mRNA_F-serratus_M_contig949.20817.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A6H5KXY4_9PHAE (YjgF_endoribonc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXY4_9PHAE) HSP 1 Score: 290 bits (741), Expect = 3.460e-94 Identity = 147/191 (76.96%), Postives = 167/191 (87.43%), Query Frame = 2 Query: 80 MFRRVATVAGR--ITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFEDNAGTGSKRSSDNDWKVTKRP 646 M RRV+++ GR + R VHTEAKL+++GIELPTPKAPLGNFVM+VRTGNL+YT+GHLP S++GE TTGKVG +++EEEA+EAARKVAIQLIA++KKDLGDLDRV RIVKLVGFVNCTDGF QPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEF+D G D+DW V KRP Sbjct: 1 MLRRVSSLVGRAAVRPRRVHTEAKLKELGIELPTPKAPLGNFVMTVRTGNLLYTSGHLPTSLEGETTTGKVGQELNEEEAQEAARKVAIQLIASIKKDLGDLDRVTRIVKLVGFVNCTDGFAGQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFDDGGKKG-----DDDWTVLKRP 186
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A4D9CNR9_9STRA (YjgF_endoribonc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNR9_9STRA) HSP 1 Score: 220 bits (561), Expect = 4.280e-67 Identity = 106/168 (63.10%), Postives = 139/168 (82.74%), Query Frame = 2 Query: 83 FRRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFED 586 F + T+AG ++ +HTEAKL +MG++LP+P P GNF M+V++G +IY +GHLP +G+L TGKVG +VS EEA+ AA+ +A+ L+++LKK++GDLDRVKRIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE ED Sbjct: 20 FPQSTTIAG---SQKIHTEAKLTEMGLKLPSPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: W7TB75_9STRA (Endoribonuclease l-psp n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB75_9STRA) HSP 1 Score: 219 bits (559), Expect = 4.470e-66 Identity = 106/168 (63.10%), Postives = 138/168 (82.14%), Query Frame = 2 Query: 83 FRRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFED 586 F + T+AG ++ +HTEAKL +MG++LP P P GNF M+V++G +IY +GHLP +G+L TGKVG +VS EEA+ AA+ +A+ L+++LKK++GDLDRVKRIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE ED Sbjct: 71 FPQSTTIAG---SQKIHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A5A8CF06_CAFRO (YjgF_endoribonc domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CF06_CAFRO) HSP 1 Score: 216 bits (551), Expect = 1.150e-65 Identity = 106/175 (60.57%), Postives = 133/175 (76.00%), Query Frame = 2 Query: 89 RVATVAGRIT---------ARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFED 586 R AT A R T ARGVHTEAK+++MG++LPTP P N++M R GNL++TAGHLP+ DG+L GKVG D + EEA AAR+ A+ ++ T+K ++GDLD+VKR+VKL GFVNC D F+AQPKV+NGASD EV GERGVH RSAVGTNALPMNVPVE+EAI+E ++ Sbjct: 5 RAATAAMRATSAPAVRALAARGVHTEAKIEEMGLKLPTPPTPAANYIMCHRVGNLLFTAGHLPMQEDGQLFNGKVGKDFTTEEAYTAARQCALAILGTVKAEIGDLDKVKRVVKLTGFVNCVDAFSAQPKVLNGASDFMGEVLGERGVHVRSAVGTNALPMNVPVEVEAIIEIDE 179
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A812PJA3_9DINO (TCP17 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PJA3_9DINO) HSP 1 Score: 212 bits (539), Expect = 1.070e-63 Identity = 110/180 (61.11%), Postives = 137/180 (76.11%), Query Frame = 2 Query: 41 SASSILPSPTAGTMFRRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEF 580 +AS P A M R VA R+ A GVHTEAKL+++G+ELP P N+++SVR+G+ I+TAGHLP+ DG L +GKVG D++ EEA AA V + +++TLK +LGDLDRVKRIVKL GFVNC D F+AQPKV+NG SDLF +VFG RGVH+RSA+GTNALP+NVPVEIEAIVE Sbjct: 4 AASRAAPVACARVMPRAVA----RLGACGVHTEAKLEELGLELPPPGKAQANYILSVRSGDTIFTAGHLPMMHDGTLMSGKVGVDLNTEEAYAAAELVGLNILSTLKAELGDLDRVKRIVKLNGFVNCVDSFSAQPKVINGISDLFGKVFGARGVHARSALGTNALPLNVPVEIEAIVEL 179
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A4D9CNR0_9STRA (YjgF_endoribonc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNR0_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.260e-63 Identity = 103/153 (67.32%), Postives = 126/153 (82.35%), Query Frame = 2 Query: 128 VHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFED 586 V EA+L Q+GI+LP AP GN+ ++VRTGNL++ AGH+P+ G L TGKVG D S EE +EAA+ +AI L+ATLK +LGDLD+VKRIVKLVGFVNC DGF+ QP VVNGASD F +VFG++GVH+RSAVGTNALP+N+PVEIEAIVE ED Sbjct: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKSGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 154
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A835Z1E3_9STRA (Putative translation initiation inhibitor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E3_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.990e-62 Identity = 101/168 (60.12%), Postives = 130/168 (77.38%), Query Frame = 2 Query: 86 RRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFEDN 589 + VAT ++ RGV EA+L Q GI+L P P GN+V +VR+GN ++ AGH+P+ D L GKVG DV+ E+A AR+VAI +++TLK +LGDLDRV RIVKLVGFVNCTD FT QP V+NGASDLF EVFG++GVH+RSAVGTNALP+ +PVEIEA++EF ++ Sbjct: 7 KAVATPTFQLAKRGVQIEARLAQRGIQLSDPVPPKGNYVPAVRSGNTLFLAGHIPLMPDNNLAKGKVGKDVTPEQANAIARQVAINILSTLKVELGDLDRVTRIVKLVGFVNCTDDFTGQPGVINGASDLFVEVFGKKGVHARSAVGTNALPLGIPVEIEAVIEFSED 174
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A024UKU1_9STRA (YjgF_endoribonc domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UKU1_9STRA) HSP 1 Score: 206 bits (524), Expect = 8.890e-62 Identity = 103/169 (60.95%), Postives = 128/169 (75.74%), Query Frame = 2 Query: 80 MFRRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFED 586 MFR + A AR VHTEA+++++G LP P GN+ SVR GNLI+TAGHLP GEL GKVG D++ EE EAA VA+ L+ATLK++LGDLDRVKRIVK+VGFVNC DGFTAQP V+NG SD ++FG+RG+H+RSAVGTNALP+ +PVE+E IVE +D Sbjct: 1 MFRSLLKPAAA-AARFVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGDRGIHARSAVGTNALPLGIPVEVEIIVEIQD 168
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A2R5GI79_9STRA (Protein TCP17 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI79_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.040e-61 Identity = 98/161 (60.87%), Postives = 129/161 (80.12%), Query Frame = 2 Query: 104 AGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFED 586 A + RGVHTEAKL+++G LP +P G++ + VR+GN ++TAGHLP +G+L GKVG D+S EEA +AA+ A+ ++ATLK +LGDLDRV R+VK+VGFVNC DGF QP+V+NGASDLFAEV GERG+H+RSAVGTN+LP+N+PVE+EAIVE + Sbjct: 23 AAPVLMRGVHTEAKLEKLGYTLPQVASPKGSYQLCVRSGNQMFTAGHLPQPANGDLLVGKVGVDLSVEEANKAAQYCALSILATLKAELGDLDRVARVVKVVGFVNCADGFAQQPQVINGASDLFAEVLGERGLHARSAVGTNSLPLNIPVEVEAIVEISE 183
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Match: A0A6G0WDN9_9STRA (YjgF_endoribonc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDN9_9STRA) HSP 1 Score: 205 bits (521), Expect = 2.670e-61 Identity = 101/170 (59.41%), Postives = 128/170 (75.29%), Query Frame = 2 Query: 80 MFRRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIYTAGHLPISIDGELTTGKVGHDVSEEEAKEAARKVAIQLIATLKKDLGDLDRVKRIVKLVGFVNCTDGFTAQPKVVNGASDLFAEVFGERGVHSRSAVGTNALPMNVPVEIEAIVEFEDN 589 MF RV + R VHTE +++++G LP AP GN+ SVR+GN+I+TAGHLP G+L GK+G D++ ++ EAA+ A+ L ATLK +LGDLD+VKRIVK+VGFVNC DGFTAQP+V+NGASD ++FGERGVHSRSAVGTNALP+ V VE+E IVE EDN Sbjct: 1 MFSRVLAKSSSALRRSVHTENRIKELGYTLPGVAAPKGNYRNSVRSGNMIFTAGHLPQPAGGDLVKGKIGDDLTIDQGYEAAQHCALALCATLKHELGDLDKVKRIVKVVGFVNCVDGFTAQPQVINGASDTLGKIFGERGVHSRSAVGTNALPLGVAVEVECIVEVEDN 170 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig949.20817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig949.20817.1 >prot_F-serratus_M_contig949.20817.1 ID=prot_F-serratus_M_contig949.20817.1|Name=mRNA_F-serratus_M_contig949.20817.1|organism=Fucus serratus male|type=polypeptide|length=190bp MFRRVATVAGRITARGVHTEAKLQQMGIELPTPKAPLGNFVMSVRTGNLIback to top mRNA from alignment at F-serratus_M_contig949:16524..26045+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig949.20817.1 ID=mRNA_F-serratus_M_contig949.20817.1|Name=mRNA_F-serratus_M_contig949.20817.1|organism=Fucus serratus male|type=mRNA|length=9522bp|location=Sequence derived from alignment at F-serratus_M_contig949:16524..26045+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig949:16524..26045+ >mRNA_F-serratus_M_contig949.20817.1 ID=mRNA_F-serratus_M_contig949.20817.1|Name=mRNA_F-serratus_M_contig949.20817.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig949:16524..26045+ (Fucus serratus male)back to top |