mRNA_F-serratus_M_contig1320.2400.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1320.2400.1
Unique NamemRNA_F-serratus_M_contig1320.2400.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 3.290e-56
Identity = 102/140 (72.86%), Postives = 113/140 (80.71%), Query Frame = 1
Query:    1 MASKRTFDGQLQTQEGGGRGKGSNCFKRPRRTAA-DPKERVRAHAEAKMSEVLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 417
            MASKR + G       GG     +  KRPRRTAA DP+ER RA AEA+M++V+SSLMKHKHA LFL PVDP TAP Y+KYV+TPMDLGTI +KL+AGGFAGDI  F AQVRLVFANCLAYNPPGDWARAWGESCGGAFEA
Sbjct:    1 MASKRPY-GDGFGGYSGGXXXXXDSLKRPRRTAAADPEERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPSYEKYVQTPMDLGTIDRKLQAGGFAGDILGFAAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 139          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A6H5KEY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY2_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 7.950e-52
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 1
Query:  103 DPKERVRAHAEAKMSEVLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 417
            +P+ER RA AEA+M++V+SSLMKHKHA LFL PVDP TAPGY+KYV+TPMDLGTI +KL+ GGFAGDI  F AQVRLVFANCLAYNPPGDWARAWGESCGGAFEA
Sbjct:   50 NPQERNRARAEARMADVMSSLMKHKHAGLFLAPVDPRTAPGYEKYVQTPMDLGTINRKLRTGGFAGDILGFAAQVRLVFANCLAYNPPGDWARAWGESCGGAFEA 154          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: C1EI63_MICCC (Bromodomain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EI63_MICCC)

HSP 1 Score: 85.5 bits (210), Expect = 6.870e-18
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  103 DPKERVRAHAEAKMSEVLSSLMKHKHASLFLTPVDPSTA--PGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFE 414
            D +E +    + ++ +V+++L +H+   +F  PVDP     P Y   V+TPMDLGT+A K++ G + GD+  F    RLVF+NC AYNPPG  A   G++    F+
Sbjct:   72 DEEEILNDDLKGRLEKVINALQRHRFYFIFAQPVDPVALNIPDYFDVVKTPMDLGTVANKVRNGAYKGDVTDFEDDARLVFSNCRAYNPPGSDAATMGDAVEKEFD 177          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A7S0I7U8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I7U8_MICPS)

HSP 1 Score: 84.3 bits (207), Expect = 7.740e-17
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  133 EAKMSEVLSSLMKHKHASLFLTPVDPSTA--PGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFE 414
            + ++ +V+++L +H+   +F  PVDP     P Y   V+TPMDLGT+A K++ G + GD+  F  + RLVF+NC AYNPPG  A   G++    F+
Sbjct:  167 KGRLEKVMNALQRHRFYFIFAQPVDPVALNIPDYFDVVKTPMDLGTVANKVRDGAYKGDVFDFEDEARLVFSNCRAYNPPGSDAATMGDAVEKEFD 262          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A1Y2FMN7_9FUNG (Transcription initiation factor TFIID subunit 2 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FMN7_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 4.390e-16
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  124 AHAEAKMSEVLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGE 393
            ++ ++++  ++S L  H  + +FL PVDP   P Y K++R PMDL TI KKL    +   I  F + + L+F+NC  YNPPG WAR  G+
Sbjct: 2327 SNIKSQLLTIVSKLQSHSCSQIFLEPVDPKQFPDYHKFIRNPMDLSTIKKKLDKNKYKS-IEDFKSDISLIFSNCNIYNPPGSWAREQGQ 2415          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A0C9MZ53_9FUNG (Uncharacterized protein n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9MZ53_9FUNG)

HSP 1 Score: 77.4 bits (189), Expect = 7.840e-14
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  145 SEVLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGD 372
            S+ + SL KHK A  FL PVDP     P Y   +++PMDLGT+ KKLKA  +  ++ AF A V+LVF NC  YN PGD
Sbjct:   47 SQTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDIIKSPMDLGTVEKKLKADMYP-NVAAFKADVQLVFQNCYLYNNPGD 123          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A8H4BPQ4_MUCCL (Bromodomain-containing protein n=3 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A8H4BPQ4_MUCCL)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-13
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1
Query:  148 EVLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGD 372
            + + SL KHK A  FL PVDP     P Y   +++PMDLGT+ +KLKA  +  D+ AF A V+LVF NC  YN PGD
Sbjct:   11 QTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDIIKSPMDLGTVERKLKADQYP-DVAAFKADVQLVFQNCYLYNNPGD 86          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: S2JST9_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JST9_MUCC1)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-13
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  145 SEVLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGD 372
            S+ + SL KHK A  FL PVDP     P Y   +++PMDLGT+ KKLKA  +   + AF A V+LVF NC  YN PGD
Sbjct:   47 SQTIKSLKKHKRAVAFLQPVDPVLFNIPDYFDVIKSPMDLGTVEKKLKADQYP-TVAAFKADVQLVFQNCYLYNNPGD 123          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: A0A7S0R5Q0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R5Q0_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 2.540e-13
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  139 KMSEVLSSLMKHKHASL-FLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGES 396
            K ++ L ++M ++     F+ PV+   APGY   V+TPMDLGTIA KLK  G+A + + F A V LV+ NC AYNP GD  R +G +
Sbjct:   61 KGADALKAVMSNRKFGFPFVRPVNIKEAPGYLDVVKTPMDLGTIAAKLKKKGYANEAQ-FLADVELVWRNCYAYNPEGDEFRDFGRA 146          
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Match: B0EP43_ENTDS (Bromodomain-containing protein, putative n=8 Tax=Entamoeba TaxID=5758 RepID=B0EP43_ENTDS)

HSP 1 Score: 71.2 bits (173), Expect = 4.070e-12
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  151 VLSSLMKHKHASLFLTPVDPS--TAPGYDKYVRTPMDLGTIAKKLKAGGFAGDIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFE 414
            V+  LMK   + +F+ PVDP     P Y + ++TPMDLGT+ KK+K   +   I  F+  VRL F N + +NPPG++  ++ E     FE
Sbjct:   71 VMKQLMKVSESEVFMEPVDPEIWNIPNYFEIIKTPMDLGTVIKKIKKNMYYS-IDQFSNDVRLTFTNAMTFNPPGNYVHSYAEKLYKIFE 159          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1320.2400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK0_ECTSI3.290e-5672.86Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEY2_9PHAE7.950e-5280.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
C1EI63_MICCC6.870e-1838.68Bromodomain-containing protein n=1 Tax=Micromonas ... [more]
A0A7S0I7U8_MICPS7.740e-1740.63Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A1Y2FMN7_9FUNG4.390e-1641.11Transcription initiation factor TFIID subunit 2 n=... [more]
A0A0C9MZ53_9FUNG7.840e-1451.28Uncharacterized protein n=1 Tax=Mucor ambiguus Tax... [more]
A0A8H4BPQ4_MUCCL1.020e-1350.65Bromodomain-containing protein n=3 Tax=Mucor circi... [more]
S2JST9_MUCC11.070e-1351.28Uncharacterized protein n=1 Tax=Mucor circinelloid... [more]
A0A7S0R5Q0_9CHLO2.540e-1345.98Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
B0EP43_ENTDS4.070e-1238.89Bromodomain-containing protein, putative n=8 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1320contigF-serratus_M_contig1320:172718..173882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue7.9e-49
Seed eggNOG ortholog2880.D8LBK0
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759,KOG2177@1,KOG2177@2759
Ec32 ortholog descriptionBromodomain
Ec32 orthologEc-27_003670.2
EC2.3.2.27
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Exons3
Model size423
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1320.2400.1prot_F-serratus_M_contig1320.2400.1Fucus serratus malepolypeptideF-serratus_M_contig1320 172718..173882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929288.7153485-CDS-F-serratus_M_contig1320:172717..1728281622929288.7153485-CDS-F-serratus_M_contig1320:172717..172828Fucus serratus maleCDSF-serratus_M_contig1320 172718..172828 +
1690962784.79238-CDS-F-serratus_M_contig1320:172717..1728281690962784.79238-CDS-F-serratus_M_contig1320:172717..172828Fucus serratus maleCDSF-serratus_M_contig1320 172718..172828 +
1622929288.7477028-CDS-F-serratus_M_contig1320:173218..1733971622929288.7477028-CDS-F-serratus_M_contig1320:173218..173397Fucus serratus maleCDSF-serratus_M_contig1320 173219..173397 +
1690962784.81177-CDS-F-serratus_M_contig1320:173218..1733971690962784.81177-CDS-F-serratus_M_contig1320:173218..173397Fucus serratus maleCDSF-serratus_M_contig1320 173219..173397 +
1622929288.7632453-CDS-F-serratus_M_contig1320:173749..1738821622929288.7632453-CDS-F-serratus_M_contig1320:173749..173882Fucus serratus maleCDSF-serratus_M_contig1320 173750..173882 +
1690962784.8226554-CDS-F-serratus_M_contig1320:173749..1738821690962784.8226554-CDS-F-serratus_M_contig1320:173749..173882Fucus serratus maleCDSF-serratus_M_contig1320 173750..173882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1320.2400.1

>prot_F-serratus_M_contig1320.2400.1 ID=prot_F-serratus_M_contig1320.2400.1|Name=mRNA_F-serratus_M_contig1320.2400.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MASKRTFDGQLQTQEGGGRGKGSNCFKRPRRTAADPKERVRAHAEAKMSE
VLSSLMKHKHASLFLTPVDPSTAPGYDKYVRTPMDLGTIAKKLKAGGFAG
DIRAFTAQVRLVFANCLAYNPPGDWARAWGESCGGAFEAS*
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mRNA from alignment at F-serratus_M_contig1320:172718..173882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1320.2400.1 ID=mRNA_F-serratus_M_contig1320.2400.1|Name=mRNA_F-serratus_M_contig1320.2400.1|organism=Fucus serratus male|type=mRNA|length=1165bp|location=Sequence derived from alignment at F-serratus_M_contig1320:172718..173882+ (Fucus serratus male)
ATGGCTTCAAAGCGGACATTCGACGGACAGCTCCAAACGCAAGAAGGAGG CGGTCGTGGGAAGGGCAGCAATTGCTTCAAGCGGCCTCGTCGCACGGCTG CGGACCCGAAGGTGCGAAGTTCGAAGGGGGGGATAGGATCTAGATACCGT AAACGCGCTCCTCTCACACATTGACGCCTCACTACTGTGATCCGAGTGAG TCTCCTCCGAAAAACGCAAGTCCCGCGAACAGCACTTGTTACTTGGAAAT CCCAGCCTTACCTCCACGGTCTACGTCTTCGGTTGTCCGACTGAACTCGA AGCCTAAAGCGATTTTAGCTCCTGAAGGCAATGTAGCCCGTCGGGTGAAT ATTTTCTGATCGAACACTACGCTGTCCTTCTACGTGAATTTGAGGAATAC TCTACTGCCGAGAGAATCATGTAGACAAACTACGGTTCCGCCGCCGACGG ACGGACGTTCCTAAGCTCCTTTCGCCATTTTTTTTATCGCGTGTCGAGCA GGAGCGTGTCCGAGCTCACGCTGAGGCCAAAATGAGCGAGGTACTGTCCA GCCTAATGAAGCATAAGCACGCGAGCCTGTTTCTCACCCCCGTGGACCCC AGCACCGCGCCGGGGTATGATAAGTACGTGCGGACGCCAATGGATCTTGG GACGATCGCTAAGAAGCTCAAGGCGGGCGGGTGAGGAGACCGGGTGGACG GTCGCCAATTCTGTTGTAGCAAACGTCTAACAACACACCGTGTTGTTCGG TGTCGCGTCTTAGGGTTAAAGGGATCGGCGTGTGTCACTTTGCGCTGTCG CGAGAGGTAAAACTTTGCACATCTCTGCTAGGCAGAACAAGACCCCGTCA GGGGTTGTTTTCCCAGATCTATCCCCGTGCGGCGATTCGTGCAGCAGCAG TGGCGGAGACCAGGCGTGAACTGTTGTGTTGGCCAGACGGCTACTGGTTC CGCCTCCACAGGACTTTTTTGTTGACGCCATCCCTCCCGCATGATGCCCC CCCGACGAACGCGGTGTAAAATATCGCGATAGCTTCGCCGGAGACATACG GGCCTTCACCGCCCAGGTTCGCCTGGTCTTTGCGAACTGCCTCGCCTACA ACCCACCCGGAGACTGGGCCAGGGCGTGGGGCGAGAGCTGCGGAGGCGCA TTTGAGGCGAGTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1320:172718..173882+

>mRNA_F-serratus_M_contig1320.2400.1 ID=mRNA_F-serratus_M_contig1320.2400.1|Name=mRNA_F-serratus_M_contig1320.2400.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig1320:172718..173882+ (Fucus serratus male)
ATGGCTTCAAAGCGGACATTCGACGGACAGCTCCAAACGCAAGAAGGAGG
CGGTCGTGGGAAGGGCAGCAATTGCTTCAAGCGGCCTCGTCGCACGGCTG
CGGACCCGAAGATGGCTTCAAAGCGGACATTCGACGGACAGCTCCAAACG
CAAGAAGGAGGCGGTCGTGGGAAGGGCAGCAATTGCTTCAAGCGGCCTCG
TCGCACGGCTGCGGACCCGAAGGAGCGTGTCCGAGCTCACGCTGAGGCCA
AAATGAGCGAGGTACTGTCCAGCCTAATGAAGCATAAGCACGCGAGCCTG
TTTCTCACCCCCGTGGACCCCAGCACCGCGCCGGGGTATGATAAGTACGT
GCGGACGCCAATGGATCTTGGGACGATCGCTAAGAAGCTCAAGGCGGGCG
GGAGCGTGTCCGAGCTCACGCTGAGGCCAAAATGAGCGAGGTACTGTCCA
GCCTAATGAAGCATAAGCACGCGAGCCTGTTTCTCACCCCCGTGGACCCC
AGCACCGCGCCGGGGTATGATAAGTACGTGCGGACGCCAATGGATCTTGG
GACGATCGCTAAGAAGCTCAAGGCGGGCGGCTTCGCCGGAGACATACGGG
CCTTCACCGCCCAGGTTCGCCTGGTCTTTGCGAACTGCCTCGCCTACAAC
CCACCCGGAGACTGGGCCAGGGCGTGGGGCGAGAGCTGCGGAGGCGCATT
TGAGGCGAGTTGACTTCGCCGGAGACATACGGGCCTTCACCGCCCAGGTT
CGCCTGGTCTTTGCGAACTGCCTCGCCTACAACCCACCCGGAGACTGGGC
CAGGGCGTGGGGCGAGAGCTGCGGAGGCGCATTTGAGGCGAGTTGA
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