Uncharacterized protein n=1 Tax=Nostoc sp. 'Peltig... [more]
A0A1U7GY10_9NOSO2.400e-1152.38Uncharacterized protein n=2 Tax=Nostoc TaxID=1177 ... [more]
UPI00168570C47.410e-1157.89Tetratricopeptide repeat protein n=1 Tax=Nostoc sp... [more]
A0A1B7VCZ1_9NOST9.950e-1154.39Uncharacterized protein (Fragment) n=1 Tax=Anabaen... [more]
UPI001ABB53451.430e-1054.39tetratricopeptide repeat protein n=1 Tax=Aetokthon... [more]
A0A3E0ME31_MICAE1.870e-1051.79Tetratricopeptide repeat-containing protein (Fragm... [more]
A0A6H5LI51_9PHAE3.020e-1047.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7I8EIG7_9CHLR7.680e-1050.00Tetratricopeptide repeat protein n=1 Tax=Ktedonoba... [more]
A0A3B8JJF2_9CYAN1.640e-959.57Tetratricopeptide repeat-containing protein (Fragm... [more]
UPI001A8F76AC2.790e-962.79tetratricopeptide repeat protein n=1 Tax=Vibrio al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1360contigF-serratus_M_contig1360:192111..192977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog2880.D7G180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.0674322-CDS-F-serratus_M_contig1360:192110..1922511622929342.0674322-CDS-F-serratus_M_contig1360:192110..192251Fucus serratus maleCDSF-serratus_M_contig1360 192111..192251 -
1690962806.7999709-CDS-F-serratus_M_contig1360:192110..1922511690962806.7999709-CDS-F-serratus_M_contig1360:192110..192251Fucus serratus maleCDSF-serratus_M_contig1360 192111..192251 -
1622929342.0789042-CDS-F-serratus_M_contig1360:192923..1929771622929342.0789042-CDS-F-serratus_M_contig1360:192923..192977Fucus serratus maleCDSF-serratus_M_contig1360 192924..192977 -
1690962806.810699-CDS-F-serratus_M_contig1360:192923..1929771690962806.810699-CDS-F-serratus_M_contig1360:192923..192977Fucus serratus maleCDSF-serratus_M_contig1360 192924..192977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1360.2657.1prot_F-serratus_M_contig1360.2657.1Fucus serratus malepolypeptideF-serratus_M_contig1360 192111..192977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1360.2657.1

>prot_F-serratus_M_contig1360.2657.1 ID=prot_F-serratus_M_contig1360.2657.1|Name=mRNA_F-serratus_M_contig1360.2657.1|organism=Fucus serratus male|type=polypeptide|length=65bp
HPDVATSLDNLAVLLQSQGNYVDAEPLYNRVLAIGEETVGPRHPNTTLSL
HNLAGLRHLQVMRH*
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mRNA from alignment at F-serratus_M_contig1360:192111..192977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1360.2657.1 ID=mRNA_F-serratus_M_contig1360.2657.1|Name=mRNA_F-serratus_M_contig1360.2657.1|organism=Fucus serratus male|type=mRNA|length=867bp|location=Sequence derived from alignment at F-serratus_M_contig1360:192111..192977- (Fucus serratus male)
CATCCGGATGTGGCTACAAGTCTGGACAACCTGGCGGTTTTGCTTCAATC GCAGGTAATGTGACATTGACCAAGATCCTTCGACTCGTCGTTCGGTATTT CGTATGTTTGTGAGTAGGGTTGAAGCTGAACGAAGGACATGACCTGTCAA CCAAGCATCTATGTGAGAGCAGAAAGTTTCATTTACGCTCGTTTTTTAGA ACGGGCGGGGGTAATCTGGGAGGACATTTTGCGAACTTTGTTAAACAGTC ATTTCAGTGGGCACTTCGTTGGGGAAACGAGACGACGTGGTTAACCTCTT CACCCGCCTGAGTTATGATCATCACCATTACGTTTTTTTCTCGCAAATCA GGGCAAGTACGACGGCGCTGAGCTGCTTAACAAACGTGCTCTTGTCATCC GTGAGCAAACGTTAGGTCCTCGACATCCGGATGTGGCTAGAAATCTGAAC AACCTGGCGTTTTTACTGCAATCACAGGTAATGTGGCATCGACCGAGATC CTTCGACTCAACGTTCGTTATTTCGTATGTGAGTAGGGCTGAAGCTGAAC GAAGGACATAACCTATCACTCAAGCACCTGTGTGAGACGCGGAAATGTTC ATTTGCGCCGATTCTTGGGGATTGATGGGGGTGATCTAGGAAGACTATTT GCAAATTCTGTAAAACAGTCGCTTCAGTGGCCACCTCGTTATGATTACCA CCATCACGTTTTTAATCGCAAATCAGGGCAATTACGTCGACGCCGAGCCA CTTTACAATCGCGTTCTCGCCATCGGAGAGGAAACTGTAGGCCCTCGACA TCCGAATACGACTTTAAGTCTGCACAACCTGGCGGGTTTGCGGCATTTAC AGGTGATGCGGCATTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1360:192111..192977-

>mRNA_F-serratus_M_contig1360.2657.1 ID=mRNA_F-serratus_M_contig1360.2657.1|Name=mRNA_F-serratus_M_contig1360.2657.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig1360:192111..192977- (Fucus serratus male)
CATCCGGATGTGGCTACAAGTCTGGACAACCTGGCGGTTTTGCTTCAATC
GCAGCATCCGGATGTGGCTACAAGTCTGGACAACCTGGCGGTTTTGCTTC
AATCGCAGGGCAATTACGTCGACGCCGAGCCACTTTACAATCGCGTTCTC
GCCATCGGAGAGGAAACTGTAGGCCCTCGACATCCGAATACGACTTTAAG
TCTGCACAACCTGGCGGGTTTGCGGCATTTACAGGTGATGCGGCATTGAG
GCAATTACGTCGACGCCGAGCCACTTTACAATCGCGTTCTCGCCATCGGA
GAGGAAACTGTAGGCCCTCGACATCCGAATACGACTTTAAGTCTGCACAA
CCTGGCGGGTTTGCGGCATTTACAGGTGATGCGGCATTGA
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