prot_F-serratus_M_contig102.274.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig102.274.1
Unique Nameprot_F-serratus_M_contig102.274.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length221
Homology
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BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Match: A0A6H5JTI3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.830e-19
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 0 
Query:  102 VLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTATTDGWIRDTSTILNASSGESKAVDE 174
            VLRQ QQ+   KPDPCSL  A+EMCCRAG+LDHAR+++PHL AL+G    D WIR+T  I NA  G+ +A DE
Sbjct:  656 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEARDE 728
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BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Match: D7FQT1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.620e-19
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0 
Query:  102 VLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTATTDGWIRDTSTILNASSGESKAVDEAIRYVNG 181
            VLRQ QQ+   KPDPCSL  A+EMCCRAG+LDHAR+++PHL AL+G    D WIR+T  I NA  G+ +A +E    VNG
Sbjct:  348 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEAREEPA--VNG 425
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTI3_9PHAE1.830e-1960.27PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7FQT1_ECTSI3.620e-1957.50PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 120..138
e-value: 0.77
score: 10.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..55
e-value: 5.2E-6
score: 26.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 9.624
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.12
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 115..149
score: 7.037
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..202
e-value: 6.0E-28
score: 100.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:810574..812276 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.274.1mRNA_F-serratus_M_contig102.274.1Fucus serratus malemRNAF-serratus_M_contig102 809878..812281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig102.274.1 ID=prot_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MTRYGVRPNEKFFMALLRATGEGGRADKTMDTLREMTKMGVTPSVRSYNC
AVGACATAGGWQLAVTLLSEMLQGGMHPAGFAVASTIRACGIANEWRKGL
QVLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTAT
TDGWIRDTSTILNASSGESKAVDEAIRYVNGDGVDVNRNDGRGWQKQRER
RLFKLFRAHSGKGTSPVGAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf