mRNA_F-serratus_M_contig102.274.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.274.1
Unique NamemRNA_F-serratus_M_contig102.274.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Match: A0A6H5JTI3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.770e-18
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 3 
Query:  309 VLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTATTDGWIRDTSTILNASSGESKAVDE 527
            VLRQ QQ+   KPDPCSL  A+EMCCRAG+LDHAR+++PHL AL+G    D WIR+T  I NA  G+ +A DE
Sbjct:  656 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEARDE 728
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BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Match: D7FQT1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.110e-18
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:  309 VLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTATTDGWIRDTSTILNASSGESKAVDEAIRYVNG 548
            VLRQ QQ+   KPDPCSL  A+EMCCRAG+LDHAR+++PHL AL+G    D WIR+T  I NA  G+ +A +E    VNG
Sbjct:  348 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEAREEPA--VNG 425
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTI3_9PHAE1.770e-1860.27PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7FQT1_ECTSI3.110e-1857.50PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:809878..812281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7FQT1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000625.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size953
Cds size663
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.7762141-UTR-F-serratus_M_contig102:809877..8100511622928818.7762141-UTR-F-serratus_M_contig102:809877..810051Fucus serratus maleUTRF-serratus_M_contig102 809878..810051 -
1690962586.5236437-UTR-F-serratus_M_contig102:809877..8100511690962586.5236437-UTR-F-serratus_M_contig102:809877..810051Fucus serratus maleUTRF-serratus_M_contig102 809878..810051 -
1622928818.7865171-UTR-F-serratus_M_contig102:810462..8105731622928818.7865171-UTR-F-serratus_M_contig102:810462..810573Fucus serratus maleUTRF-serratus_M_contig102 810463..810573 -
1690962586.5414755-UTR-F-serratus_M_contig102:810462..8105731690962586.5414755-UTR-F-serratus_M_contig102:810462..810573Fucus serratus maleUTRF-serratus_M_contig102 810463..810573 -
1622928818.8959963-UTR-F-serratus_M_contig102:812276..8122811622928818.8959963-UTR-F-serratus_M_contig102:812276..812281Fucus serratus maleUTRF-serratus_M_contig102 812277..812281 -
1690962586.616162-UTR-F-serratus_M_contig102:812276..8122811690962586.616162-UTR-F-serratus_M_contig102:812276..812281Fucus serratus maleUTRF-serratus_M_contig102 812277..812281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.803329-CDS-F-serratus_M_contig102:810573..8106111622928818.803329-CDS-F-serratus_M_contig102:810573..810611Fucus serratus maleCDSF-serratus_M_contig102 810574..810611 -
1690962586.553116-CDS-F-serratus_M_contig102:810573..8106111690962586.553116-CDS-F-serratus_M_contig102:810573..810611Fucus serratus maleCDSF-serratus_M_contig102 810574..810611 -
1622928818.8174791-CDS-F-serratus_M_contig102:810896..8109441622928818.8174791-CDS-F-serratus_M_contig102:810896..810944Fucus serratus maleCDSF-serratus_M_contig102 810897..810944 -
1690962586.568736-CDS-F-serratus_M_contig102:810896..8109441690962586.568736-CDS-F-serratus_M_contig102:810896..810944Fucus serratus maleCDSF-serratus_M_contig102 810897..810944 -
1622928818.831534-CDS-F-serratus_M_contig102:810961..8110391622928818.831534-CDS-F-serratus_M_contig102:810961..811039Fucus serratus maleCDSF-serratus_M_contig102 810962..811039 -
1690962586.5810707-CDS-F-serratus_M_contig102:810961..8110391690962586.5810707-CDS-F-serratus_M_contig102:810961..811039Fucus serratus maleCDSF-serratus_M_contig102 810962..811039 -
1622928818.8532727-CDS-F-serratus_M_contig102:811421..8115241622928818.8532727-CDS-F-serratus_M_contig102:811421..811524Fucus serratus maleCDSF-serratus_M_contig102 811422..811524 -
1690962586.5900955-CDS-F-serratus_M_contig102:811421..8115241690962586.5900955-CDS-F-serratus_M_contig102:811421..811524Fucus serratus maleCDSF-serratus_M_contig102 811422..811524 -
1622928818.8688898-CDS-F-serratus_M_contig102:811707..8119321622928818.8688898-CDS-F-serratus_M_contig102:811707..811932Fucus serratus maleCDSF-serratus_M_contig102 811708..811932 -
1690962586.600908-CDS-F-serratus_M_contig102:811707..8119321690962586.600908-CDS-F-serratus_M_contig102:811707..811932Fucus serratus maleCDSF-serratus_M_contig102 811708..811932 -
1622928818.8801942-CDS-F-serratus_M_contig102:812105..8122761622928818.8801942-CDS-F-serratus_M_contig102:812105..812276Fucus serratus maleCDSF-serratus_M_contig102 812106..812276 -
1690962586.608688-CDS-F-serratus_M_contig102:812105..8122761690962586.608688-CDS-F-serratus_M_contig102:812105..812276Fucus serratus maleCDSF-serratus_M_contig102 812106..812276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.274.1prot_F-serratus_M_contig102.274.1Fucus serratus malepolypeptideF-serratus_M_contig102 810574..812276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.274.1

>prot_F-serratus_M_contig102.274.1 ID=prot_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MTRYGVRPNEKFFMALLRATGEGGRADKTMDTLREMTKMGVTPSVRSYNC
AVGACATAGGWQLAVTLLSEMLQGGMHPAGFAVASTIRACGIANEWRKGL
QVLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTAT
TDGWIRDTSTILNASSGESKAVDEAIRYVNGDGVDVNRNDGRGWQKQRER
RLFKLFRAHSGKGTSPVGAG*
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mRNA from alignment at F-serratus_M_contig102:809878..812281-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.274.1 ID=mRNA_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=mRNA|length=2404bp|location=Sequence derived from alignment at F-serratus_M_contig102:809878..812281- (Fucus serratus male)
AGGACATGACAAGATACGGCGTCCGGCCGAACGAAAAATTCTTCATGGCG
CTCCTCCGGGCAACAGGGGAAGGCGGTCGCGCCGACAAAACTATGGATAC
GTTGCGGGAGATGACGAAAATGGGTGTCACGCCGAGTGTCAGGAGCTACA
ATTGCGCCGTTGGGGCGTGTGCCACGGTACAGTACCGACACCGACAGCAC
AAACGATTCCATATCGACCTGTCCATGACACGGCTTTGTCGGAAATTCGT
CGTCGCAGACTCGGCAGAGAATAGGCGCGGTTGTTGCGTCTAATGAAGTC
TTGCTGTAATAAATACTAAACACTTTTACATGGTTTTGTTGCCTTGCAGG
CCGGAGGGTGGCAGCTGGCAGTAACCCTCTTGTCGGAGATGTTGCAAGGA
GGCATGCACCCGGCGGGATTTGCTGTTGCATCCACCATCCGAGCTTGCGG
TATAGCGAACGAGTGGCGGAAGGGCCTTCAAGTGCTGCGACAAGTACAGC
AAATCAACTCGTTCAAGCCAGACCCATGCAGTTTGAGCGTGGCGATAGAG
ATGTGCTGTCGGGCAGGGAGGCTGGTAAGTGTTACGCCGGTCGCTCAAAA
TTTGGTCCATGGATATCGCTTCTTTGGGGGTGCTCGATAGCGAGACTAGG
CATGTATGCAACGGACTACTCGGCGGTATGTAGCCGTGCTGTGTCGCATA
CTGGTACTTAGGTAGGTACTGTGTCCCCACTCTGCCCCCTTGTGCTGTGT
TGGACAGGACCATGCGCGAAGTTTAATGCCCCACTTACAAGCATTGTCGG
GGACCGCTACGACTGATGGTTGGATTCGCGACACATCTACCATCCTGAAT
GCGAGCTCAGGCGAGGCCCGATCCGAGCAAGTTGCTGTTAATACTCGGGG
AAGACCTTACCTGTCGCTGAGAGCATGCCTACCAATTACCAATTACTTTA
TTCGCCGCCAGTGACAGTTATCGCAATTAAATATTTGTTAGAACTACGAC
AAAATACTTGAGCATTGTACACCGTTTAAGAAATGTAACTTGTTATTTTT
TAGGCCACCGTCTTGTCTTTAAGATACTTGAAAGTAAATGATTGCTTCAT
GCGGATTTATGTGAGCAAGCAAGAGGACGTTGCAGTCCTTAGGATATAAT
ACTCTTTGATGCCCAGACGTGAATGCATCCATTTTCGAAAGGCTTGACCT
TTCTGACTTAACATTAGGGACTCATTTGCGCCACGGATGCAGGCGAATCA
AAGGCCGTTGACGAAGCGATTAGATACGTGAACGGAGATGGCGTGGATGT
CAACAGAAACGACGGCCGGGAGCTAATTGCGACTGCTGTTGGCAAAAACA
GCGCGAGAGGCGACTCTTCAAACTCTTCAGAGCGCGTTGAGTTCTGCAAT
GTGCCGGAGATAGTCCGGCTCCACTCCTAATAATACTGTGTAGCTCGAAA
GTCATATTGGGAGTGTCTGATGAAATAGCTCGGTAGGTATTATAGTCTTT
ACCGATTGTGCAGTTCTGTTCTGTAGTCAAGGCGTGCTCTGTCCTTGAGT
CTTGAGCTGAGCTGCCATGGTAATGCAACATTCATATTTTCATACGCTTC
ATGCGAAAATTCAGACGCCGTCCTGCATCGTGTTCCCGCTCGGACATTTG
TCTGTTGGGTCGATTGCCAGATTCAGGAAAAGGGACGAGCCCCGTGGGCG
CAGGATAAGCGCCTCAACAAGCGCTCGCTCAAGCGAATTCCGGTCGATAT
TAAAGAGGCTTCGCAGGGCGTTCGGCATGATGATCCAGAAGAGCTCCCGG
CAATTCGCTTTTACCGCAGGTGTGGCCGATGTCACGTTTTTGCTTTTTTC
GCAATCACGAGTGAACAAAACAAATGCCCAATAAGTGACCACATGTTTCG
ATGTCAATCTCTTTTGCGGTATATCTATCGATGATACATGATACATGGAA
TACGTGGTCACTTTGTGTTAATATTGGGATTTGCGACCAAGTCCTTCGAT
ATCACCTGAGTGTCGGCATACTCTGTCTTATTACGAGAAATCCTGCAGGC
ACGTCCCTTCATAATCCCCATTCGAATCTACGCAGTAGTATGTTCCTTGC
GATAATGTATACCAGGTACACTTTAACTCAGCCCCTCCCTCTCCCTCTCC
CTCGCTGATGCATTGCATTGCATTACATTACATTGCCTGTGGTATGAAAT
CACGACCTCACCGTGGCCTCGTACAAACAGGCACACAAGTCTTGCGAACT
GATGTGCGGCGTGATCGGCGAAGTGAATAAGCCAATTAAGTCGCTAGCTA
GCTTATCACATCACGCGCGAGGGACGTTACATAGACCAAGCATCTGCGAA
CTTTTGTATTGAGGTTATCCCACGGTGATAAACACACAAATCGCACCAGG
GGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:809878..812281-

>mRNA_F-serratus_M_contig102.274.1 ID=mRNA_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig102:809878..812281- (Fucus serratus male)
ATGACAAGATACGGCGTCCGGCCGAACGAAAAATTCTTCATGGCGCTCCT
CCGGGCAACAGGGGAAGGCGGTCGCGCCGACAAAACTATGGATACGTTGC
GGGAGATGACGAAAATGGGTGTCACGCCGAGTGTCAGGAGCTACAATTGC
GCCGTTGGGGCGTGTGCCACGATGACAAGATACGGCGTCCGGCCGAACGA
AAAATTCTTCATGGCGCTCCTCCGGGCAACAGGGGAAGGCGGTCGCGCCG
ACAAAACTATGGATACGTTGCGGGAGATGACGAAAATGGGTGTCACGCCG
AGTGTCAGGAGCTACAATTGCGCCGTTGGGGCGTGTGCCACGGCCGGAGG
GTGGCAGCTGGCAGTAACCCTCTTGTCGGAGATGTTGCAAGGAGGCATGC
ACCCGGCGGGATTTGCTGTTGCATCCACCATCCGAGCTTGCGGTATAGCG
AACGAGTGGCGGAAGGGCCTTCAAGTGCTGCGACAAGTACAGCAAATCAA
CTCGTTCAAGCCAGACCCATGCAGTTTGAGCGTGGCGATAGAGATGTGCT
GTCGGGCAGGGAGGCTGGCCGGAGGGTGGCAGCTGGCAGTAACCCTCTTG
TCGGAGATGTTGCAAGGAGGCATGCACCCGGCGGGATTTGCTGTTGCATC
CACCATCCGAGCTTGCGGTATAGCGAACGAGTGGCGGAAGGGCCTTCAAG
TGCTGCGACAAGTACAGCAAATCAACTCGTTCAAGCCAGACCCATGCAGT
TTGAGCGTGGCGATAGAGATGTGCTGTCGGGCAGGGAGGCTGGACCATGC
GCGAAGTTTAATGCCCCACTTACAAGCATTGTCGGGGACCGCTACGACTG
ATGGTTGGATTCGCGACACATCTACCATCCTGAATGCGAGCTCAGGACCA
TGCGCGAAGTTTAATGCCCCACTTACAAGCATTGTCGGGGACCGCTACGA
CTGATGGTTGGATTCGCGACACATCTACCATCCTGAATGCGAGCTCAGGC
GAATCAAAGGCCGTTGACGAAGCGATTAGATACGTGAACGGAGATGGCGT
GGATGTCAACAGAAACGACGGCCGGGGCGAATCAAAGGCCGTTGACGAAG
CGATTAGATACGTGAACGGAGATGGCGTGGATGTCAACAGAAACGACGGC
CGGGGTTGGCAAAAACAGCGCGAGAGGCGACTCTTCAAACTCTTCAGAGC
GCGTTGGCAAAAACAGCGCGAGAGGCGACTCTTCAAACTCTTCAGAGCGC
ATTCAGGAAAAGGGACGAGCCCCGTGGGCGCAGGATAAATTCAGGAAAAG
GGACGAGCCCCGTGGGCGCAGGATAA
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