prot_F-serratus_M_contig948.20814.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig948.20814.1
Unique Nameprot_F-serratus_M_contig948.20814.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length106
Homology
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 99.8 bits (247), Expect = 3.470e-22
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 0
Query:    2 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 106
            ++K   G DG+VEKYK RLVAQGF QV+G+ Y E ++P   + SIR+LLA  A  D E+   D + AFL  +++EEI++++P   +    AV RL KA+YGL QA
Sbjct: 1044 VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 98.2 bits (243), Expect = 1.200e-21
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 0
Query:    8 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 106
            G DGK++KYK RLVA+GF QV+GV Y + ++P    ASIRMLLA  A  D E+   D + AFL  D++EEI +E P  FQ+    V RL K++YGL QA
Sbjct: 1019 GPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQDKAHVWRLQKSLYGLKQA 1117          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 6.760e-20
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 0
Query:    2 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 106
            +YK     DG +E+YK RLVAQGF Q++G+ Y+E +SP     S+R  LA V AK  EL   D   AFL  D++EE+++++PE F+      V +L K++YGL QA
Sbjct:  599 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 704          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 91.3 bits (225), Expect = 3.040e-19
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 0
Query:    2 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 106
            +YK     DG +E+YK RLVAQGF Q++G+ Y+E +SP     S+R  LA   AK  EL   D   AFL  D++EE+++++PE F+      V +L K++YGL QA
Sbjct:  130 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 235          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 91.3 bits (225), Expect = 3.230e-19
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = 0
Query:    2 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKF-LGAVGRLNKAIYGLVQA 106
            +YK     DG +E+YK RLVAQGF Q++G+ Y+E +SP     S+R  LA   AK  EL   D   AFL  D++EE+++++PE F+      V +L K++YGL QA
Sbjct:  853 IYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 958          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 6.780e-19
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 0
Query:    8 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 106
            G +GK+EKYK RLVAQGF QVKG+ Y E ++P     SIR LL+  A  D E+   D + AFL  D+DEEI+++ P       G V +L K++Y L QA
Sbjct:   49 GPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQA 147          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A2R6QXJ8_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6QXJ8_9APHY)

HSP 1 Score: 87.8 bits (216), Expect = 1.330e-18
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0
Query:    8 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 106
            G + ++ KYK RLVA+GF Q+KG+ Y E ++P     SIR LLA  A  D E+   D + AFL  D+++EI+++ P  F+   G V +LNK++YGL QA
Sbjct:   49 GPNREILKYKARLVARGFTQIKGIDYNETFAPVSKFTSIRSLLALTAHHDLEIHQMDVKSAFLNGDLNKEIYMQCPPGFEAKDGKVWKLNKSLYGLKQA 147          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 88.6 bits (218), Expect = 2.840e-18
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 0
Query:    8 GQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 106
            G DG VE+YK RLVAQGF QV+G+ Y E ++P    ASIR +L   A  D E+   D + AFL  D+DEEI +  P+      G V RL KA+YGL QA
Sbjct:  985 GADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQGSSCPDGHVWRLRKALYGLRQA 1083          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A164J190_9CRUS (Putative Copia protein (Gag-int-pol protein) (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164J190_9CRUS)

HSP 1 Score: 85.1 bits (209), Expect = 6.160e-18
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0
Query:    2 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFL--GAVGRLNKAIYGLVQA 106
            +YK     DGK+E++K RLVA+GF Q +G+ Y E Y+P     S+RM+++  AAK+ E+   D + AFL  D+ EE+++E PE F+       V RL K+IYGL QA
Sbjct:   11 VYKVKYSTDGKIERFKARLVAKGFSQKEGIDYSETYAPVVRHESLRMVISIAAAKNLEILQLDVKTAFLHGDLKEELYMEQPEGFEDTSRPSDVCRLLKSIYGLKQA 117          
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 87.0 bits (214), Expect = 9.570e-18
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 0
Query:    2 LYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLLATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAIYGLVQA 106
            +YK  +  DG ++K+K RLV QGF Q  G+ Y++ +SP   A+++R LL+  A+K+ +L  FD   AFL   ++EEI+I+ PE F      V +LN+++YGL QA
Sbjct:  291 VYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQA 395          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig948.20814.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.470e-2247.62Integrase catalytic domain-containing protein (Fra... [more]
A0A060SSE0_PYCCI1.200e-2151.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A438E4T4_VITVI6.760e-2044.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI3.040e-1943.40Retrovirus-related Pol polyprotein from transposon... [more]
A5BCC7_VITVI3.230e-1943.40Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A2R6NNP3_9APHY6.780e-1947.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6QXJ8_9APHY1.330e-1844.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SUY4_PYCCI2.840e-1849.49Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A164J190_9CRUS6.160e-1843.93Putative Copia protein (Gag-int-pol protein) (Frag... [more]
A0A146LHR9_LYGHE9.570e-1841.90Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 10..106
e-value: 6.6E-22
score: 78.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..105
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig948contigF-serratus_M_contig948:109779..110096 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig948.20814.1mRNA_F-serratus_M_contig948.20814.1Fucus serratus malemRNAF-serratus_M_contig948 109779..110096 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig948.20814.1 ID=prot_F-serratus_M_contig948.20814.1|Name=mRNA_F-serratus_M_contig948.20814.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MLYKRIIGQDGKVEKYKCRLVAQGFWQVKGVHYKEKYSPAPSAASIRMLL
ATVAAKDGELRHFDAEQAFLKADIDEEIHIEIPEEFQKFLGAVGRLNKAI
YGLVQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like