mRNA_F-serratus_M_contig942.20789.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig942.20789.1
Unique NamemRNA_F-serratus_M_contig942.20789.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.660e-54
Identity = 100/155 (64.52%), Postives = 115/155 (74.19%), Query Frame = -2
Query:   10 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXG--QRGKPPLPSSMVDPDSLRPAAVKCRQ 468
            QL+M  EV KI KHAPQRWLSLVRVMERIIRLWHVLR+VYA+ G EFPLDK +NKD+ILQLYSLL+PLAAITRDGQYGAVPM+AE+HMAFA LK   LDP  PL+V+D+P  P+                 GK PLP   V+P +LRP A K R+
Sbjct:  399 QLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAVPMSAEMHMAFAELKQEGLDPTGPLKVFDIPPTPDSPAALQSDEELPVTVNTGKKPLPHKTVEPAALRPVATKTRE 553          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 4.780e-44
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = -2
Query:  187 LEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLK 465
            LEML E+ KI+KHAPQRWLSLV VMERIIRLWHVLR+VYA+ G+EFPLDK NN+DDILQLYSLLQPL+AITRDGQYG  PMTAE+H+AFA LK
Sbjct:  381 LEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQYGNAPMTAEMHLAFAQLK 473          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 5.290e-43
Identity = 86/155 (55.48%), Postives = 104/155 (67.10%), Query Frame = -2
Query:    4 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPPLPSSMVDPDSLRPAAVKCRQEM 468
            Q++ML E+FK+ KHAPQRWLSL R +ER IRLWHVLR++Y+D G  FPL++ + KD ILQLYSLLQPL++ITRDGQYG  PM A+I M F  L T VLDP K L+V+ VP                GQ+ KP LP  MV P+ L  A  K R EM
Sbjct:  416 QVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLKVFQVPPI------GEDGLPDRGQQKKP-LPFKMVPPEQLHAAVEKTRVEM 563          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.080e-43
Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = -2
Query:    4 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPP-------LPSSMVDPDSLRPAAVKCRQEM 468
            Q+++L +V KI   APQRWL+ VR +ER+IRLWHVLR++Y+DAG  FPL++ +NK+ ILQL+SLLQ L+++TRDGQYG  PM A++ M F  LK  VLDP KPL+V+D+P                GQ G P        LP  MV+PD L P A K R ++
Sbjct:  132 QVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLKVFDIPPL--------------GQDGLPDREEQKKALPHKMVEPDDLHPVAKKARSKL 279          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.590e-41
Identity = 81/160 (50.62%), Postives = 103/160 (64.38%), Query Frame = -2
Query:    4 EMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKP-------PLPSSMVDPDSLRPAAVKCRQEM 462
            E+L EV K+ KHAPQRWLS+VR MERIIRLWH LR++Y+D G  FPL++ +NK+ +LQLYSLL+PL  ITRDGQYG  PM A+I+M    LK  +L+ EK L+VY+ P                G+ G P       PLP  MV   +L PAA K R+E+
Sbjct:   73 ELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGMLNLEKELKVYETPRV--------------GENGLPDREEQNKPLPHKMVAHGNLHPAAKKAREEL 218          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.810e-40
Identity = 77/155 (49.68%), Postives = 101/155 (65.16%), Query Frame = -2
Query:    4 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPPLPSSMVDPDSLRPAAVKCRQEM 468
            Q+++L EV  I   APQRWL+LVR MER+IRLW V+R++Y+DAG  FPL++ +NKD I QLYSLLQPL+++TRDGQYG +PM A+I+M F  LK  VL+    L+V+D+P                 +  K PLP  MV  D L P A K R E+
Sbjct:  163 QVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDR-------EEQKKPLPHKMVAHDELHPVAQKARNEL 310          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 6.150e-40
Identity = 75/150 (50.00%), Postives = 99/150 (66.00%), Query Frame = -2
Query:   19 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPPLPSSMVDPDSLRPAAVK 468
            Q+++L EV KI   AP+RWL+LVR +ER+IRLWHVLR++Y+D G  FPL++ +NKD ILQLYSLLQP +++TRDGQYG  PM A+I+M    LK  VLDP + L+V+D+P                 +  K  LP  +V  D LRP A K
Sbjct:  183 QVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELKVFDIPPLGEDSLPDR-------EEQKKALPHKVVAHDDLRPVAQK 325          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.240e-39
Identity = 83/153 (54.25%), Postives = 99/153 (64.71%), Query Frame = -2
Query:   10 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPPLPSSMVDPDSLRPAAVKCRQ 468
            Q+EML E  KIS+HAPQRWLSLVRV+ERIIRLWHVLR+                      L+SLLQPLA ITRDGQYGAVPMTAE+HMAFA LK  +LDP++PL+V+D+PA P               + K  LP  MV+P +LRP A K R+
Sbjct:  204 QMEMLGETLKISRHAPQRWLSLVRVIERIIRLWHVLRK----------------------LFSLLQPLAVITRDGQYGAVPMTAEMHMAFAELKKELLDPDEPLKVFDIPATPVSPEAEQADEEVP--KKKKSLPHKMVEPAALRPVATKTRE 332          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.840e-39
Identity = 75/155 (48.39%), Postives = 99/155 (63.87%), Query Frame = -2
Query:    4 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPPLPSSMVDPDSLRPAAVKCRQEM 468
            Q+++L EV KI   APQRWL+LVR +ER++RLW VLR++Y+D G  FPL++ ++KD ILQLYSLLQP  ++TRDGQYG  PM A+I+M F  LK  VL P + L+V+DVP                 +  K  LP  MV  D L P A K R ++
Sbjct:   79 QVDVLGEVLKIPDQAPQRWLTLVRTLERVVRLWRVLRKLYSDTGKTFPLEEGDDKDCILQLYSLLQPFPSVTRDGQYGGAPMLADIYMKFGMLKMRVLHPSEELKVFDVPPLGEDGLP---------EEQKKALPQKMVAHDDLHPVAQKARNKL 224          
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.230e-39
Identity = 77/155 (49.68%), Postives = 101/155 (65.16%), Query Frame = -2
Query:    4 QLEMLQEVFKISKHAPQRWLSLVRVMERIIRLWHVLRRVYADAGDEFPLDKDNNKDDILQLYSLLQPLAAITRDGQYGAVPMTAEIHMAFAHLKTTVLDPEKPLRVYDVPAAPNXXXXXXXXXXXXGQRGKPPLPSSMVDPDSLRPAAVKCRQEM 468
            Q+++L EV  I   APQRWL+LVR MER+IRLW V+R++Y+DAG  FPL++ +NKD I QLYSLLQPL+++TRDGQYG +PM A+I+M F  LK  VL+    L+V+D+P                 +  K PLP  MV  D L P A K R E+
Sbjct:  292 QVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIPPLGEDGLPDR-------EEQKKPLPHKMVAHDELHPVAQKARNEL 439          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig942.20789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L1G0_9PHAE2.660e-5464.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE4.780e-4481.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE5.290e-4355.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEE6_9PHAE8.080e-4349.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE3.590e-4150.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ66_9PHAE2.810e-4049.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE6.150e-4050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE1.240e-3954.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGB7_9PHAE1.840e-3948.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE2.230e-3949.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig942contigF-serratus_M_contig942:281837..282305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932699.0329883-CDS-F-serratus_M_contig942:281836..2822711622932699.0329883-CDS-F-serratus_M_contig942:281836..282271Fucus serratus maleCDSF-serratus_M_contig942 281837..282271 +
1690964428.9999146-CDS-F-serratus_M_contig942:281836..2822711690964428.9999146-CDS-F-serratus_M_contig942:281836..282271Fucus serratus maleCDSF-serratus_M_contig942 281837..282271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932699.0502324-UTR-F-serratus_M_contig942:282271..2823051622932699.0502324-UTR-F-serratus_M_contig942:282271..282305Fucus serratus maleUTRF-serratus_M_contig942 282272..282305 +
1690964429.0093033-UTR-F-serratus_M_contig942:282271..2823051690964429.0093033-UTR-F-serratus_M_contig942:282271..282305Fucus serratus maleUTRF-serratus_M_contig942 282272..282305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig942.20789.1prot_F-serratus_M_contig942.20789.1Fucus serratus malepolypeptideF-serratus_M_contig942 281837..282271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig942.20789.1

>prot_F-serratus_M_contig942.20789.1 ID=prot_F-serratus_M_contig942.20789.1|Name=mRNA_F-serratus_M_contig942.20789.1|organism=Fucus serratus male|type=polypeptide|length=145bp
AHFLAALDGGGTQAIRVHHRGRQRWLAPLPLVRLRGLLRFRGIRRRGDVV
DPQRLLGVEHGRLEVCERHVNLCRHWHGAVLPIPRYGGERLKQRVELEDV
VLVVVLVEWELVAGVGVDPPEHVPQTDDAFHDANETQPPLGRVL*
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mRNA from alignment at F-serratus_M_contig942:281837..282305+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig942.20789.1 ID=mRNA_F-serratus_M_contig942.20789.1|Name=mRNA_F-serratus_M_contig942.20789.1|organism=Fucus serratus male|type=mRNA|length=469bp|location=Sequence derived from alignment at F-serratus_M_contig942:281837..282305+ (Fucus serratus male)
GCTCATTTCTTGGCGGCACTTGACGGCGGCGGGACGCAAGCTATCCGGGT CCACCATCGAGGACGGCAGCGGTGGCTTGCCCCTCTGCCCCTCGTGCGCC TGCGCGGCCTGCTCCGCTTCCGGGGAATTCGGCGCCGCGGGGACGTCGTA GACCCGCAGCGGCTTCTCGGGGTCGAGCACGGTCGTCTTGAGGTGTGCGA ACGCCATGTGAATCTCTGCCGTCATTGGCACGGCGCCGTACTGCCCATCC CGCGTTATGGCGGCGAGAGGCTGAAGCAGCGAGTAGAGCTGGAGGATGTC GTCCTTGTTGTTGTCCTTGTCGAGTGGGAACTCGTCGCCGGCGTCGGCGT AGACCCTCCTGAGCACGTGCCACAGACGGATGATGCGTTCCATGACGCGA ACGAGACTCAGCCACCGCTGGGGCGCGTGCTTTGAGATCTTGAAGACCTC TTGCAACATCTCCAGCTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig942:281837..282305+

>mRNA_F-serratus_M_contig942.20789.1 ID=mRNA_F-serratus_M_contig942.20789.1|Name=mRNA_F-serratus_M_contig942.20789.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig942:281837..282305+ (Fucus serratus male)
GCTCATTTCTTGGCGGCACTTGACGGCGGCGGGACGCAAGCTATCCGGGT
CCACCATCGAGGACGGCAGCGGTGGCTTGCCCCTCTGCCCCTCGTGCGCC
TGCGCGGCCTGCTCCGCTTCCGGGGAATTCGGCGCCGCGGGGACGTCGTA
GACCCGCAGCGGCTTCTCGGGGTCGAGCACGGTCGTCTTGAGGTGTGCGA
ACGCCATGTGAATCTCTGCCGTCATTGGCACGGCGCCGTACTGCCCATCC
CGCGTTATGGCGGCGAGAGGCTGAAGCAGCGAGTAGAGCTGGAGGATGTC
GTCCTTGTTGTTGTCCTTGTCGAGTGGGAACTCGTCGCCGGCGTCGGCGT
AGACCCTCCTGAGCACGTGCCACAGACGGATGATGCGTTCCATGACGCGA
ACGAGACTCAGCCACCGCTGGGGCGCGTGCTTTGAGCTCATTTCTTGGCG
GCACTTGACGGCGGCGGGACGCAAGCTATCCGGGTCCACCATCGAGGACG
GCAGCGGTGGCTTGCCCCTCTGCCCCTCGTGCGCCTGCGCGGCCTGCTCC
GCTTCCGGGGAATTCGGCGCCGCGGGGACGTCGTAGACCCGCAGCGGCTT
CTCGGGGTCGAGCACGGTCGTCTTGAGGTGTGCGAACGCCATGTGAATCT
CTGCCGTCATTGGCACGGCGCCGTACTGCCCATCCCGCGTTATGGCGGCG
AGAGGCTGAAGCAGCGAGTAGAGCTGGAGGATGTCGTCCTTGTTGTTGTC
CTTGTCGAGTGGGAACTCGTCGCCGGCGTCGGCGTAGACCCTCCTGAGCA
CGTGCCACAGACGGATGATGCGTTCCATGACGCGAACGAGACTCAGCCAC
CGCTGGGGCGCGTGCTTTGA
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