mRNA_F-serratus_M_contig970.21042.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 132 bits (333), Expect = 7.530e-32 Identity = 65/202 (32.18%), Postives = 112/202 (55.45%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + +S P+ ASI+ ++ VA ++L H D +QA + A + + C+ P+ + + G V + + +YGL GR W + + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF ++ +G+ +Y GC I + + KL Q Y+ES++K+ Sbjct: 41 GLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVA-DEGEREELFASLNKKFPVESLGEYTWYDGCAIAMDVENGITKLSQTAYIESMLKR 241
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.590e-31 Identity = 68/202 (33.66%), Postives = 112/202 (55.45%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+G+ +Y GC I + + KL Q Y+ES++K+ Sbjct: 559 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKR 759
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.150e-31 Identity = 67/202 (33.17%), Postives = 112/202 (55.45%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDI+ A D+ + + KF +KD+G+ +Y GC I + + KL Q Y+ES++K+ Sbjct: 272 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV-AADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKR 472
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.430e-31 Identity = 66/191 (34.55%), Postives = 106/191 (55.50%), Query Frame = 1 Query: 37 AQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+G+ +Y GC I + + KL Q Y+ES++K+ Sbjct: 3 ARGFSQIPGIDFRHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKR 192
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 132 bits (331), Expect = 7.300e-31 Identity = 67/202 (33.17%), Postives = 111/202 (54.95%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+G+ +Y GC I + + KL Q Y+E ++K+ Sbjct: 418 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEGMLKR 618
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE) HSP 1 Score: 126 bits (317), Expect = 8.020e-31 Identity = 65/197 (32.99%), Postives = 109/197 (55.33%), Query Frame = 1 Query: 19 YQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 ++ R+ A+G Q+ + + S P+ ASI+ ++ VA+ K ++L H D +QA + A + + + + P+ G V + + +YGL G W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + F + KF +KD+G+ +Y G I + + +L Q Y+ESI+K+ Sbjct: 43 FKARMVARGFSQIPSIDFHHSSSACPSAASIKTVITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREEFFASLNKKFPVKDLGECTWYDGYAIAMDIENDITRLSQTAYIESILKR 238
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 3.400e-30 Identity = 67/202 (33.17%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ A K ++L H D +QA + A + + + + P+ G V + +YGL GR W + D + G+ Q DPCVFRKVVDGE ++V+ VDDIL A D+ + KF +KD+G+ +Y GC I + + KL Q Y+ES++K+ Sbjct: 167 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVEHALYGLKQSGREWGFEAADALIENGYEQCGVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASPNKKFPMKDLGECTWYDGCAIAMHVEYGITKLSQTAYIESMLKR 367
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5K2N9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N9_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.850e-30 Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + + P+ G V + + +YG G W + D + G+ Q + DPCVFRKVVDGE ++V+ VD IL A D+ + + KF +KD+G +Y GC I + + KL Q Y+ES++K+ Sbjct: 166 GLIVDFKARMVARGFLQIPGIDFHHSSSACPSAASIKTVIAVATEKSKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMFGKVVKVERALYGRNQSGHEWGFEAADALIGNGYGQCRVDPCVFRKVVDGEVVGLIVIYVDGILV-AADEGEREELFASLNKKFPVKDLGGCTWYDGCAIAMDVENGITKLSQTAYIESMLKR 366
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 127 bits (318), Expect = 4.340e-30 Identity = 65/202 (32.18%), Postives = 113/202 (55.94%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ AS++ ++ VA K ++L H D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPC+FRKVVDGE ++V+ VDDIL A + D FA+ + ++F +KD+G+ +Y GC I + + L Q +ES++K+ Sbjct: 75 GLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFAS-LNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKR 275
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 128 bits (321), Expect = 9.070e-30 Identity = 66/202 (32.67%), Postives = 112/202 (55.45%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + + +P+ G V + + +YGL GR W ++ D + G Q + DPCVFRKVVDGE ++V+ VD+IL A D+ + + KF +K MG+ ++ GC I + + KL Q Y+ES++K+ Sbjct: 342 GLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILV-AADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKR 542 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig970.21042.1 >prot_F-serratus_M_contig970.21042.1 ID=prot_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=polypeptide|length=103bp MTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATback to top mRNA from alignment at F-serratus_M_contig970:321282..322146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=mRNA|length=865bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig970:321282..322146+ >mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)back to top |