mRNA_F-serratus_M_contig948.20814.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 99.8 bits (247), Expect = 3.470e-22 Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 1 Query: 4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318 ++K G DG+VEKYK RLVAQGF QV+G+ Y E ++P + SIR+LLA A D E+ D + AFL +++EEI++++P + AV RL KA+YGL QA Sbjct: 1044 VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 93.2 bits (230), Expect = 6.760e-20 Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1 Query: 4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 318 +YK DG +E+YK RLVAQGF Q++G+ Y+E +SP S+R LA V AK EL D AFL D++EE+++++PE F+ V +L K++YGL QA Sbjct: 599 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 704
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 91.3 bits (225), Expect = 3.040e-19 Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 318 +YK DG +E+YK RLVAQGF Q++G+ Y+E +SP S+R LA AK EL D AFL D++EE+++++PE F+ V +L K++YGL QA Sbjct: 130 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 235
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 91.3 bits (225), Expect = 3.230e-19 Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 318 +YK DG +E+YK RLVAQGF Q++G+ Y+E +SP S+R LA AK EL D AFL D++EE+++++PE F+ V +L K++YGL QA Sbjct: 853 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 958
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 90.1 bits (222), Expect = 6.780e-19 Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 22 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318 G +GK+EKYK RLVAQGF QVKG+ Y E ++P SIR LL+ A D E+ D + AFL D+DEEI+++ P G V +L K++Y L QA Sbjct: 49 GPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQA 147
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A2R6QXJ8_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6QXJ8_9APHY) HSP 1 Score: 87.8 bits (216), Expect = 1.330e-18 Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 1 Query: 22 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318 G + ++ KYK RLVA+GF Q+KG+ Y E ++P SIR LLA A D E+ D + AFL D+++EI+++ P F+ G V +LNK++YGL QA Sbjct: 49 GPNREILKYKARLVARGFTQIKGIDYNETFAPVSKFTSIRSLLALTAHHDLEIHQMDVKSAFLNGDLNKEIYMQCPPGFEAKDGKVWKLNKSLYGLKQA 147
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI) HSP 1 Score: 88.6 bits (218), Expect = 2.840e-18 Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 22 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318 G DG VE+YK RLVAQGF QV+G+ Y E ++P ASIR +L A D E+ D + AFL D+DEEI + P+ G V RL KA+YGL QA Sbjct: 985 GADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQGSSCPDGHVWRLRKALYGLRQA 1083
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE) HSP 1 Score: 87.0 bits (214), Expect = 9.570e-18 Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318 +YK + DG ++K+K RLV QGF Q G+ Y++ +SP A+++R LL+ A+K+ +L FD AFL ++EEI+I+ PE F V +LN+++YGL QA Sbjct: 291 VYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQA 395
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 86.3 bits (212), Expect = 1.810e-17 Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 1 Query: 4 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 318 +Y+ DG++ +YK RLVAQGF Q G+ Y E ++P S+R+LLA A ++ EL FD A+L AD+DEEI++ P +++ + RL KA+YGL QA Sbjct: 64 VYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQA 168
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 84.3 bits (207), Expect = 8.730e-17 Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = 1 Query: 19 IGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQ-KFLGAVGRLNKAIYGLVQA 318 +G DGK+++YK RLVAQG+ Q G+ Y+E ++P SIR+L++ A D +L D + AFL ++EE+++++P F+ + V RLNK++YGL Q+ Sbjct: 903 MGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQS 1003 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig948.20814.1 >prot_F-serratus_M_contig948.20814.1 ID=prot_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=polypeptide|length=106bp MLYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLback to top mRNA from alignment at F-serratus_M_contig948:109779..110096+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig948.20814.1 ID=mRNA_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=mRNA|length=318bp|location=Sequence derived from alignment at F-serratus_M_contig948:109779..110096+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig948:109779..110096+ >mRNA_F-serratus_M_contig948.20814.1 ID=mRNA_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig948:109779..110096+ (Fucus serratus male)back to top |