mRNA_F-serratus_M_contig1010.207.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 243 bits (620), Expect = 1.720e-66 Identity = 114/200 (57.00%), Postives = 150/200 (75.00%), Query Frame = 1 Query: 475 FALRQMDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDGDSGDLSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEGANRAMSFGRHTKPSGDDMP 1074 + L M WYPGG+ + STTCI+E WESHSESVF+FLRD D+G LS GIQ+AY+C+ + S+SHVF ++GIGLTK DK+ + +A+Y AL TSSA+YKDKR D I I +PYA+L+MEIAQ TDSL ITEINP IAE+FG VGGFWDLL++ WP+FF+S+ +PHLK+RNFKK++ G+ + R + ++P Sbjct: 138 YILLNMYWYPGGTANASTTCISEEGEWESHSESVFMFLRDSDTGILSAGIQVAYSCMTSESSSHVFTYMGIGLTKEDKLYEDDTASYKALETSSAIYKDKRTDNITGIASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRGSEVVVDLSRRVNSASIEIP 337
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: A0A6H5L5Q2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q2_9PHAE) HSP 1 Score: 206 bits (523), Expect = 4.450e-55 Identity = 121/235 (51.49%), Postives = 131/235 (55.74%), Query Frame = 1 Query: 1867 NLDVFVDSDYAGKATYRGSGSGSVVMCAGACVSFFSRTRKSVALSSTEAE*VAMADGLKGAIFFRYLWSSIFPDRDVGCTVVKEDNVGALYRTNNPATVPNSKHIDVRHYFRVFVR*PPPMPATVSKPIPCLLSLIFLFFYWSGPSM*IFS*KQVYPAFCFSIWLPVAVNLLYFLVHAIDGVGGAIVETLFIPRRAARKEFKVVYVPSELQHEDFLTKPLQKEAFCVHRNFVVNL 2571 +L+V+VDSDYA KAT R S SG VVMCAG+CVSFFSRT+KSV LSSTEAE AMADG+K AIF RYLWS IFPD DVGCTV+KEDNVGAL+ NNPAT PNSKHIDVRH+F I R R EFKVVYVPS LQH DFLTKPL KEAF VHRNFV+NL Sbjct: 191 SLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFIFPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHF--------------------------------------------------------------------------------IRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 345
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE) HSP 1 Score: 202 bits (515), Expect = 2.610e-49 Identity = 120/235 (51.06%), Postives = 130/235 (55.32%), Query Frame = 1 Query: 1867 NLDVFVDSDYAGKATYRGSGSGSVVMCAGACVSFFSRTRKSVALSSTEAE*VAMADGLKGAIFFRYLWSSIFPDRDVGCTVVKEDNVGALYRTNNPATVPNSKHIDVRHYFRVFVR*PPPMPATVSKPIPCLLSLIFLFFYWSGPSM*IFS*KQVYPAFCFSIWLPVAVNLLYFLVHAIDGVGGAIVETLFIPRRAARKEFKVVYVPSELQHEDFLTKPLQKEAFCVHRNFVVNL 2571 +L+V+VDSDYA KAT R S SG VVMCAG+CVSFFSRT+KSV LSSTEAE AMADG+K AIF RYLWS I PD DVGCTV+KEDNVGAL+ NNPAT PNSKHIDVRH+F I R R EFKVVYVPS LQH DFLTKPL KEAF VHRNFV+NL Sbjct: 959 SLEVYVDSDYASKATDRRSVSGGVVMCAGSCVSFFSRTQKSVTLSSTEAEYAAMADGMKEAIFLRYLWSFISPDGDVGCTVIKEDNVGALHLANNPATTPNSKHIDVRHHF--------------------------------------------------------------------------------IRERVDRGEFKVVYVPSHLQHADFLTKPLPKEAFSVHRNFVMNL 1113
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: A0A6H5KZC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC8_9PHAE) HSP 1 Score: 176 bits (445), Expect = 7.980e-47 Identity = 104/235 (44.26%), Postives = 125/235 (53.19%), Query Frame = 1 Query: 1867 NLDVFVDSDYAGKATYRGSGSGSVVMCAGACVSFFSRTRKSVALSSTEAE*VAMADGLKGAIFFRYLWSSIFPDRDVGCTVVKEDNVGALYRTNNPATVPNSKHIDVRHYFRVFVR*PPPMPATVSKPIPCLLSLIFLFFYWSGPSM*IFS*KQVYPAFCFSIWLPVAVNLLYFLVHAIDGVGGAIVETLFIPRRAARKEFKVVYVPSELQHEDFLTKPLQKEAFCVHRNFVVNL 2571 ++++FVDSD+A KAT R S SG++VM AGACV + RT+KSV LSSTEAE VAM+DG+K AIF RYLW IFP RDVGCT V EDNVGA++ +NPAT PNSKHID+RH+F I R AR EFKVV+V S+LQ DFLTKPL KE FC HR+FV+N+ Sbjct: 22 HMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHF--------------------------------------------------------------------------------IRERVARGEFKVVHVRSDLQRADFLTKPLPKETFCAHRDFVMNI 176
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI) HSP 1 Score: 184 bits (467), Expect = 1.530e-46 Identity = 95/226 (42.04%), Postives = 140/226 (61.95%), Query Frame = 1 Query: 436 YFTKDASTSTIVIFALRQMDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDGDSGDLSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEGANRAMSFGRHTKPSG-DDMPRRTADEERPVWD 1110 + ++ + + L M WYPGG ++S TC+ EG W++H++ ++VFL D +S +S GIQ+ Y+C+ N S+SH F +VGIG+T DK+ E AL+ S+A KD+ + I V PYA L+++ Q+ +SL ITE++P +AE+FG VGGFWDLLMI WP+FFV++ +PHLK RNF K++ +G + G P G DD EERP W+ Sbjct: 203 FLDRERDAKYYLDYLLLDMYWYPGGLEADSNTCVVEG--WKTHNQWMYVFLNDPESERVSTGIQVPYSCITNVSSSHSFTYVGIGVTIEDKLGQEPIVNNKALSVSTATVKDEVNPAI---VKPYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFTKSVTKGLG-GLRIGDSKHPGGRDDFNSSPQVEERPYWE 422
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE) HSP 1 Score: 182 bits (463), Expect = 2.470e-46 Identity = 95/213 (44.60%), Postives = 136/213 (63.85%), Query Frame = 1 Query: 475 FALRQMDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDGDSGDLSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEGANRAMSFGRHT-KPSGDDMPRRTADEERPVWD 1110 + L M WYPGG +STTC+ EG W++H + ++VFL D G +S GIQ+ Y+C+ N S+SH +VGIG+T DK+ E AL+ S+A KD+ + I V PYA L++++ Q+ +SL ITE++P +AE+FG VGGFWDLLMI WP+FFV++ +PHLK RNFKK++ +G + G T + + DD EERP W+ Sbjct: 184 YLLLDMYWYPGGLEVDSTTCVVEG--WKTHKQWMYVFLNDPVLGQVSTGIQVPYSCITNVSSSHSHTYVGIGVTTEDKLGQEPIVNNKALSVSTATVKDEVNPAI---VKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFKKSVNKGLG-GLRVGDSTHRGARDDFNGSPPVEERPYWE 390
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 181 bits (458), Expect = 4.480e-46 Identity = 98/232 (42.24%), Postives = 147/232 (63.36%), Query Frame = 1 Query: 436 YFTKDASTSTIVIFALRQMDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDG---DSGDLSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEGANRAMSFGR----HTKPSGDDMPRRTADEERPVWD 1110 + ++ + S + + L M WYPGG+ S+S TC+ EG WE HSE ++V L+D +SG +S GIQ+ Y+C+ N S+SH F +VG+G+T +++ E AT AL+ S+A +KDK + I PYA L+++ Q+ +SL ITE +PF +AE+FG VGGFWDLLM+ WP+FFV++ +PHLK RNFKK++ +G + G T+ G P +EE+P W+ Sbjct: 129 FLGQERNASYYLDYLLLDMYWYPGGTESDSNTCVVEG--WEPHSEWMYVKLKDSGYPESGLVSTGIQVPYSCITNVSSSHSFTYVGMGVTIEERLGEEPVATNKALSVSTATHKDKVNAAIDK---PYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLE-GLRIGELVTAGTRKDGSSNPED--EEEKPHWE 352
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: A0A6H5L518_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L518_9PHAE) HSP 1 Score: 179 bits (454), Expect = 6.710e-45 Identity = 94/244 (38.52%), Postives = 139/244 (56.97%), Query Frame = 1 Query: 415 RVPCGESYFTKDASTSTIVIFALRQMDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDGDSGD-LSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEGANRAMSFGRH-----------TKPSGDDMPRRTADEERPVWD 1110 R ++ ++ + + L M W PGG+ STTC+ +G W H E V+ FL D D +S G+ ++Y+C+ N SN+H FN +GIGLT+ K + ++Y AL T+ ++K+ + NI PYA+L++E+ QQ DS ITE NP+ AE+FG +GGFWDLL+I WPL FV++ +PHLK R+FKK++ GA RA S + TK + + +EE P WD Sbjct: 177 RTSAATAFVGQERDPHEFLDYILLDMYWNPGGTSGKSTTCVPDGVEWTDHREWVYGFLSDPDDPSAISTGVHLSYSCITNTSNTHTFNTMGIGLTQQKKFMDDDKSSYKALFTNFGVHKNVVNP---NITTPYAHLSLEMKQQFDSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVAAAQQDPHLKPRSFKKSVVRGAERAASVSKAIARAAPINPSITKSAASAVDGFEDEEEAPAWD 417
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: D8LNQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ3_ECTSI) HSP 1 Score: 178 bits (452), Expect = 6.800e-45 Identity = 88/181 (48.62%), Postives = 121/181 (66.85%), Query Frame = 1 Query: 490 MDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDG-DSGDLSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEGANRA 1029 M WYPGG NSTTC+AEG W H E V+ FL D DS +S G ++Y+C+ N SN+H+FN +GIGLT +K + ++Y AL T+ ++K+ + N+ PYA+L++E+ QQ DS ITE NP+ AE+FG +GGFWDLL+I WPL FV++ +PHLK R FKK++ GA RA Sbjct: 179 MYWYPGGKFGNSTTCVAEGVEWADHREWVYGFLSDPEDSTAISTGFPLSYSCITNTSNTHIFNTLGIGLTNQNKFMEDDISSYKALFTNFGVHKNTVNP---NVTMPYAHLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVTATQQDPHLKPRTFKKSVIRGAERA 356
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.070e-44 Identity = 89/182 (48.90%), Postives = 127/182 (69.78%), Query Frame = 1 Query: 481 LRQMDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDG---DSGDLSVGIQMAYNCVNNASNSHVFNFVGIGLTKVDKISGEQSATYSALATSSALYKDKRDDKIKNIVNPYAYLTMEIAQQTDSLVTITEINPFAIAEIFGQVGGFWDLLMIFWPLFFVSSYSTEPHLKIRNFKKTLQEG 1017 L M WYPGG+ S+S TC+ EG WE HSE ++V L+D +SG +S GIQ+ Y+C+ N S+SH F +VGIG+T +++ E AT AL+ S+A ++DK + I PYA L+++ Q+ +SL ITE +PF +AE+FG VGGFWDLLM+ WP+FFV++ +PHLK RNFKK++ +G Sbjct: 101 LGDMYWYPGGTESDSNTCVVEG--WEPHSEWMYVKLKDPGYPESGLVSTGIQVPYSCITNVSSSHSFTYVGIGVTIEERLGEEPVATNKALSVSTATHRDKVNAAIDK---PYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKG 277 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1010.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1010.207.1 >prot_F-serratus_M_contig1010.207.1 ID=prot_F-serratus_M_contig1010.207.1|Name=mRNA_F-serratus_M_contig1010.207.1|organism=Fucus serratus male|type=polypeptide|length=341bp MDWYPGGSPSNSTTCIAEGDNWESHSESVFVFLRDGDSGDLSVGIQMAYNback to top mRNA from alignment at F-serratus_M_contig1010:128768..136789+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1010.207.1 ID=mRNA_F-serratus_M_contig1010.207.1|Name=mRNA_F-serratus_M_contig1010.207.1|organism=Fucus serratus male|type=mRNA|length=8022bp|location=Sequence derived from alignment at F-serratus_M_contig1010:128768..136789+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1010:128768..136789+ >mRNA_F-serratus_M_contig1010.207.1 ID=mRNA_F-serratus_M_contig1010.207.1|Name=mRNA_F-serratus_M_contig1010.207.1|organism=Fucus serratus male|type=CDS|length=2046bp|location=Sequence derived from alignment at F-serratus_M_contig1010:128768..136789+ (Fucus serratus male)back to top |