mRNA_F-serratus_M_contig964.20965.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 173 bits (438), Expect = 9.350e-51 Identity = 88/210 (41.90%), Postives = 130/210 (61.90%), Query Frame = 1 Query: 28 KIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 657 K ++GK++K+K LVA+GF Q+ V + SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++ IP + + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD MV+V++VDDIL D+ + A L +K K+ G+ E++ GC I R+ + K Q Y++SM+KRFDV Sbjct: 10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKISQTAYIDSMVKRFDV 218
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.940e-48 Identity = 89/219 (40.64%), Postives = 133/219 (60.73%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 657 + K + K +GKI K+K RLVA+GF ++ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEEI++ +P + +G+ +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDD+L D+ + A L +K K++G+ E++ C I R+ + LK Q Y+++M+KRFDV Sbjct: 207 VSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDV 424
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.130e-48 Identity = 88/220 (40.00%), Postives = 137/220 (62.27%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK 660 + +K + K ++GKI+ +K RLVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +K K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK Sbjct: 782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1000
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.330e-48 Identity = 88/220 (40.00%), Postives = 137/220 (62.27%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK 660 + +K + K ++GKI+ +K RLVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +K K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1379
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.360e-48 Identity = 88/220 (40.00%), Postives = 137/220 (62.27%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK 660 + +K + K ++GKI+ +K RLVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +K K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1399
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.390e-48 Identity = 88/220 (40.00%), Postives = 137/220 (62.27%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK 660 + +K + K ++GKI+ +K RLVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +K K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVK 1542
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 177 bits (449), Expect = 6.600e-48 Identity = 88/219 (40.18%), Postives = 136/219 (62.10%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 657 + +K + K ++GKI+ +K RLVA+GF Q+ V Y SP PS+ASI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +K K++ + +++ GC I R+ +T L+ Q Y++SM+KRFDV Sbjct: 336 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDV 553
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 176 bits (446), Expect = 7.530e-48 Identity = 90/219 (41.10%), Postives = 135/219 (61.64%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 657 IG+K ++ K + G I +K R+VA+GF Q+ G+ + S PSAASI+ ++A A K +L H+D +QA++ A + EEIY+ PE G V ++ +A+YGL Q+GR W + D + G+EQ + DPCVFRKVVDGE ++V++VDDI+ A D+ + A L +K +KD+G+ +Y GC I + + K Q Y+ESM+KRFDV Sbjct: 258 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV-AADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDV 475
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 177 bits (449), Expect = 1.590e-47 Identity = 90/216 (41.67%), Postives = 134/216 (62.04%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKR 648 +G K ++K K G DG IEKYK RLVA+GF QVEG+ YT+ ++P ASIR +LA AA+ D ++ D + AFL D+DEEIY+ P F G+V RL K++YGL QA R W K + +GFE++ AD +F KV +G +++ ++VDD+L D+ TID F + L ++ ++ D+G A + +G I R+R L Q Y+E +++R Sbjct: 1033 VGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILER 1247
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.780e-47 Identity = 91/219 (41.55%), Postives = 134/219 (61.19%), Query Frame = 1 Query: 1 IGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAVKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATIDRFAAELGQKLKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDV 657 IG+K ++ K + G I +K R+VA+GF Q+ G+ + S PSAASI+ ++A A K +L H+D +QA++ A + EEIY+ PE G V ++ +A+YGL Q GR W + D + G+EQ + DPCVFRKVVDGE ++V++VDDIL A D+ + A L +K +KD+G+ +Y GC I + + K Q Y+ESM+KRFDV Sbjct: 545 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDV 762 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig964.20965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig964.20965.1 >prot_F-serratus_M_contig964.20965.1 ID=prot_F-serratus_M_contig964.20965.1|Name=mRNA_F-serratus_M_contig964.20965.1|organism=Fucus serratus male|type=polypeptide|length=216bp MLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLback to top mRNA from alignment at F-serratus_M_contig964:206618..207277+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig964.20965.1 ID=mRNA_F-serratus_M_contig964.20965.1|Name=mRNA_F-serratus_M_contig964.20965.1|organism=Fucus serratus male|type=mRNA|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig964:206618..207277+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig964:206618..207277+ >mRNA_F-serratus_M_contig964.20965.1 ID=mRNA_F-serratus_M_contig964.20965.1|Name=mRNA_F-serratus_M_contig964.20965.1|organism=Fucus serratus male|type=CDS|length=1296bp|location=Sequence derived from alignment at F-serratus_M_contig964:206618..207277+ (Fucus serratus male)back to top |