mRNA_F-serratus_M_contig1320.2400.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.290e-56 Identity = 102/140 (72.86%), Postives = 113/140 (80.71%), Query Frame = 1
Query: 1 MASKRTFDGQLQTQEGGGRGKGSNCFKRPRRTAA-DPKERVRAHAEAKMSEVLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 417
MASKR + G GG + KRPRRTAA DP+ER RA AEA+M++V+SSLMKHKHA LFL PVDP TAP Y+KYV+TPMDLGTI +KL+AGGFAGDI F AQVRLVFANCLAYNPPGDWARAWGESCGGAFEA
Sbjct: 1 MASKRPY-GDGFGGYSGGXXXXXDSLKRPRRTAAADPEERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPSYEKYVQTPMDLGTIDRKLQAGGFAGDILGFAAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 139
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE) HSP 1 Score: 184 bits (468), Expect = 7.950e-52 Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 1
Query: 103 DPKERVRAHAEAKMSEVLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 417
+P+ER RA AEA+M++V+SSLMKHKHA LFL PVDP TAPGY+KYV+TPMDLGTI +KL+ GGFAGDI F AQVRLVFANCLAYNPPGDWARAWGESCGGAFEA
Sbjct: 50 NPQERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPGYEKYVQTPMDLGTINRKLRTGGFAGDILGFAAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 154
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: C1EI63_MICCC (Bromodomain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EI63_MICCC) HSP 1 Score: 85.5 bits (210), Expect = 6.870e-18 Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 103 DPKERVRAHAEAKMSEVLSSLMKHKHASLFLTPVDPSTA--PGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFE 414
D +E + + ++ +V+++L +H+ +F PVDP P Y V+TPMDLGT+A K++ G + GD+ F RLVF+NC AYNPPG A G++ F+
Sbjct: 72 DEEEILNDDLKGRLEKVINALQRHRFYFIFAQPVDPVALNIPDYFDVVKTPMDLGTVANKVRNGAYKGDVTDFEDDARLVFSNCRAYNPPGSDAATMGDAVEKEFD 177
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A7S0I7U8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I7U8_MICPS) HSP 1 Score: 84.3 bits (207), Expect = 7.740e-17 Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 133 EAKMSEVLSSLMKHKHASLFLTPVDPSTA--PGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFE 414
+ ++ +V+++L +H+ +F PVDP P Y V+TPMDLGT+A K++ G + GD+ F + RLVF+NC AYNPPG A G++ F+
Sbjct: 167 KGRLEKVMNALQRHRFYFIFAQPVDPVALNIPDYFDVVKTPMDLGTVANKVRDGAYKGDVFDFEDEARLVFSNCRAYNPPGSDAATMGDAVEKEFD 262
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A1Y2FMN7_9FUNG (Transcription initiation factor TFIID subunit 2 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FMN7_9FUNG) HSP 1 Score: 84.0 bits (206), Expect = 4.390e-16 Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 124 AHAEAKMSEVLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGE 393
++ ++++ ++S L H + +FL PVDP P Y K++R PMDL TI KKL + I F + + L+F+NC YNPPG WAR G+
Sbjct: 2327 SNIKSQLLTIVSKLQSHSCSQIFLEPVDPKQFPDYHKFIRNPMDLSTIKKKLDKNKYKS-IEDFKSDISLIFSNCNIYNPPGSWAREQGQ 2415
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A0C9MZ53_9FUNG (Uncharacterized protein n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9MZ53_9FUNG) HSP 1 Score: 77.4 bits (189), Expect = 7.840e-14 Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 145 SEVLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGD 372
S+ + SL KHK A FL PVDP P Y +++PMDLGT+ KKLKA + ++ AF A V+LVF NC YN PGD
Sbjct: 47 SQTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDIIKSPMDLGTVEKKLKADMYP-NVAAFKADVQLVFQNCYLYNNPGD 123
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A8H4BPQ4_MUCCL (Bromodomain-containing protein n=3 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A8H4BPQ4_MUCCL) HSP 1 Score: 77.0 bits (188), Expect = 1.020e-13 Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 148 EVLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGD 372
+ + SL KHK A FL PVDP P Y +++PMDLGT+ +KLKA + D+ AF A V+LVF NC YN PGD
Sbjct: 11 QTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDIIKSPMDLGTVERKLKADQYP-DVAAFKADVQLVFQNCYLYNNPGD 86
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: S2JST9_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JST9_MUCC1) HSP 1 Score: 77.0 bits (188), Expect = 1.070e-13 Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 145 SEVLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGD 372
S+ + SL KHK A FL PVDP P Y +++PMDLGT+ KKLKA + + AF A V+LVF NC YN PGD
Sbjct: 47 SQTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDVIKSPMDLGTVEKKLKADQYP-TVAAFKADVQLVFQNCYLYNNPGD 123
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A7S0R5Q0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R5Q0_9CHLO) HSP 1 Score: 73.6 bits (179), Expect = 2.540e-13 Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 139 KMSEVLSSLMKHKHASL-FLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGES 396
K ++ L ++M ++ F+ PV+ APGY V+TPMDLGTIA KLK G+A + + F A V LV+ NC AYNP GD R +G +
Sbjct: 61 KGADALKAVMSNRKFGFPFVRPVNIKEAPGYLDVVKTPMDLGTIAAKLKKKGYANEAQ-FLADVELVWRNCYAYNPEGDEFRDFGRA 146
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: B0EP43_ENTDS (Bromodomain-containing protein, putative n=8 Tax=Entamoeba TaxID=5758 RepID=B0EP43_ENTDS) HSP 1 Score: 71.2 bits (173), Expect = 4.070e-12 Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 151 VLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFE 414
V+ LMK + +F+ PVDP P Y + ++TPMDLGT+ KK+K + I F+ VRL F N + +NPPG++ ++ E FE
Sbjct: 71 VMKQLMKVSESEVFMEPVDPEIWNIPNYFEIIKTPMDLGTVIKKIKKNMYYS-IDQFSNDVRLTFTNAMTFNPPGNYVHSYAEKLYKIFE 159 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1320.2400.1 >prot_F-serratus_M_contig1320.2400.1 ID=prot_F-serratus_M_contig1320.2400.1|Name=mRNA_F-serratus_M_contig1320.2400.1|organism=Fucus serratus male|type=polypeptide|length=141bp MASKRTFDGQLQTQEGGGRGKGSNCFKRPRRTAADPKERVRAHAEAKMSEback to top mRNA from alignment at F-serratus_M_contig1320:172718..173882+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1320.2400.1 ID=mRNA_F-serratus_M_contig1320.2400.1|Name=mRNA_F-serratus_M_contig1320.2400.1|organism=Fucus serratus male|type=mRNA|length=1165bp|location=Sequence derived from alignment at F-serratus_M_contig1320:172718..173882+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1320:172718..173882+ >mRNA_F-serratus_M_contig1320.2400.1 ID=mRNA_F-serratus_M_contig1320.2400.1|Name=mRNA_F-serratus_M_contig1320.2400.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig1320:172718..173882+ (Fucus serratus male)back to top |