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Homology
BLAST of mRNA_F-serratus_M_contig953.20894.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.780e-42 Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 3
Query: 36 VELKWQFDAASAPYGLVERLISSCHVLGNVKFPACWRYGALFASRQSMRRHGKEIPF----TFLIRYHE--RMLSLRMIGLLSNGRVLAALRYVASAMVILSMEWPGVQWEGWLHCPNHPGTRMYLTKPREARIGGPLVHEQIQDEDSMNCDCQLQPNGVLQLVYQRLGTVVDTRKGHPIEGFEEE 575
V LKW+FD A PYGL+ERLI+SCHVLG V+ ACWRYGA+F S G+ + F + Y+E R+ + ++ G L + RV A+RYVASAM+ LS EWPGV W GWL C HP +Y+ EAR+G PL+ D + CDC L+P GVL+L + LG V+DT K P EG +E
Sbjct: 513 VTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAAPD--ARRCDCLLEPGGVLRLAVEELGPVIDTGKD-PFEGLSDE 695
BLAST of mRNA_F-serratus_M_contig953.20894.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.080e-37 Identity = 82/180 (45.56%), Postives = 108/180 (60.00%), Query Frame = 3
Query: 21 HDHQEVELKWQFDAASAPYGLVERLISSCHVLGNVKFPACWRYGALFASRQSMRRHGKEIPFTFLIRY------HERMLSLRMIGLLSNGRVLAALRYVASAMVILSMEWPGVQWEGWLHCPNHPGTRMYLTKPREARIGGPLVHEQIQDEDSMNCDCQLQPNGVLQLVYQRLGTVVDTR 542
H +EV L W+FD+A PYGLVER+I+SCH +G V+ CWRYGA+F SR G + +TF++RY R+LS+RM G L + RV AALR+VAS++V +S +WPGV WEGW C R Y +A IG L+ + CDC VL+LV +RLG VVDT+
Sbjct: 658 HSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSDRLYTFVVRYDSAVGNERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFATSDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLERLGKVVDTQ 837
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 98.6 |
Seed ortholog evalue | 2.9e-18 |
Seed eggNOG ortholog | 2880.D7FVX5 |
Preferred name | SLITRK2 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026 |
EggNOG free text desc. | positive regulation of synapse assembly |
EggNOG OGs | 2CMPC@1,2QR6C@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 3 |
Model size | 1601 |
Cds size | 492 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932723.1461055-UTR-F-serratus_M_contig953:22960..23136 | 1622932723.1461055-UTR-F-serratus_M_contig953:22960..23136 | Fucus serratus male | UTR | F-serratus_M_contig953 22961..23136 + |
1690964441.2235749-UTR-F-serratus_M_contig953:22960..23136 | 1690964441.2235749-UTR-F-serratus_M_contig953:22960..23136 | Fucus serratus male | UTR | F-serratus_M_contig953 22961..23136 + |
1622932723.2502913-UTR-F-serratus_M_contig953:24143..25076 | 1622932723.2502913-UTR-F-serratus_M_contig953:24143..25076 | Fucus serratus male | UTR | F-serratus_M_contig953 24144..25076 + |
1690964441.281793-UTR-F-serratus_M_contig953:24143..25076 | 1690964441.281793-UTR-F-serratus_M_contig953:24143..25076 | Fucus serratus male | UTR | F-serratus_M_contig953 24144..25076 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932723.188164-CDS-F-serratus_M_contig953:23136..23370 | 1622932723.188164-CDS-F-serratus_M_contig953:23136..23370 | Fucus serratus male | CDS | F-serratus_M_contig953 23137..23370 + |
1690964441.2417989-CDS-F-serratus_M_contig953:23136..23370 | 1690964441.2417989-CDS-F-serratus_M_contig953:23136..23370 | Fucus serratus male | CDS | F-serratus_M_contig953 23137..23370 + |
1622932723.212476-CDS-F-serratus_M_contig953:23566..23702 | 1622932723.212476-CDS-F-serratus_M_contig953:23566..23702 | Fucus serratus male | CDS | F-serratus_M_contig953 23567..23702 + |
1690964441.2550957-CDS-F-serratus_M_contig953:23566..23702 | 1690964441.2550957-CDS-F-serratus_M_contig953:23566..23702 | Fucus serratus male | CDS | F-serratus_M_contig953 23567..23702 + |
1622932723.2309668-CDS-F-serratus_M_contig953:24021..24143 | 1622932723.2309668-CDS-F-serratus_M_contig953:24021..24143 | Fucus serratus male | CDS | F-serratus_M_contig953 24022..24143 + |
1690964441.2724445-CDS-F-serratus_M_contig953:24021..24143 | 1690964441.2724445-CDS-F-serratus_M_contig953:24021..24143 | Fucus serratus male | CDS | F-serratus_M_contig953 24022..24143 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig953.20894.1 >prot_F-serratus_M_contig953.20894.1 ID=prot_F-serratus_M_contig953.20894.1|Name=mRNA_F-serratus_M_contig953.20894.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MRRHGKEIPFTFLIRYHERMLSLRMIGLLSNGRVLAALRYVASAMVILSM EWPGVQWEGWLHCPNHPGTRMYLTKPREARIGGPLVHEQIQDEDSMNCDC QLQPNGVLQLVYQRLGTVVDTRKGHPIEGFEEETILQRIQRSLNAVAGFS MFGGRGPSKRREH* back to topmRNA from alignment at F-serratus_M_contig953:22961..25076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig953.20894.1 ID=mRNA_F-serratus_M_contig953.20894.1|Name=mRNA_F-serratus_M_contig953.20894.1|organism=Fucus serratus male|type=mRNA|length=2116bp|location=Sequence derived from alignment at F-serratus_M_contig953:22961..25076+ (Fucus serratus male) CTGCTATCGGGGAGGCACTTCACGACCATCAGGAGGTGGAACTCAAATGG
CAGTTTGACGCTGCGAGTGCTCCGTACGGGTTGGTGGAGCGACTGATATC
TTCGTGCCATGTCCTTGGAAACGTAAAGTTTCCTGCGTGCTGGAGGTACG
GGGCGTTGTTCGCGAGTCGTCAATCGATGCGGAGGCATGGCAAGGAGATC
CCATTTACGTTCCTCATCCGCTACCACGAGCGCATGCTGTCCTTGAGGAT
GATAGGTCTTCTCTCAAATGGCCGAGTGTTGGCTGCACTACGTTACGTGG
CATCCGCTATGGTTATTCTTTCCATGGAATGGCCCGGAGTACAATGGGAG
GGCTGGCTTCACTGCCCGAACCATCCGGGTACCCGCATGTACTTGACGAA
ACCACGCGAGGTACGATTAACATTCTACATTTCCTTAAACGAGGTATGAT
TTGCTTTGATTCCTATACAGGTGTTACTTAAGTTGAGTGAGCCCCTCGTA
CTTTCTCGACGTTATCGGAGGAGATTCTCTATAGAGATACACTTATTGTA
GACTGGTTGTATCGCTCAAGATGAGATGCGATGTTTTATACGTTTGGATC
AAATAGGCAAGAATTGGGGGCCCGCTGGTGCACGAGCAAATCCAAGATGA
GGATAGCATGAATTGTGACTGCCAACTACAGCCTAATGGAGTGCTCCAGC
TAGTTTACCAACGTCTTGGCACGGTAGTCGACACGAGAAAAGGTGCGGAT
GTTGACGCTACTTATTTGTGGTATATTTTCTGTCATCTTGCATCGCCCCT
ACATATTATGATATTACGTAGTTGCTTCACAGTTGGAGACGGGCATTTCC
CTCAAGATGTTTTCGTTTTTTAATACAGAGTCGTGCCTTATTTTTGTTTT
CGTGCGAAATGATTAACACTTACAATCCCGCTGAGAGCTTACATGGATAA
ACATTGTATTAAGAGTTTTCTAAGCGGAACGTATGTCAAGTACGACCGAT
TATATAGCACGAAAGTGTACCTTGTACCAACTAATTGTTGCGTTCCAACT
GTTCTTCACAGGTCATCCGATCGAGGGGTTCGAGGAAGAAACCATCCTCC
AGAGGATCCAGAGGAGCCTCAATGCTGTCGCGGGGTTTTCAATGTTTGGC
GGCCGAGGGCCTAGTAAACGGCGGGAGCACTAGGAACGCTGGCCGCGACC
CTTTCCTGTTCAGCAGCCGTCGCGGGCATCGTCGAAGAGAAGGACATTCT
TTGGTGGCGGCTTTGGTTGTCTCAGTGCTCGCCCAACGTCACATGAACCG
GATTACGCAAAGTTGTTCCGATGATCATGTTGTTTAGCCTAGGGCGCTTG
CCTTGAGATTGTTTCAAAAAGCTTCCGTCGCGGTGCCATAAAAGAGGGGT
TGAATCTAACGACTCAAATTATTTTGCTAGTGAACTGAATTCTGGTCCAG
GCAAGACCTTGTACTGCGTCTGAACTCTGAAACGCTCACAGTTTACTTAC
ATAATGCGTCAGGTTGGGCACGTCTTAACTTTTTCTTGCGCGATTTTACA
GAAATACTAGGGGTTGGAACCAGGAATATATTTTACAACGTGTACATGCG
CAACGTGGCTCGTTGTCTTGCGGAGCAGCACTGCAAGAGTATGTTGTATT
TTCCCGGTGGAGATTTATGTGCTATTTAAATGCTTTTCTTCCGAAAGTTT
CTGTACATCCTGGCTTGCGTCGTCTAGCATACGTTGCGTCCAGTTTATCG
TCGCTCTTTCGGAGAGTTCTATATTTCCCCCTTCAGGCACACCGTCAGTG
TTGACCTCGTTTGGCGTAGTGTGTTCGATTATCTTTTAGAATATTCAGTC
AGTCTGTGTCATCAATTTGCCTACTTGTTTCCGCTGTTGTTCGACTTTCG
CAATTTTTTGCCCGGGGTTTTTCCTGTGAAGAAGCTTGATCGATGTGCCC
GTCCTTCTGCTTTGATTTGGGGGAAGTTTCGTAGCTGTATAAGTTAGTAC
GGTTGTTGGCTCAGTAAAAAGGCTGGTTTGCCACAGCACGCCCAAATTAA
TTTAGTTCGGGTCGGAGCACTAAACAGCGCATCACACGCCTGGAATAGCG
AGCAGCCAGTACATGA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig953:22961..25076+ >mRNA_F-serratus_M_contig953.20894.1 ID=mRNA_F-serratus_M_contig953.20894.1|Name=mRNA_F-serratus_M_contig953.20894.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig953:22961..25076+ (Fucus serratus male) ATGCGGAGGCATGGCAAGGAGATCCCATTTACGTTCCTCATCCGCTACCA CGAGCGCATGCTGTCCTTGAGGATGATAGGTCTTCTCTCAAATGGCCGAG TGTTGGCTGCACTACGTTACGTGGCATCCGCTATGGTTATTCTTTCCATG GAATGGCCCGGAGTACAATGGGAGGGCTGGCTTCACTGCCCGAACCATCC GGGTACCCGCATGTACTTGACGAAACCACGCGAGATGCGGAGGCATGGCA AGGAGATCCCATTTACGTTCCTCATCCGCTACCACGAGCGCATGCTGTCC TTGAGGATGATAGGTCTTCTCTCAAATGGCCGAGTGTTGGCTGCACTACG TTACGTGGCATCCGCTATGGTTATTCTTTCCATGGAATGGCCCGGAGTAC AATGGGAGGGCTGGCTTCACTGCCCGAACCATCCGGGTACCCGCATGTAC TTGACGAAACCACGCGAGGCAAGAATTGGGGGCCCGCTGGTGCACGAGCA AATCCAAGATGAGGATAGCATGAATTGTGACTGCCAACTACAGCCTAATG GAGTGCTCCAGCTAGTTTACCAACGTCTTGGCACGGTAGTCGACACGAGA AAAGGCAAGAATTGGGGGCCCGCTGGTGCACGAGCAAATCCAAGATGAGG ATAGCATGAATTGTGACTGCCAACTACAGCCTAATGGAGTGCTCCAGCTA GTTTACCAACGTCTTGGCACGGTAGTCGACACGAGAAAAGGTCATCCGAT CGAGGGGTTCGAGGAAGAAACCATCCTCCAGAGGATCCAGAGGAGCCTCA ATGCTGTCGCGGGGTTTTCAATGTTTGGCGGCCGAGGGCCTAGTAAACGG CGGGAGCACTAGGTCATCCGATCGAGGGGTTCGAGGAAGAAACCATCCTC CAGAGGATCCAGAGGAGCCTCAATGCTGTCGCGGGGTTTTCAATGTTTGG CGGCCGAGGGCCTAGTAAACGGCGGGAGCACTAG back to top
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