prot_F-serratus_M_contig1014.232.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1014.232.1
Unique Nameprot_F-serratus_M_contig1014.232.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length291
Homology
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BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.060e-69
Identity = 138/276 (50.00%), Postives = 167/276 (60.51%), Query Frame = 0 
Query:   16 SRTGETKSTSAMENS---PSKDDVTE-------GFDFRAADSAFRRSWSMVASGVDQYIPYSLEMNVEEDGESAG-TCPPDEGYDSNGEVYDWDNFDSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIWRPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRY----VVHWDVSAEGDGHVEPT--RDWMALYRGRHQAELATRGRCASKTSFPWMVCPFLGCVSYLKSEFAVKRHIQTHKPQRKAR 274
            SR GE  +    E S   P    VTE       G DF+ A  AFR SWS+ A+GVD  +P +        G+  G +              D D   +    G+ W RVPDEVTLRVFSFMTPKR+ RL+CV+RAWRELL V  +WRPFFEARWPL ++ S+ DL GVS  L+  A+      +  KRRRR+    VVHW  S +  G  +P   RDWMALYR RH+AE A RGR A+KT FPW+VCPFLGCVS LKSEFAVKRH++THK  R+ R
Sbjct:  424 SRRGEPNAAGRREESKLGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLL--AEGLGSARKNAKRRRRHGKIGVVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKR 697
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BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 8.010e-35
Identity = 90/207 (43.48%), Postives = 113/207 (54.59%), Query Frame = 0 
Query:    9 ILRSSRISRTGETKSTSAMENS---PSKDDVTE-------GFDFRAADSAFRRSWSMVASGVDQYIPYSLEMNVEEDGESAG-TCPPDEGYDSNGEVYDWDNFDSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIWRPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRY----VVHW 200
            +LR  R SR GE  +      S   P    VTE       G DFR A  AFR +WS+ A+GVD  +P +        G+  G +              D D   +    G+ W RVPDEVT+RV SFMTPKR+ RL+CV+RAWRELL V  +WRPFFEARWPL ++ S+ DL GVS  L+  A+      +K KRRRR+    VVHW
Sbjct:  351 LLRPPRGSRRGEPNAAGRRTKSKLGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLL--AEGLGSARKKAKRRRRHGKIGVVHW 555
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS3_ECTSI1.060e-6950.00F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JX00_9PHAE8.010e-3543.48F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 111..151
e-value: 1.0E-6
score: 28.5
IPR001810F-box domainPROSITEPS50181FBOXcoord: 107..153
score: 10.425
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 245..267
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 98..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1014contigF-serratus_M_contig1014:122243..123690 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1014.232.1mRNA_F-serratus_M_contig1014.232.1Fucus serratus malemRNAF-serratus_M_contig1014 122011..123893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1014.232.1 ID=prot_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=polypeptide|length=291bp
MEALLESPILRSSRISRTGETKSTSAMENSPSKDDVTEGFDFRAADSAFR
RSWSMVASGVDQYIPYSLEMNVEEDGESAGTCPPDEGYDSNGEVYDWDNF
DSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIW
RPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRYVVHW
DVSAEGDGHVEPTRDWMALYRGRHQAELATRGRCASKTSFPWMVCPFLGC
VSYLKSEFAVKRHIQTHKPQRKARRRVRVRRLSAKCAKEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR013087Znf_C2H2_type
IPR036047F-box-like_dom_sf