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Homology
BLAST of mRNA_F-serratus_M_contig97.21000.1 vs. uniprot
Match: D7G6B6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6B6_ECTSI) HSP 1 Score: 210 bits (535), Expect = 2.180e-64 Identity = 109/180 (60.56%), Postives = 130/180 (72.22%), Query Frame = 3
Query: 96 MADRRARRRTNSRKVHAEDGIQKAKPGEIADMLHMDMMAHRKKTADFNASWKRVLCFAALGLSGVSILKAIEKASEGDPGWMERCLTSANAGLIAAWVALVDLVNHRARSTSLFVKLTVFALSLYQLVAWWNSREGGGQPDFPVAVILFIVAVXXXXSMESTLETAEKAFRASGSLANKV 635
M D RRRT KV EDGIQ+ +PGEIA +LHMDM AH+KKTADFN WKR L FA++GL+ VS+LKA+EKA EGD GW+ER LTSANAGLI WV+ VDL +A + L+ K+ FA+SLYQLV+WW SR+ DFPVAVIL IV V SM+S L A+ AFRAS +LA KV
Sbjct: 1 MRDGNPRRRTARTKVQTEDGIQRPRPGEIAHLLHMDMAAHQKKTADFNNGWKRALLFASIGLAAVSLLKAVEKAREGDLGWLERGLTSANAGLIGFWVSQVDLQTDKA--SLLYCKIAAFAVSLYQLVSWWTSRQSEIHVDFPVAVILLIVVVASVASMKSALNEADNAFRASEALAEKV 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 984 |
Cds size | 561 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932744.7810824-UTR-F-serratus_M_contig97:15690..15785 | 1622932744.7810824-UTR-F-serratus_M_contig97:15690..15785 | Fucus serratus male | UTR | F-serratus_M_contig97 15691..15785 + |
1690964452.6933277-UTR-F-serratus_M_contig97:15690..15785 | 1690964452.6933277-UTR-F-serratus_M_contig97:15690..15785 | Fucus serratus male | UTR | F-serratus_M_contig97 15691..15785 + |
1622932744.862945-UTR-F-serratus_M_contig97:17729..18057 | 1622932744.862945-UTR-F-serratus_M_contig97:17729..18057 | Fucus serratus male | UTR | F-serratus_M_contig97 17730..18057 + |
1690964452.7494595-UTR-F-serratus_M_contig97:17729..18057 | 1690964452.7494595-UTR-F-serratus_M_contig97:17729..18057 | Fucus serratus male | UTR | F-serratus_M_contig97 17730..18057 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932744.8018064-CDS-F-serratus_M_contig97:15785..15839 | 1622932744.8018064-CDS-F-serratus_M_contig97:15785..15839 | Fucus serratus male | CDS | F-serratus_M_contig97 15786..15839 + |
1690964452.7154675-CDS-F-serratus_M_contig97:15785..15839 | 1690964452.7154675-CDS-F-serratus_M_contig97:15785..15839 | Fucus serratus male | CDS | F-serratus_M_contig97 15786..15839 + |
1622932744.8213482-CDS-F-serratus_M_contig97:17031..17133 | 1622932744.8213482-CDS-F-serratus_M_contig97:17031..17133 | Fucus serratus male | CDS | F-serratus_M_contig97 17032..17133 + |
1690964452.7266908-CDS-F-serratus_M_contig97:17031..17133 | 1690964452.7266908-CDS-F-serratus_M_contig97:17031..17133 | Fucus serratus male | CDS | F-serratus_M_contig97 17032..17133 + |
1622932744.8410532-CDS-F-serratus_M_contig97:17324..17729 | 1622932744.8410532-CDS-F-serratus_M_contig97:17324..17729 | Fucus serratus male | CDS | F-serratus_M_contig97 17325..17729 + |
1690964452.7376413-CDS-F-serratus_M_contig97:17324..17729 | 1690964452.7376413-CDS-F-serratus_M_contig97:17324..17729 | Fucus serratus male | CDS | F-serratus_M_contig97 17325..17729 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig97.21000.1 >prot_F-serratus_M_contig97.21000.1 ID=prot_F-serratus_M_contig97.21000.1|Name=mRNA_F-serratus_M_contig97.21000.1|organism=Fucus serratus male|type=polypeptide|length=187bp
MADRRARRRTNSRKVHAEDGIQKAKPGEIADMLHMDMMAHRKKTADFNAS WKRVLCFAALGLSGVSILKAIEKASEGDPGWMERCLTSANAGLIAAWVAL VDLVNHRARSTSLFVKLTVFALSLYQLVAWWNSREGGGQPDFPVAVILFI VAVVAIASMESTLETAEKAFRASGSLANKVGQGSRR* back to topmRNA from alignment at F-serratus_M_contig97:15691..18057+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig97.21000.1 ID=mRNA_F-serratus_M_contig97.21000.1|Name=mRNA_F-serratus_M_contig97.21000.1|organism=Fucus serratus male|type=mRNA|length=2367bp|location=Sequence derived from alignment at F-serratus_M_contig97:15691..18057+ (Fucus serratus male) CTTGGTCAACCATCAGCCAGAGGGCAAGAGTACCGGTATCCCGGAGAAAT
TTTGACCTATTTGCTGATCTAATAAGCTTTTGTGCTTGCTTCAGTATGGC
CGACAGAAGAGCTAGGCGTCGAACCAACTCAAGAAAAGTACACGCTGAGG
TGCGGTATAGTTGATTTATGTTATATTTATGACCACAGTTTGTACTGCTG
TGGTGGTACGTGGAGTATGTAGAAATGGCGCTTGCGTCTCTGATAATAAT
AGTTAGTTAGACTACATGTGTAGTGACTGCAGTAATTTCATGATGCTGCA
TGTAAGCTTGTCGGGGTTCGTCGTTCTCCGCTATTACGGTAATACAAGAC
ACAGGTTACTGTATTAAGTGGTTTGCAATACCTACATGTAAACCGTGTGG
ACGACCCTGCTCCGCACTGTACTGCTGTATACTCCATGTTGACCAGATTT
AGGACATAGATTCGACACAAAGCGGTACACCGGCTTGCCTCCTAATTGAA
GAAAACACTTCATGCGGGATATAGACCTGATGGCAGCACTGCTGTATCTT
AAAAAGTACCTCGTGGAACTATTTGTACTACAGTATATTGCACGTTCATC
CGCTGACCGGTACAAGTAGCCCTGGCTATGACTGGCTCTATTGTATAGCG
TTCATGATCAAATGATGGGTACCACGACGTGTCATTTTCCTCTTTGGGCG
CTCCAACTCTCCCCAACACCAGCTATATATGTATGTATGCATGTATAGAT
GGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCC
TACTCGTGGTCAGCTGAACAGGAAAAATAATATTCCCCTGTCCCCGTGCG
TGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCTTACCGTGCCGCGT
CAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACAGGA
TTTCTCCCGAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCA
TCGGGTCAGTCCCGAGTGTATCGGGTCACGCAATTGCGTACCGATGGCGT
TCACTACCGAGAGTCCGCCGGCACAGGGTCAGTAAACCTCAAGGAAGTTC
CGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATCCGCCT
CTCTTTCCACACCCACCATTGGTATGAAGTGGGCATGTTGAAAGTACCGG
CAAATGTACCTGCCGATGAGCCTCTGTCATGTGCCGTGGTATTCTTTTCC
TTTCATGATTTATTAATATCAATTCTACAGTATTAACTTTTGACGTGCTT
TCATGGCTTGACTTGTAATGATTAATGTTCCTAAAAAGCAGGATGGGATT
CAGAAAGCGAAGCCCGGGGAGATTGCAGACATGCTGCACATGGATATGAT
GGCTCATCGGAAGAAAACCGCCGACTTCAACGCCTCCTGGAAGGTACGCT
GACTTGACATATATTCAAGTTGTTGTATCTGGGATGGCCCATGTTTAGCT
ATGATAAGGCGTTGTAACTCTGTAGAGATGTAATCCCACTCTCTCTCAAC
AGTGTGTATCTGGGTGCAGTATGAACCCGATTTTGGCTCCGTCGCAAGAT
TCCCGTCAACCGCAATCTCGTTCTCTGGTTGCAGCGTGTGCTCTGCTTCG
CTGCCCTTGGGCTGTCGGGGGTGAGCATACTCAAGGCGATCGAGAAGGCG
AGCGAGGGGGATCCCGGCTGGATGGAGCGCTGCTTGACGTCAGCTAACGC
CGGCTTGATCGCCGCATGGGTGGCGCTGGTCGATCTGGTTAATCATCGAG
CACGGAGTACGTCTCTGTTTGTTAAATTGACTGTGTTCGCCTTGTCTCTC
TACCAGCTGGTGGCTTGGTGGAACAGTCGTGAGGGTGGAGGGCAACCAGA
CTTCCCGGTTGCGGTCATACTCTTTATTGTTGCCGTAGTCGCTATCGCCT
CCATGGAGTCCACTCTCGAGACTGCCGAGAAAGCGTTCCGAGCAAGCGGC
TCACTTGCTAACAAAGTAGGGCAAGGGAGTCGTCGGTAGAAATGTCATGC
GTGGGATCCTGCCCTGCCCTACCCCGCTCGGGTAAGGTCATTCGATATCG
TCTTCGGTCTCCTTGGGGTACCTGGTGGGCACAGCCGTTGTTAGGTGTAC
GTGTAACAACTTGTAGCTTCGCCCGTCCGTCTCATTTCTAGCTTCCATTT
CTGCCGTTTGGTAGTACCTGACCGCGTCGGGGGCGACGATCAAGCTGTAT
TTCACTTGTCGTTGTCCTGTAAATTGAACCAAGTAATTGAATCACTTATT
CGGTACAGTAGCCTGCGTAATAAGAGCTGGAACACCTAAATCTGGACATG
CAATTCAACATACCTCC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig97:15691..18057+ >mRNA_F-serratus_M_contig97.21000.1 ID=mRNA_F-serratus_M_contig97.21000.1|Name=mRNA_F-serratus_M_contig97.21000.1|organism=Fucus serratus male|type=CDS|length=1122bp|location=Sequence derived from alignment at F-serratus_M_contig97:15691..18057+ (Fucus serratus male) ATGGCCGACAGAAGAGCTAGGCGTCGAACCAACTCAAGAAAAGTACACGC TGAGATGGCCGACAGAAGAGCTAGGCGTCGAACCAACTCAAGAAAAGTAC ACGCTGAGGATGGGATTCAGAAAGCGAAGCCCGGGGAGATTGCAGACATG CTGCACATGGATATGATGGCTCATCGGAAGAAAACCGCCGACTTCAACGC CTCCTGGAAGGATGGGATTCAGAAAGCGAAGCCCGGGGAGATTGCAGACA TGCTGCACATGGATATGATGGCTCATCGGAAGAAAACCGCCGACTTCAAC GCCTCCTGGAAGCGTGTGCTCTGCTTCGCTGCCCTTGGGCTGTCGGGGGT GAGCATACTCAAGGCGATCGAGAAGGCGAGCGAGGGGGATCCCGGCTGGA TGGAGCGCTGCTTGACGTCAGCTAACGCCGGCTTGATCGCCGCATGGGTG GCGCTGGTCGATCTGGTTAATCATCGAGCACGGAGTACGTCTCTGTTTGT TAAATTGACTGTGTTCGCCTTGTCTCTCTACCAGCTGGTGGCTTGGTGGA ACAGTCGTGAGGGTGGAGGGCAACCAGACTTCCCGGTTGCGGTCATACTC TTTATTGTTGCCGTAGTCGCTATCGCCTCCATGGAGTCCACTCTCGAGAC TGCCGAGAAAGCGTTCCGAGCAAGCGGCTCACTTGCTAACAAAGTAGGGC AAGGGAGTCGTCGGTAGCGTGTGCTCTGCTTCGCTGCCCTTGGGCTGTCG GGGGTGAGCATACTCAAGGCGATCGAGAAGGCGAGCGAGGGGGATCCCGG CTGGATGGAGCGCTGCTTGACGTCAGCTAACGCCGGCTTGATCGCCGCAT GGGTGGCGCTGGTCGATCTGGTTAATCATCGAGCACGGAGTACGTCTCTG TTTGTTAAATTGACTGTGTTCGCCTTGTCTCTCTACCAGCTGGTGGCTTG GTGGAACAGTCGTGAGGGTGGAGGGCAACCAGACTTCCCGGTTGCGGTCA TACTCTTTATTGTTGCCGTAGTCGCTATCGCCTCCATGGAGTCCACTCTC GAGACTGCCGAGAAAGCGTTCCGAGCAAGCGGCTCACTTGCTAACAAAGT AGGGCAAGGGAGTCGTCGGTAG back to top
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