mRNA_F-serratus_M_contig1014.232.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1014.232.1
Unique NamemRNA_F-serratus_M_contig1014.232.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.450e-92
Identity = 178/358 (49.72%), Postives = 218/358 (60.89%), Query Frame = 3 
Query:    3 SLCRALVLLLTRPPRRSTSTTYVPASAGSLLEIIFDSDACPLASLPRPLARAAVDTLRREGFLRLTRMEALLESPILRSSRISRTGETKSTSAMENS---PSKDDVTE-------GFDFRAADSAFRRSWSMVASGVDQYIPYSLEMNVEEDGESAG-TCPPDEGYDSNGEVYDWDNFDSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIWRPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRY----VVHWDVSAEGDGHVEPT--RDWMALYRGRHQAELATRGRCASKTSFPWMVCPFLGCVSYLKSEFAVKRHIQTHKPQRKAR 1025
            SL  AL LLLTRP R    ++ VP + G+LLEI+FDSD  PL+ +PRPLA AA+D L+  G L+L R + LL  P       SR GE  +    E S   P    VTE       G DF+ A  AFR SWS+ A+GVD  +P +        G+  G +              D D   +    G+ W RVPDEVTLRVFSFMTPKR+ RL+CV+RAWRELL V  +WRPFFEARWPL ++ S+ DL GVS  L+  A+      +  KRRRR+    VVHW  S +  G  +P   RDWMALYR RH+AE A RGR A+KT FPW+VCPFLGCVS LKSEFAVKRH++THK  R+ R
Sbjct:  347 SLSHALALLLTRPKRGGVCSSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLRLPWG-----SRRGEPNAAGRREESKLGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLL--AEGLGSARKNAKRRRRHGKIGVVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKR 697
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BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 6.170e-58
Identity = 129/282 (45.74%), Postives = 163/282 (57.80%), Query Frame = 3 
Query:    3 SLCRALVLLLTRPPRRSTSTTYVPASAGSLLEIIFDSDACPLASLPRPLARAAVDTLRREGFLRLTRMEALLESPILRSSRISRTGETKSTSAMENS---PSKDDVTE-------GFDFRAADSAFRRSWSMVASGVDQYIPYSLEMNVEEDGESAG-TCPPDEGYDSNGEVYDWDNFDSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIWRPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRY----VVHW 803
            SL  AL LLLTRP R    ++ VP +AG+LLEI+FDSDA PL+ +PRPLA AA+D L+  G ++L R + LL  P     R SR GE  +      S   P    VTE       G DFR A  AFR +WS+ A+GVD  +P +        G+  G +              D D   +    G+ W RVPDEVT+RV SFMTPKR+ RL+CV+RAWRELL V  +WRPFFEARWPL ++ S+ DL GVS  L+  A+      +K KRRRR+    VVHW
Sbjct:  281 SLSHALALLLTRPKRGGLCSSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRPP-----RGSRRGEPNAAGRRTKSKLGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLL--AEGLGSARKKAKRRRRHGKIGVVHW 555
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS3_ECTSI1.450e-9249.72F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JX00_9PHAE6.170e-5845.74F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1014contigF-serratus_M_contig1014:122011..123893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1308
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1014.232.1prot_F-serratus_M_contig1014.232.1Fucus serratus malepolypeptideF-serratus_M_contig1014 122243..123690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.758844-UTR-F-serratus_M_contig1014:122010..1222421622928814.758844-UTR-F-serratus_M_contig1014:122010..122242Fucus serratus maleUTRF-serratus_M_contig1014 122011..122242 -
1690962584.5039895-UTR-F-serratus_M_contig1014:122010..1222421690962584.5039895-UTR-F-serratus_M_contig1014:122010..122242Fucus serratus maleUTRF-serratus_M_contig1014 122011..122242 -
1622928814.8163662-UTR-F-serratus_M_contig1014:123690..1238931622928814.8163662-UTR-F-serratus_M_contig1014:123690..123893Fucus serratus maleUTRF-serratus_M_contig1014 123691..123893 -
1690962584.548546-UTR-F-serratus_M_contig1014:123690..1238931690962584.548546-UTR-F-serratus_M_contig1014:123690..123893Fucus serratus maleUTRF-serratus_M_contig1014 123691..123893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.77376-CDS-F-serratus_M_contig1014:122242..1223321622928814.77376-CDS-F-serratus_M_contig1014:122242..122332Fucus serratus maleCDSF-serratus_M_contig1014 122243..122332 -
1690962584.5209954-CDS-F-serratus_M_contig1014:122242..1223321690962584.5209954-CDS-F-serratus_M_contig1014:122242..122332Fucus serratus maleCDSF-serratus_M_contig1014 122243..122332 -
1622928814.7874022-CDS-F-serratus_M_contig1014:122657..1228251622928814.7874022-CDS-F-serratus_M_contig1014:122657..122825Fucus serratus maleCDSF-serratus_M_contig1014 122658..122825 -
1690962584.5319762-CDS-F-serratus_M_contig1014:122657..1228251690962584.5319762-CDS-F-serratus_M_contig1014:122657..122825Fucus serratus maleCDSF-serratus_M_contig1014 122658..122825 -
1622928814.8049183-CDS-F-serratus_M_contig1014:123075..1236901622928814.8049183-CDS-F-serratus_M_contig1014:123075..123690Fucus serratus maleCDSF-serratus_M_contig1014 123076..123690 -
1690962584.5405319-CDS-F-serratus_M_contig1014:123075..1236901690962584.5405319-CDS-F-serratus_M_contig1014:123075..123690Fucus serratus maleCDSF-serratus_M_contig1014 123076..123690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1014.232.1

>prot_F-serratus_M_contig1014.232.1 ID=prot_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=polypeptide|length=291bp
MEALLESPILRSSRISRTGETKSTSAMENSPSKDDVTEGFDFRAADSAFR
RSWSMVASGVDQYIPYSLEMNVEEDGESAGTCPPDEGYDSNGEVYDWDNF
DSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIW
RPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRYVVHW
DVSAEGDGHVEPTRDWMALYRGRHQAELATRGRCASKTSFPWMVCPFLGC
VSYLKSEFAVKRHIQTHKPQRKARRRVRVRRLSAKCAKEA*
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mRNA from alignment at F-serratus_M_contig1014:122011..123893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1014.232.1 ID=mRNA_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=mRNA|length=1883bp|location=Sequence derived from alignment at F-serratus_M_contig1014:122011..123893- (Fucus serratus male)
GGTCGCTGTGCCGCGCGCTTGTCCTGCTGCTGACTCGCCCCCCACGGAGG
AGCACAAGTACAACTTATGTTCCTGCCAGTGCTGGGAGCCTGCTGGAGAT
CATATTCGACAGCGATGCGTGCCCTTTGGCAAGTTTGCCAAGGCCACTAG
CGAGGGCAGCGGTCGATACGCTTCGAAGGGAAGGTTTTCTGCGGCTCACC
CGCATGGAAGCCCTGCTGGAGTCACCCATTTTACGATCGTCGAGAATATC
GCGGACGGGAGAGACAAAATCAACCAGCGCAATGGAAAACTCGCCGTCGA
AGGACGATGTTACCGAAGGCTTCGATTTCCGCGCGGCGGATTCCGCCTTC
CGGCGGAGTTGGTCGATGGTAGCGTCTGGGGTGGATCAATACATCCCCTA
CTCGTTGGAGATGAACGTAGAAGAGGACGGCGAAAGCGCGGGTACATGCC
CTCCCGACGAGGGTTACGATTCGAATGGCGAGGTATACGATTGGGACAAC
TTTGATTCATCCCCCTGCGTAGGCGACCGCTGGACACGGGTGCCAGATGA
AGTCACCCTTCGCGTGTTCTCCTTCATGACACCGAAGCGGTTGTCCCGCC
TATCTTGCGTGAATCGCGCTTGGCGGGAGCTGCTCGGGGTCGTTTCTATA
TGGAGACCCTTTTTTGAAGCTCGCTGGCCGCTCAAGAGTCTCAAGAGCGA
GGCGGACCTTACAGGGGTGTCGAAAATGCTCGTCGAGGCGGCAGATCGTA
CGAGAGGCGGAGAGCGCAAGTACAAAAGAAGGAGACGCTACGTGGTACAT
TGGGACGTTTCGGCGGAGGTGTGTGGCTATTCTTGCTTTGGCGGTGACGA
TAACAATAGTCCTTTTTCAAGGAAGCGTTGCAAAAATCTCCGCGCCTGCG
TTCTGCTGGCATTAGGTCAGATCGTGTAATGACGCGTCTTAGAGGGAACT
CAAATGATTAAATACACTACCCGAACCTAAGTGCGATGTTCACGAAAAGG
AAGGTTATAGAGCTTTTTTGTTCACTAAGAAACAAGCAAAAACGACGGTA
AAACGATGGACTTGGCAGGGGGACGGCCACGTGGAGCCAACACGAGACTG
GATGGCACTCTACCGAGGTCGACATCAAGCAGAACTGGCAACTAGGGGGA
GGTGCGCCTCCAAGACGAGCTTTCCATGGATGGTGTGCCCTTTTTTGGGA
TGTGTGTCATATCTCAAGTCCGAATTTGCGGTTAAGGTGAGAGGGGATGC
GATGCGTTCATCCCTTGAGGAATCTCGAGATCATCGAGGGTCTGCGGCAT
AAGGAATCTTTCGATAACTTTGCGCTATTAGCTCTAGTAATAGGAAACTT
TTATTTTGATGTTGTACTTCCGAGTTGAGCACTTAATGCAGCAATAAAAG
CCGTTCATTGACTTGGAGAGGGGTTCCGTCTTTGTAGCGCCGCCATATAA
CGCGCCTGCGAGGGAGGTTGTATGATCTTGTTCGAAGCTTCAACGCGTAT
ATTTCCGTTGGCTGATATCCTCTGTTTTGTCCCGTCGACTCCCGTTAATG
GACGCCTACAGAGACACATCCAAACCCATAAGCCACAGCGGAAGGCGCGA
CGGCGTGTCCGTGTAAGGAGGTTGTCGGCGAAGTGTGCGAAAGAAGCGTG
AGAAGATCGCCTTGATGGTGCTGAATGGTTTTTGAGCCTTTATTAATGTA
GGACAGCATGGACGGAAGTATGGCTATCCATAGATAAGTGTATTCTTGCA
GCGTCAGACTAGGCGAACCTGGGGTTTGTGCTGTCGTTTAGAGCCTCGTG
AAATCATGTTGACCAAGCAAAAATTTACCATGGAGTTATGGTGCCAACCA
CCAATATTCTCTCATCCCGTGCGGGAGACGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1014:122011..123893-

>mRNA_F-serratus_M_contig1014.232.1 ID=mRNA_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=CDS|length=1746bp|location=Sequence derived from alignment at F-serratus_M_contig1014:122011..123893- (Fucus serratus male)
ATGGAAGCCCTGCTGGAGTCACCCATTTTACGATCGTCGAGAATATCGCG
GACGGGAGAGACAAAATCAACCAGCGCAATGGAAAACTCGCCGTCGAAGG
ACGATGTTACCGAAGGCTTCGATTTCCGCGCGGCGGATTCCGCCTTCCGG
CGGAGTTGGTCGATGGTAGCGTCTGGGGTGGATCAATACATCCCCTACTC
GTTGGAGATGAACGTAGAAGAGGACGGCGAAAGCGCGGGTACATGCCCTC
CCGACGAGGGTTACGATTCGAATGGCGAGGTATACGATTGGGACAACTTT
GATTCATCCCCCTGCGTAGGCGACCGCTGGACACGGGTGCCAGATGAAGT
CACCCTTCGCGTGTTCTCCTTCATGACACCGAAGCGGTTGTCCCGCCTAT
CTTGCGTGAATCGCGCTTGGCGGGAGCTGCTCGGGGTCGTTTCTATATGG
AGACCCTTTTTTGAAGCTCGCTGGCCGCTCAAGAGTCTCAAGAGCGAGGC
GGACCTTACAGGGGTGTCGAAAATGCTCGTCGAGGCGGCAGATCGTACGA
GAGGCGGAGAGCGCAAGTACAAAAGAAGGAGACGCTACGTGGTACATTGG
GACGTTTCGGCGGAGATGGAAGCCCTGCTGGAGTCACCCATTTTACGATC
GTCGAGAATATCGCGGACGGGAGAGACAAAATCAACCAGCGCAATGGAAA
ACTCGCCGTCGAAGGACGATGTTACCGAAGGCTTCGATTTCCGCGCGGCG
GATTCCGCCTTCCGGCGGAGTTGGTCGATGGTAGCGTCTGGGGTGGATCA
ATACATCCCCTACTCGTTGGAGATGAACGTAGAAGAGGACGGCGAAAGCG
CGGGTACATGCCCTCCCGACGAGGGTTACGATTCGAATGGCGAGGTATAC
GATTGGGACAACTTTGATTCATCCCCCTGCGTAGGCGACCGCTGGACACG
GGTGCCAGATGAAGTCACCCTTCGCGTGTTCTCCTTCATGACACCGAAGC
GGTTGTCCCGCCTATCTTGCGTGAATCGCGCTTGGCGGGAGCTGCTCGGG
GTCGTTTCTATATGGAGACCCTTTTTTGAAGCTCGCTGGCCGCTCAAGAG
TCTCAAGAGCGAGGCGGACCTTACAGGGGTGTCGAAAATGCTCGTCGAGG
CGGCAGATCGTACGAGAGGCGGAGAGCGCAAGTACAAAAGAAGGAGACGC
TACGTGGTACATTGGGACGTTTCGGCGGAGGGGGACGGCCACGTGGAGCC
AACACGAGACTGGATGGCACTCTACCGAGGTCGACATCAAGCAGAACTGG
CAACTAGGGGGAGGTGCGCCTCCAAGACGAGCTTTCCATGGATGGTGTGC
CCTTTTTTGGGATGTGTGTCATATCTCAAGTCCGAATTTGCGGTTAAGGG
GGACGGCCACGTGGAGCCAACACGAGACTGGATGGCACTCTACCGAGGTC
GACATCAAGCAGAACTGGCAACTAGGGGGAGGTGCGCCTCCAAGACGAGC
TTTCCATGGATGGTGTGCCCTTTTTTGGGATGTGTGTCATATCTCAAGTC
CGAATTTGCGGTTAAGAGACACATCCAAACCCATAAGCCACAGCGGAAGG
CGCGACGGCGTGTCCGTGTAAGGAGGTTGTCGGCGAAGTGTGCGAAAGAA
GCGTGAAGACACATCCAAACCCATAAGCCACAGCGGAAGGCGCGACGGCG
TGTCCGTGTAAGGAGGTTGTCGGCGAAGTGTGCGAAAGAAGCGTGA
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