mRNA_F-serratus_M_contig1303.2282.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1303.2282.1
Unique NamemRNA_F-serratus_M_contig1303.2282.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: D7FVA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA2_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 4.260e-55
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 1
Query:    1 FQTPRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLFYSAQE 327
            FQTPRVNGAVL QFLG TVC+VGKV+S QEG  +A+LETSDG +ITV + AGSTWTSQYVEVIGHLHE   LQEFKSTDFGD FD+  YD AV+LMTGKFSYLFY+ QE
Sbjct:    4 FQTPRVNGAVLSQFLGNTVCVVGKVLSYQEGDSEAQLETSDGAKITVQMTAGSTWTSQYVEVIGHLHEPDRLQEFKSTDFGDMFDLRKYDEAVSLMTGKFSYLFYNPQE 112          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A7S2UTE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTE4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.680e-28
Identity = 45/104 (43.27%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    7 TPRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLFYS 318
            TPR+NG++ + F+G+ VCLVGKV+  QE +  A +++SDG  + V +A GS++ + +VE++G +  D +++EFKS D+G++FD+ LY++ + L  GK+  LFYS
Sbjct:   11 TPRINGSLRQNFVGRPVCLVGKVLDVQENSGSAVIQSSDGSSVQVVMAPGSSYLTSFVEIVGEVLPDLSIKEFKSIDYGENFDLDLYNQVLQLANGKYQKLFYS 114          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A024UW39_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UW39_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.730e-22
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN A+L QF+G TV LVG + S       A L+TSD   +TV    G+ ++S+YVEVIG +  D +L+EFK T FGD FD+  YD+ V L+ GK+S LF
Sbjct:    8 PRVNKAILAQFVGHTVSLVGSIESWT--GSQAVLKTSDNGFVTVHPQPGADYSSKYVEVIGSVQPDGSLKEFKCTSFGDDFDLKNYDKLVQLIHGKYSTLF 106          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A485KWY3_9STRA (Aste57867_12966 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWY3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.640e-22
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN AV+ Q++G+TV LVG + S       A ++TSDG  +TV    G+ +TS++VEVIG +  D +LQE+K T FGD FD+  YD+ V L+ GKF+ +F
Sbjct:    8 PRVNKAVMAQYIGRTVALVGSLESWTGSM--AVIKTSDGALVTVHPQPGADYTSKFVEVIGLVKPDGSLQEYKCTSFGDDFDLKNYDKLVHLIHGKFATMF 106          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A067CY70_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CY70_SAPPC)

HSP 1 Score: 90.9 bits (224), Expect = 1.560e-21
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN A++  ++ +TV LVG + S    +  A ++ SDG  +TV  A G+ ++S+++EVIG +  D +LQEFK T FGD+FD+G YD+ V LM GKF+ +F
Sbjct:    8 PRVNKALMASYVNRTVALVGSMESWTGNS--AIIKASDGGLVTVIPAPGADYSSKFIEVIGLVQPDGSLQEFKCTSFGDNFDLGNYDKLVTLMHGKFAPMF 106          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A6G0XXL0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXL0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.140e-21
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN A++ QF+G+TV LVG + S       A ++TSDG  +TV    G+ ++S++VEVIG +  D +L+E+K T FGD FD+  YD+ V L+ GKFS LF
Sbjct:    8 PRVNKAIMAQFVGRTVALVGSLESWTGSM--AVVKTSDGGLVTVHPQPGADYSSKFVEVIGLVQPDGSLKEYKCTSFGDDFDLKNYDKLVHLIHGKFSSLF 106          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A1W0ABE2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABE2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.310e-21
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN A +  ++ +TV LVG + S      +A +++SDG  +TV  + G+ ++S+YVEVIG +  D ++QEFK T FGD FDM  YD+ V L+ GKF+ +F
Sbjct:    8 PRVNKATMVNYINRTVALVGSMESWT--GSNAVIKSSDGGLVTVHPSPGADYSSKYVEVIGQVQHDGSIQEFKCTSFGDDFDMANYDKLVMLIHGKFAPMF 106          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A1V9ZKF2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKF2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.550e-20
Identity = 44/101 (43.56%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN A++  ++ +TV LVG + S    +  A ++ SDG  +T+  + G+ ++S++VEVIG +  D +LQEFK T +GD FD+  YD+ VALM GKF+ +F
Sbjct:    8 PRVNKALMAGYINRTVALVGSMESWTGNS--AVVKASDGGLVTIHPSPGADYSSKFVEVIGQVQPDGSLQEFKCTSYGDDFDLANYDKLVALMHGKFAPMF 106          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A8K1C3J4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3J4_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 8.090e-20
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   10 PRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            PRVN   +  F+G+TV +VG V S    A    L TSDG  + V    GS ++S++VEVIG + +++TLQEFK+T FGD+FD+  YD+ V +   KF +LF
Sbjct:   12 PRVNKKTMGSFVGRTVAIVGAVESHMPTA--VVLRTSDGGMVNVNPMPGSDYSSKFVEVIGRVVDNNTLQEFKTTLFGDNFDLETYDQFVQVAQSKFRHLF 110          
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Match: A0A484EA13_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EA13_BRELC)

HSP 1 Score: 84.3 bits (207), Expect = 6.370e-19
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    7 TPRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAE-LETSDGVRITVTLAAGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKFSYLF 312
            +PRVN   +  ++G TV +VG V   ++ +P A  L TSDG  + VT   GS + S+ VEVIG + +  TLQEFK+T FGD+FD+ +YD+ V L   K+ YLF
Sbjct:   10 SPRVNKTTMGGYVGHTVAVVGTV---EKHSPTAVVLRTSDGGIVNVTPQPGSDYGSKVVEVIGRVVDSETLQEFKTTLFGDNFDLDVYDQFVQLSHSKYKYLF 109          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1303.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA2_ECTSI4.260e-5577.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UTE4_9STRA5.680e-2843.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024UW39_9STRA2.730e-2249.50Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A485KWY3_9STRA5.640e-2247.52Aste57867_12966 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CY70_SAPPC1.560e-2145.54Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0XXL0_9STRA3.140e-2147.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1W0ABE2_9STRA6.310e-2144.55Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZKF2_9STRA2.550e-2043.56Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K1C3J4_PYTOL8.090e-2045.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EA13_BRELC6.370e-1945.63Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1303contigF-serratus_M_contig1303:10097..11922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue9.5e-42
Seed eggNOG ortholog2880.D7FVA2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Replication factor A protein 3
EggNOG OGs2C2US@1,2S5GF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size330
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1303.2282.1prot_F-serratus_M_contig1303.2282.1Fucus serratus malepolypeptideF-serratus_M_contig1303 10097..11922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929261.0770948-CDS-F-serratus_M_contig1303:10096..102161622929261.0770948-CDS-F-serratus_M_contig1303:10096..10216Fucus serratus maleCDSF-serratus_M_contig1303 10097..10216 +
1690962773.3077672-CDS-F-serratus_M_contig1303:10096..102161690962773.3077672-CDS-F-serratus_M_contig1303:10096..10216Fucus serratus maleCDSF-serratus_M_contig1303 10097..10216 +
1622929261.0945747-CDS-F-serratus_M_contig1303:10581..106311622929261.0945747-CDS-F-serratus_M_contig1303:10581..10631Fucus serratus maleCDSF-serratus_M_contig1303 10582..10631 +
1690962773.318509-CDS-F-serratus_M_contig1303:10581..106311690962773.318509-CDS-F-serratus_M_contig1303:10581..10631Fucus serratus maleCDSF-serratus_M_contig1303 10582..10631 +
1622929261.1150343-CDS-F-serratus_M_contig1303:10932..110151622929261.1150343-CDS-F-serratus_M_contig1303:10932..11015Fucus serratus maleCDSF-serratus_M_contig1303 10933..11015 +
1690962773.3285718-CDS-F-serratus_M_contig1303:10932..110151690962773.3285718-CDS-F-serratus_M_contig1303:10932..11015Fucus serratus maleCDSF-serratus_M_contig1303 10933..11015 +
1622929261.1311538-CDS-F-serratus_M_contig1303:11845..119221622929261.1311538-CDS-F-serratus_M_contig1303:11845..11922Fucus serratus maleCDSF-serratus_M_contig1303 11846..11922 +
1690962773.3473184-CDS-F-serratus_M_contig1303:11845..119221690962773.3473184-CDS-F-serratus_M_contig1303:11845..11922Fucus serratus maleCDSF-serratus_M_contig1303 11846..11922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1303.2282.1

>prot_F-serratus_M_contig1303.2282.1 ID=prot_F-serratus_M_contig1303.2282.1|Name=mRNA_F-serratus_M_contig1303.2282.1|organism=Fucus serratus male|type=polypeptide|length=110bp
FQTPRVNGAVLEQFLGQTVCLVGKVISQQEGAPDAELETSDGVRITVTLA
AGSTWTSQYVEVIGHLHEDSTLQEFKSTDFGDSFDMGLYDRAVALMTGKF
SYLFYSAQE*
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mRNA from alignment at F-serratus_M_contig1303:10097..11922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1303.2282.1 ID=mRNA_F-serratus_M_contig1303.2282.1|Name=mRNA_F-serratus_M_contig1303.2282.1|organism=Fucus serratus male|type=mRNA|length=1826bp|location=Sequence derived from alignment at F-serratus_M_contig1303:10097..11922+ (Fucus serratus male)
TTTCAGACGCCTCGGGTGAACGGGGCCGTGCTTGAGCAGTTCTTGGGGCA AACGGTCTGCCTTGTTGGCAAAGTTATCTCGCAACAGGAGGGGGCCCCCG ACGCCGAGCTGGAGACGTCGGTAATACTTGACTTTCATTCAAGCACATCA TACAGACGTTCGTTGCTACTGATACGATATGATATAGACTATTAATAGTC TAATATGATGTGATAAACCTTTCCTTATTACCGTGGAGGTCTAGAGGTCT GCCGTCTAAGGATATTTTTGGTGAGAGCCGACGCCCTCGCGGCACAAGGT ATAGCCTACAAGTTGTACTATTTAATAGTTTTAGTCTAATACAGTATGGT ACGTGCTTTACGCGGTTGTGCGACTGAATCGGAGCGCACATTTCAAAACG TAACGATTGCATTTTTTAACGGTTGGTAGATCCTTTCTTTTGATGTTCGA TGCTTGACGTCCCGCGGCGTGGCATGGTATGGCAGGACGGAGTGCGCATC ACTGTTACGCTGGCGGCAGGGAGCACTTGGACAAGGTGAGTGAGTGAGTG ACATGTATGCCGTTGCTCTATCTATATTCTGATACGCCGATGGAGAAGTT TTCTGCCAAAGCGCACAACACGCGGTCATCGATTCCAAACGACGCGGCGG GTGAACGCCTGATGAATCCCTTGTCGAATCCACGATTCCGATTTTTTCAT CTTGAAGTGGAGCTATCTAGTCTATAATATCTAGTCTATACTATCTAGTC TATACTATCTAGTCTATACCCGCGGTGACGAGCATGTGTCATATCTCCTG TCTGTTTGTATCAATACCTTCTCTACTATACTACAGCCAGTACGTGGAGG TGATCGGCCACCTTCACGAGGATTCTACCTTACAAGAATTCAAGAGCACC GATTTCGGCGATTCCTTTGGTGAGATTCCTTTCCCCAGCAGGATGACGTC TAAACTATACCTATTACTATAGTGAACTATGTTCATGGCGAACATAAGAT ACAAAATATATTTTCTATATCCGAAAATGTTGCTCAACTGCGTAGACCAA TCATTTTTTATGGTGAGCGTTTTACAGTGTCAATGCTCACAGTATCCATA GTATTAGATAATACGATAACGCTTGGCTACGAGTACCTACATGCTGATAT ATAATATCCTGACTGTCTTCAGAATCCAATGATTACGATACCGTCGTCAT GGTCTTACTCTGACTCTGCATTAACAACGTAAGCCAGATCGAAAGCATTG GACCTGTCAGGGCGTTTCTATCGATATCAAATTGGCGGGAGCGTGTGACA GGCGTTTTTCCCTGTTGTATTTTGTTATTAATACAACTATTCTTCATGAT CATGTTGGTAATTAACACATACAACAGCATAACAGCATACCAGGTATGGT ATACCAGGTACTACATACTTTATAACATACAACACATCATCCAACTCGGG TAATATCGACGCCGTAAGTTCTAATTGTGGGAGACTCATGACAAGATCCT TCGAACCCACAGCTTACACTTTTGTATGCTTGCCAAGTAAGCGAACGAGG AAATCCGTTAACCATCGGCGAAGACCTGAGACCTGTTTTTGGTACGAAGT ACAAGTTATAAGAAGTTATATTGAAATTTGAAGGATATACGAGTGCAGGT ACCCACCTTGTCACTGTCACTTGCCGTGCTGATCTCATCTCATCCACTAT TCCTTTCAAGTGACCTATATTCCACGATTCGCGCTGCTGCCCGTCGCAGA TATGGGACTGTACGACAGAGCGGTCGCTCTCATGACGGGGAAGTTCAGCT ACCTCTTCTACTCGGCGCAGGAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1303:10097..11922+

>mRNA_F-serratus_M_contig1303.2282.1 ID=mRNA_F-serratus_M_contig1303.2282.1|Name=mRNA_F-serratus_M_contig1303.2282.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1303:10097..11922+ (Fucus serratus male)
TTTCAGACGCCTCGGGTGAACGGGGCCGTGCTTGAGCAGTTCTTGGGGCA
AACGGTCTGCCTTGTTGGCAAAGTTATCTCGCAACAGGAGGGGGCCCCCG
ACGCCGAGCTGGAGACGTCGTTTCAGACGCCTCGGGTGAACGGGGCCGTG
CTTGAGCAGTTCTTGGGGCAAACGGTCTGCCTTGTTGGCAAAGTTATCTC
GCAACAGGAGGGGGCCCCCGACGCCGAGCTGGAGACGTCGGACGGAGTGC
GCATCACTGTTACGCTGGCGGCAGGGAGCACTTGGACAAGGACGGAGTGC
GCATCACTGTTACGCTGGCGGCAGGGAGCACTTGGACAAGCCAGTACGTG
GAGGTGATCGGCCACCTTCACGAGGATTCTACCTTACAAGAATTCAAGAG
CACCGATTTCGGCGATTCCTTTGCCAGTACGTGGAGGTGATCGGCCACCT
TCACGAGGATTCTACCTTACAAGAATTCAAGAGCACCGATTTCGGCGATT
CCTTTGATATGGGACTGTACGACAGAGCGGTCGCTCTCATGACGGGGAAG
TTCAGCTACCTCTTCTACTCGGCGCAGGAGTAGATATGGGACTGTACGAC
AGAGCGGTCGCTCTCATGACGGGGAAGTTCAGCTACCTCTTCTACTCGGC
GCAGGAGTAG
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