mRNA_F-serratus_M_contig131.2323.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: D8LMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD9_ECTSI) HSP 1 Score: 257 bits (656), Expect = 7.240e-85 Identity = 119/179 (66.48%), Postives = 149/179 (83.24%), Query Frame = 1
Query: 10 LDKSPVITKSISSGLIGMMGDVVAQTIEWGFGDSSAPWSDRHMIWRSCAVMIDGLIVNGPLLHYAYDILERCMPAGESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSHVQ 546
LD PV+TKSISSG IG++GDV+AQ +E+ FG + PW M+WRSCAVMIDGL++NGPLLHYAY++LE MPAG+S+L A+ QVCV DV VIDPVFAF+FVWSTGL+EG SV +IL T+ ++ ++V+WL+VIG+ WAP+QIYLFNRYPVQ+RVL AD IDLVWTCV+S FSHV+
Sbjct: 10 LDAYPVLTKSISSGFIGLLGDVLAQWVEYLFGAAFPPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCV--DVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWAPIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSHVK 186
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: D8LMD8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD8_ECTSI) HSP 1 Score: 170 bits (430), Expect = 2.530e-49 Identity = 83/178 (46.63%), Postives = 123/178 (69.10%), Query Frame = 1
Query: 4 DSLDKSPVITKSISSGLIGMMGDVVAQTIEWGF--GDSSAPWSDRHMIWRSCAVMIDGLIVNGPLLHYAYDILERCMPAGESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSF 531
+ L+K P+I K +S L+G +GDV++Q + W G ++A W D + + +S AV IDG V+ PLLH AY L+R +PA ES A+ QV V DV V+DP+F LF+ +TGL+EG S +I+ T+ +++++V WLVVIGL APLQ+Y FNR+PV++RVL++D +D++WT V F
Sbjct: 87 EELEKRPLIWKCATSALVGALGDVISQGVYWAIRGGRANAVWHDTNAVRQSLAVAIDGFCVSAPLLHLAYGALDRWLPAEESKAYALAQVLV--DVLVLDPIFGLLFMVTTGLLEGRSFSQEIIRTIEDDYVTLVFWLVVIGLALAPLQVYTFNRFPVKWRVLISDGMDVLWTFVACF 262
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: A0A6H5JK43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK43_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.360e-25 Identity = 67/180 (37.22%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 10 LDKSPVITKSISSGLIGMMGDVVAQTIEWGF-GDSSAPWSDRHMIWRSCAVMIDGLIVNGPLLHYAYDILERCMP--AGESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSH 540
L +SP++ K+++SG++G+ GD+ AQ E+ +S R AV ID +++ GP LH Y +LE +P AG V A+ V ID FV DP+F F TG++E S+ IL LR F V ++ L + PLQ F P++FRVL + D+ WT V S+FSH
Sbjct: 193 LRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNTRRLTAVAIDSILITGPALHALYGLLECLIPTAAGGFVPAALHVV---IDTFVFDPMFVASFFCVTGMLESRSLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 369
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: A0A1Z5JHC7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHC7_FISSO) HSP 1 Score: 108 bits (270), Expect = 2.130e-25 Identity = 65/192 (33.85%), Postives = 102/192 (53.12%), Query Frame = 1
Query: 10 LDKSPVITKSISSGLIGMMGDVVAQTIEWGFGDSSAPWSDRHMIW---RSCAVMIDGLIVNGPLLHYAYDILERCMPAGESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSV-------EHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSHVQRAR 555
L P++TKSI+S ++G +GD VAQ W + H I+ R A M++GL+ +GPL+H AY + E +P G ++ A++ V +D ++D VF W TGL+EG S + DI TL+ ++L+ + L P+++ F PV +RVL + +D+VW V SF SH R +
Sbjct: 94 LTTQPLLTKSITSAVMGCVGDAVAQ--RW----------EHHPIYSKRRGLAAMVEGLLWSGPLMHRAYSLFEHILPVGNNMGFALIHVL--LDSLLLDSVFVTSAFWITGLLEGFSFKQLRQQYQRDIGGTLKASWLTSLFLL--------PVEVVCFRYLPVTYRVLAVNVLDIVWDTVISFMSHKTRGK 263
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: D8LRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI6_ECTSI) HSP 1 Score: 110 bits (274), Expect = 2.370e-25 Identity = 65/181 (35.91%), Postives = 97/181 (53.59%), Query Frame = 1
Query: 10 LDKSPVITKSISSGLIGMMGDVVAQTIEWGFGDSSA---PWSDRHMIWRSCAVMIDGLIVNGPLLHYAYDILERCMPA-GESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSH 540
L +SP++ K+++SG++G+ GD+ AQ E+ S P+ + R AV ID +++ GP LH Y +LE +P G + A + V ID FV DP+F F TG++E + IL LR F V ++ L + PLQ F P++FRVL + D+ WT V S+FSH
Sbjct: 193 LRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRGPFLKNNR--RLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVV--IDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSH 369
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: D7G2D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D0_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 4.040e-23 Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 139 IWRSCAVMIDGLIVNGPLLHYAYDILERCMPAGESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSF 531
+W + AV I P LH YD LE+ +PA +S A+ QV ID V++ F+ G +EG + E DI+ T++ ++L++V+WL+V + P Q+YLF +P+++RVL+AD L+W + F
Sbjct: 4 VWETWAVAIYCFFFVAPFLHVVYDALEKWIPADKSQANAIAQVT--IDSLVVETFLGLTFIVMVGFLEGETWEEDIVPTIKSDYLTLVVWLMVTNMVMGPAQVYLFVHFPLKWRVLIADGKGLLWNFIACF 132
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: A0A7S3DNH3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNH3_9STRA) HSP 1 Score: 103 bits (258), Expect = 9.100e-23 Identity = 66/199 (33.17%), Postives = 102/199 (51.26%), Query Frame = 1
Query: 10 LDKSPVITKSISSGLIGMMGDVVAQTIE-WGFGDSSAPWSDRHM------IWRSCAVMIDGLIVNGPLLHYAYDILERCMPAGESVL-----GAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEH-------DILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSHVQR 549
L + P++TKS+++GL+G GD VAQ +E W P RH R ++++DGL+++GPL+H+AY+ +E P + + V D V+D +F +W+TGL+EG SV D + TL+ + +LV+ PL++ F PV FRVL +FIDL+W V S +H R
Sbjct: 177 LQRHPLVTKSVTAGLLGWGGDSVAQRLEGW-----KQPPQGRHSRQGRYDARRGGSLLVDGLLLSGPLMHFAYEWMETWWPIPSATAYWWQGWGIALTHVLADTLVLDSIFVASTLWTTGLLEGYSVRQCWWQFRQDYIPTLKAG--GVTSFLVL------PLELACFKCLPVSFRVLAVNFIDLIWDTVISHMAHKSR 362
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: A0A6H5L428_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L428_9PHAE) HSP 1 Score: 100 bits (250), Expect = 2.150e-21 Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 271 VGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQ 474
+G+DV VIDPVFAF+F+W TGL+EG SV+ +IL T+ ++ ++V+WLVVIG+ WAP+QIYLFNRYPVQ
Sbjct: 651 IGVDVLVIDPVFAFMFIWYTGLIEGRSVQGEILPTIVHHYPTLVLWLVVIGVGWAPVQIYLFNRYPVQ 718
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: A0A7S3LFT8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFT8_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.240e-18 Identity = 54/183 (29.51%), Postives = 98/183 (53.55%), Query Frame = 1
Query: 10 LDKSPVITKSISSGLIGMMGDVVAQTIEWGFGD--SSAPW-SDRHMIWRSCAVMIDGLIVNGPLLHYAYDILERCMPAGESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSHVQR 549
L +P++TK I++G+IG +GD +AQ++E ++AP ++ R + ++ G ++GPL+H+AYD+ +R +P + GA + + +F +D +F TG +EG ++ LR ++L + + P++ F P+ +RVL +FIDL+W V SF +H R
Sbjct: 183 LSVNPLVTKGITAGVIGSLGDFLAQSLENFLHQRKNNAPVVHSKYDPRRGLSTLLYGFFISGPLMHFAYDLFDRVLPIHGN--GAALVHVLADSIF-LDAIFVAATYIVTGRMEGYKFRQ-VMPQLRKDYLPTLKASWATSIFLMPVEFVCFRFLPLNYRVLAVNFIDLIWDGVISFMAHRSR 361
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Match: A0A448Z075_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z075_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.420e-17 Identity = 55/211 (26.07%), Postives = 103/211 (48.82%), Query Frame = 1
Query: 4 DSLDKSPVITKSISSGLIGMMGDVVAQTIEW------------GFGD------------SSAPWSDRHMIWRSCAVMIDGLIVNGPLLHYAYDILERCMPA---GESVLGAVMQVCVGIDVFVIDPVFAFLFVWSTGLVEGLSVEHDILHTLRCNFLSMVMWLVVIGLCWAPLQIYLFNRYPVQFRVLVADFIDLVWTCVTSFFSHVQRAR 555
D L SP+ TK++++ ++ + GD +AQ IE GFG S W + R +++ + ++++GPLLH++Y+ +E+ +P G+S A + + ID F++D +F + +TG+ EG +I+ + +F + + G+C P+Q +F P+ RVL + ID+ W S+ H +R +
Sbjct: 154 DLLACSPLWTKTVTTSVLAVAGDSIAQYIETHKFSPSVVEGDEGFGKTKDVAVSAFSVGSPFSWLKDYDRRRGISILGENMLISGPLLHFSYNFMEQLIPTNGGGKSAFLAALSHSL-IDNFILDTIFLAIMFVTTGIAEG--YVQEIIPQFKKDFFPTLRTGWIAGICLLPVQFLIFRFLPLSLRVLGVNIIDMFWGAYVSYMVHRRRQK 361 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig131.2323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig131.2323.1 >prot_F-serratus_M_contig131.2323.1 ID=prot_F-serratus_M_contig131.2323.1|Name=mRNA_F-serratus_M_contig131.2323.1|organism=Fucus serratus male|type=polypeptide|length=186bp SDSLDKSPVITKSISSGLIGMMGDVVAQTIEWGFGDSSAPWSDRHMIWRSback to top mRNA from alignment at F-serratus_M_contig131:443823..449278+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig131.2323.1 ID=mRNA_F-serratus_M_contig131.2323.1|Name=mRNA_F-serratus_M_contig131.2323.1|organism=Fucus serratus male|type=mRNA|length=5456bp|location=Sequence derived from alignment at F-serratus_M_contig131:443823..449278+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig131:443823..449278+ >mRNA_F-serratus_M_contig131.2323.1 ID=mRNA_F-serratus_M_contig131.2323.1|Name=mRNA_F-serratus_M_contig131.2323.1|organism=Fucus serratus male|type=CDS|length=1116bp|location=Sequence derived from alignment at F-serratus_M_contig131:443823..449278+ (Fucus serratus male)back to top |