mRNA_F-serratus_M_contig95.20859.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig95.20859.1
Unique NamemRNA_F-serratus_M_contig95.20859.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.020e-25
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDETDAE 221
            +N+DTLMNAFTTIF ILSG++W+ VM+DARRATGWVSV YFVSLII+GMMI+M LFLAILLSNF  +D+ DAE
Sbjct:  675 SNFDTLMNAFTTIFEILSGENWNTVMYDARRATGWVSVFYFVSLIIMGMMIVMNLFLAILLSNFTNKDDVDAE 747          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.050e-23
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIF------VILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDETDAE 221
            +N+DTLMNAFTTIF       ILSG++W+ VM+DARRATGWVSV YFVSLII+GMMI+M LFLAILLSNF  +D+ DAE
Sbjct:  171 SNFDTLMNAFTTIFEASRCSTILSGENWNTVMYDARRATGWVSVFYFVSLIIMGMMIVMNLFLAILLSNFTNKDDVDAE 249          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 5.160e-21
Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGG--EDETDAE 221
            +N+DTL++AFTT+F +LSG++W+A M+ ARRA GWVSV YFVSLII+GMMI+M+LFLAILLS+F    +DE DAE
Sbjct:  407 SNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVFYFVSLIIVGMMIVMSLFLAILLSHFATPEQDEADAE 481          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.310e-20
Identity = 46/72 (63.89%), Postives = 64/72 (88.89%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDETDA 218
            +N+DTL++AFTT+F +LSG++W+A M+ ARRA GWVSVIYFVSLI++GMMI+M+LFLAILLS+F   ++ +A
Sbjct:  793 SNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVIYFVSLIVVGMMIVMSLFLAILLSHFATPEQDEA 864          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7S1GBX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBX1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 8.360e-16
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDE 209
            A++D L+ AF TIF +L+G++W+ VM+D  RATGW SV+YFVSL++LG  I++ LFLAILL NF G +E
Sbjct:  473 AHFDDLLWAFVTIFQVLTGENWNVVMYDGWRATGWTSVLYFVSLVVLGNFIVLNLFLAILLGNFEGMEE 541          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7R9YD26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD26_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.930e-15
Identity = 40/77 (51.95%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGE-DETDAEEES 230
            AN+D+ +N+  T+F++L+ + W+ VM+DA RATGW +VIYFV+LI+LG++ ++ LFLAILLS F    D+ D E+ES
Sbjct:  231 ANFDSFLNSMATVFIVLTAEMWNTVMYDAWRATGWPAVIYFVALIVLGLVFVLNLFLAILLSAFESRLDDEDKEDES 307          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: J9FXK4_9SPIT (Voltage-gated Ion Channel (VIC) Superfamily n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9FXK4_9SPIT)

HSP 1 Score: 80.5 bits (197), Expect = 8.130e-15
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 3
Query:    6 NYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFGGEDE 209
            N+DT +NAFTTIF++L GD W+ +M++  R+TG  S+++FV+L+I G MI+M LFLAILL NFG EDE
Sbjct:  766 NFDTFLNAFTTIFIVLIGDGWNNIMYNYARSTGGPSMVFFVTLVIFGKMILMNLFLAILLRNFG-EDE 832          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7S2QWF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWF6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.030e-14
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    6 NYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNFG 197
            N+D    AF TIF ILSG++W+AVM+D  RAT  ++V+YF SLI+ GM I+MTLFLAILL+NFG
Sbjct:  720 NFDDFHFAFVTIFQILSGENWNAVMYDGWRATSGLAVVYFFSLIVFGMFIVMTLFLAILLNNFG 783          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: G4YKH5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YKH5_PHYSP)

HSP 1 Score: 79.0 bits (193), Expect = 2.750e-14
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNF--GGEDETDAEEE 227
            AN+DT++ +  T+F IL+G++W+ VM D  R++GW SV+YFVSL++LG  I++ LFLAILL NF    ++E DAE E
Sbjct:  530 ANFDTMLWSVVTVFQILTGENWNVVMLDGWRSSGWSSVLYFVSLVVLGNFIVLNLFLAILLGNFDESNDEERDAERE 606          
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Match: A0A7S2PB29_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB29_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-12
Identity = 33/64 (51.56%), Postives = 53/64 (82.81%), Query Frame = 3
Query:    3 ANYDTLMNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLFLAILLSNF 194
            +N+D+L+ + TT+F IL+G++W++VM+D RRAT   +V+YF+SL++ G+ I+M LFLAIL+ NF
Sbjct:  646 SNFDSLVWSMTTVFQILTGENWNSVMYDGRRATSGAAVLYFLSLVVFGVFIVMNLFLAILIGNF 709          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE6_ECTSI1.020e-2576.71Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5JIB7_9PHAE1.050e-2370.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI93_ECTSI5.160e-2166.67Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE1.310e-2063.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1GBX1_9STRA8.360e-1657.97Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9YD26_9STRA1.930e-1551.95Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
J9FXK4_9SPIT8.130e-1558.82Voltage-gated Ion Channel (VIC) Superfamily n=2 Ta... [more]
A0A7S2QWF6_9STRA2.030e-1462.50Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
G4YKH5_PHYSP2.750e-1451.95Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A7S2PB29_9STRA1.130e-1251.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig95contigF-serratus_M_contig95:743060..743740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog2880.D7FVE6
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons2
Model size439
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig95.20859.1prot_F-serratus_M_contig95.20859.1Fucus serratus malepolypeptideF-serratus_M_contig95 743060..743720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932716.0575347-CDS-F-serratus_M_contig95:743059..7434491622932716.0575347-CDS-F-serratus_M_contig95:743059..743449Fucus serratus maleCDSF-serratus_M_contig95 743060..743449 -
1690964437.710688-CDS-F-serratus_M_contig95:743059..7434491690964437.710688-CDS-F-serratus_M_contig95:743059..743449Fucus serratus maleCDSF-serratus_M_contig95 743060..743449 -
1622932716.0974414-CDS-F-serratus_M_contig95:743693..7437201622932716.0974414-CDS-F-serratus_M_contig95:743693..743720Fucus serratus maleCDSF-serratus_M_contig95 743694..743720 -
1690964437.725413-CDS-F-serratus_M_contig95:743693..7437201690964437.725413-CDS-F-serratus_M_contig95:743693..743720Fucus serratus maleCDSF-serratus_M_contig95 743694..743720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932716.1155832-UTR-F-serratus_M_contig95:743720..7437401622932716.1155832-UTR-F-serratus_M_contig95:743720..743740Fucus serratus maleUTRF-serratus_M_contig95 743721..743740 -
1690964437.7358646-UTR-F-serratus_M_contig95:743720..7437401690964437.7358646-UTR-F-serratus_M_contig95:743720..743740Fucus serratus maleUTRF-serratus_M_contig95 743721..743740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig95.20859.1

>prot_F-serratus_M_contig95.20859.1 ID=prot_F-serratus_M_contig95.20859.1|Name=mRNA_F-serratus_M_contig95.20859.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MNAFTTIFVILSGDSWSAVMFDARRATGWVSVIYFVSLIILGMMIIMTLF
LAILLSNFGGEDETDAEEESNKGDDHDEKGDGDKGESKSTEEEGNKRNRS
DGEMGIVGNSERVGRAGAPRTDGRTTKNIIDEIDYSVGG
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mRNA from alignment at F-serratus_M_contig95:743060..743740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig95.20859.1 ID=mRNA_F-serratus_M_contig95.20859.1|Name=mRNA_F-serratus_M_contig95.20859.1|organism=Fucus serratus male|type=mRNA|length=681bp|location=Sequence derived from alignment at F-serratus_M_contig95:743060..743740- (Fucus serratus male)
GGGCTAACTACGACACGCTTATGAATGCCTTCACCACCATCTTTGTGGTA AGGCCAAGCCTTGCGTTTTCGTCACGTGGGGGCCGAGTCGCCGCGTTTTT TGCGAGCGCGTGACGTGGGGGTGGAGGCGCGTGCAGCATGAGCTTGTCTA ATTAGGGCATACTTTCATGCTCTACGATATCGGCTGTACCTTCTTTTTGC CCCTTTTCGTCACCACCAGACCAAATAAATTATTTCACGTGTCGGACACA CACATACACAAGCAATCACGCGCGCACGCGGGCGCACGCAGATTCTGTCG GGTGACAGCTGGAGTGCGGTGATGTTCGACGCAAGGCGGGCGACGGGCTG GGTGAGCGTGATCTACTTCGTGAGCCTAATCATCTTGGGCATGATGATCA TCATGACCCTCTTCCTGGCGATCCTCCTGTCTAACTTCGGGGGGGAAGAC GAGACTGATGCGGAAGAAGAGAGCAACAAAGGTGATGACCACGACGAGAA GGGCGATGGCGACAAGGGCGAATCCAAAAGCACCGAAGAAGAGGGAAACA AGCGAAATCGCTCGGACGGTGAGATGGGCATCGTCGGCAACTCGGAAAGG GTCGGGCGGGCTGGCGCGCCTCGCACCGATGGGCGCACGACAAAAAATAT AATCGACGAGATCGACTACAGCGTTGGGGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig95:743060..743740-

>mRNA_F-serratus_M_contig95.20859.1 ID=mRNA_F-serratus_M_contig95.20859.1|Name=mRNA_F-serratus_M_contig95.20859.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig95:743060..743740- (Fucus serratus male)
ATGAATGCCTTCACCACCATCTTTGTGATGAATGCCTTCACCACCATCTT
TGTGATTCTGTCGGGTGACAGCTGGAGTGCGGTGATGTTCGACGCAAGGC
GGGCGACGGGCTGGGTGAGCGTGATCTACTTCGTGAGCCTAATCATCTTG
GGCATGATGATCATCATGACCCTCTTCCTGGCGATCCTCCTGTCTAACTT
CGGGGGGGAAGACGAGACTGATGCGGAAGAAGAGAGCAACAAAGGTGATG
ACCACGACGAGAAGGGCGATGGCGACAAGGGCGAATCCAAAAGCACCGAA
GAAGAGGGAAACAAGCGAAATCGCTCGGACGGTGAGATGGGCATCGTCGG
CAACTCGGAAAGGGTCGGGCGGGCTGGCGCGCCTCGCACCGATGGGCGCA
CGACAAAAAATATAATCGACGAGATCGACTACAGCGTTGGGGGTATTCTG
TCGGGTGACAGCTGGAGTGCGGTGATGTTCGACGCAAGGCGGGCGACGGG
CTGGGTGAGCGTGATCTACTTCGTGAGCCTAATCATCTTGGGCATGATGA
TCATCATGACCCTCTTCCTGGCGATCCTCCTGTCTAACTTCGGGGGGGAA
GACGAGACTGATGCGGAAGAAGAGAGCAACAAAGGTGATGACCACGACGA
GAAGGGCGATGGCGACAAGGGCGAATCCAAAAGCACCGAAGAAGAGGGAA
ACAAGCGAAATCGCTCGGACGGTGAGATGGGCATCGTCGGCAACTCGGAA
AGGGTCGGGCGGGCTGGCGCGCCTCGCACCGATGGGCGCACGACAAAAAA
TATAATCGACGAGATCGACTACAGCGTTGGGGGT
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