mRNA_F-serratus_M_contig908.20488.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig908.20488.1
Unique NamemRNA_F-serratus_M_contig908.20488.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.710e-39
Identity = 109/291 (37.46%), Postives = 158/291 (54.30%), Query Frame = 1
Query:    1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            A + +KF++KDMG A + +G  I    + R L   Q    ESI+K+F  +  K    P   GV  L+KADEP+  E+K +MK  PYR  VG+LM+ A  TR DI+ A                        YLL TK+ GI Y G   G  +E Y+D+D+    D RRSVSG +LM  +  + W S  Q+     + E E +ALS+ VK  +++RR  + +    +VGA  ++EDN GA+  LA N     RTK ID++ H VR+ + + +V++ YV ++ Q ADF+TK L
Sbjct:  619 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAM-ALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGL 905          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.600e-38
Identity = 107/291 (36.77%), Postives = 156/291 (53.61%), Query Frame = 1
Query:    1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            A + +KF++KDMG A + +G  I    + R L   Q    ESI+K+F  +  K    P   GV  L+KADEP+  E+K +MK  PYR  VG+LM+ +  TR DI+ A                        YLL TK+ GI Y G   G  +E Y+D+D+    D RRSVSG +LM     + W S  Q+     + E E +ALS+ VK  +++RR  + +    +VGA  ++EDN GA+  LA N      TK ID++ H +RD + + +V++ YV ++ Q ADF+TK L
Sbjct:  353 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAM-ALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 639          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 149 bits (376), Expect = 3.710e-37
Identity = 106/291 (36.43%), Postives = 155/291 (53.26%), Query Frame = 1
Query:    1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            A + +KF++KDMG A + +G  I    + R L   Q    ESI+K+   +  K    P   GV  L+KADEP+  E+K +MK  PYR  VG+LM+ +  TR DI+ A                        YLL TK+ GI Y G   G  +E Y+D+D+    D RRSVSG +LM     + W S  Q+     + E E +ALS+ VK  +++RR  + +    +VGA  ++EDN GA+  LA N      TK ID++ H +RD + + +V++ YV ++ Q ADF+TK L
Sbjct:  597 AGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAM-ALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 883          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.990e-34
Identity = 100/285 (35.09%), Postives = 148/285 (51.93%), Query Frame = 1
Query:   19 FKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKI--PAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            FK KD+G+  + +G  I+R R AR+L  +Q   +++I+KRF+++  A +  P A G   L+K   P + E   +M K P+R+AVG+LM+    +R DIA A                        YL  T+++G+ + G    + ++ +TDSD+ AC D RRSVSG V M  +  I+W SR Q +    T E E VAL+   + VLFLR  Q   E         + EDN   I  +A N     R K IDV+ H +R+    ++V + YV+S+   AD LTK L
Sbjct:  380 FKAKDLGEVSFILGLKISRDRAARKLWINQQSNVDTILKRFNMEHGAGVATPTAAGK-KLTKLQSPTSEETMSKMLKKPFRQAVGSLMYQMIGSRPDIAFAIQDVSRYMANYGEAHWEAVKRCLRYLKATRDYGLEFSGDA--VVLKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVALAHCTREVLFLR--QLLKELGYEQHGTVVKEDNQACI-AIAENPSHHARVKHIDVRYHFIREHVQLKEVELQYVKSKENVADTLTKGL 658          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: UPI0019549DCA (uncharacterized protein LOC120413002 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI0019549DCA)

HSP 1 Score: 139 bits (350), Expect = 1.220e-33
Identity = 101/290 (34.83%), Postives = 149/290 (51.38%), Query Frame = 1
Query:    1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAALGVPTLSKADE-PRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            A+L ++FK+KD+G A+Y +G  ++R +   E+  DQ   +E+I+ RF +     +   + V      D  P   +EKE MK  PY+EAVG LM+ A  TR DI  A                        YL  T ++ +TY   G    +E ++D+D+ A L+ R+S++G V      A+SW  + Q+     T E E +ALS  V+  L+ RR +  +E      A+ +  DN  AI  +A N     RTK ID++ H +RDA +  +V V YVRSE Q AD LTKPL
Sbjct: 1091 AQLSREFKMKDIGPAKYVLGIRVSRSKD--EIALDQEKYVEAILSRFQMTDCKPVSTPMNVSEKLTRDACPSTDQEKERMKSVPYQEAVGCLMYLAQSTRPDICYAVNILSRFNSNPGEKHWCGVKHLFRYLRGTSKFRLTYTKGGASK-IEGFSDADWAADLEDRKSITGYVFTAQGAAVSWSCKRQQTVALSTCEAEYMALSAAVQEALWWRRLRGRIESEE---AITIHCDNQSAI-AVARNGGYHPRTKHIDIRHHFIRDALEKGEVVVDYVRSEEQTADGLTKPL 1373          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL)

HSP 1 Score: 133 bits (334), Expect = 1.940e-33
Identity = 98/290 (33.79%), Postives = 147/290 (50.69%), Query Frame = 1
Query:    7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAAL-GVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRA--QEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            L  +F++KD+G A+Y +G  I+R ++  EL  DQ   +E ++ RF++     +         L K+  P++ +E EEMKK PY+EAVG L + A  TR DI+ A                        YL  T    + +  +G G  +  YTD+D+G  +D+RRS +G V M   GAISW  + Q      + E E +ALS  ++  L+ R    Q F E  +++     F DN  AI+ +A N     RTK +D++ H V DA D+  V + YV ++ Q AD  TKPL
Sbjct:   28 LCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCHPVSTPFESSERLDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRILRYLKGTINNRLLFNKRGNGEIIG-YTDADWGGDVDSRRSTTGYVFMFQGGAISWNVKRQPTVALSSCEAEYMALSRTIQEALWWRNMLKQIFGETQIKI-----FCDNQSAIS-IAKNGSYNPRTKHVDIRYHFVHDAIDSGSVAINYVNTKDQAADGFTKPL 310          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 132 bits (332), Expect = 6.660e-32
Identity = 94/289 (32.53%), Postives = 151/289 (52.25%), Query Frame = 1
Query:    7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKI--PAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            +  +F++K++G  ++ +G  I   R  R L  +Q   ++++V+RF+ +    +  P    +  LSKAD PR+ ++K EM K PYR  +G L + A  TR DIA A                        YL  T+++GI+YGG        V+ D+D+G  +D RRSVSG V+M   G I + ++ Q      + E E +ALS   + V+++R     +  +++   + ++EDN GAI  LA N     RTK ID++ H VRD      ++++YV ++ Q AD LTK L
Sbjct:  209 IAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSL-KLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKK-PIQVWEDNQGAI-ALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSL 494          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A1W7R6K6_AEDAL (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=4 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6K6_AEDAL)

HSP 1 Score: 133 bits (334), Expect = 1.640e-31
Identity = 98/290 (33.79%), Postives = 146/290 (50.34%), Query Frame = 1
Query:    7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAAL-GVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRA--QEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            L  +F++KD+G A+Y +G  I+R ++  EL  DQ   +E ++ RF++     +         L K+  P++  E EEMKK PY+EAVG L + A  TR DI+ A                        YL  T    + +  +G G  +  YTD+D+G  +D+RRS +G V M   GAISW  + Q      + E E +ALS  ++  L+ R    Q F E  +++     F DN  AI+ +A N     RTK +D++ H V DA D+  V + YV ++ Q AD  TKPL
Sbjct: 1066 LCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLADCHPVSTPFESSERLDKSMTPKSQNEMEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRIFRYLKGTINNRLLFNKRGNGEIIG-YTDADWGGDVDSRRSTTGYVFMFQGGAISWNVKRQPTVALSSCEAEYMALSRTIQEALWWRNMLKQIFGETQIKI-----FCDNQSAIS-IAKNGSYNPRTKHVDIRYHFVHDAIDSGSVAINYVNTKDQAADGFTKPL 1348          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 129 bits (324), Expect = 5.430e-31
Identity = 97/290 (33.45%), Postives = 146/290 (50.34%), Query Frame = 1
Query:    7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQ-EFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            +G+K+ L D+G+  + +G  + R R+AR L   QH  ++SI+ RF+    K + IP    +  L+K+  P +  +   M+K PYREA+G+LM+ A  TR DI+ A                        YLL TK   + YGG   GL  E Y D+D GA  + R +++G V +   GA+SW S+ QE+ T  T E E VA +   K  +++RR   E   P    G   ++ D+  AI  L  +     RTK ID++ H +R   +A  +R+ Y  +    AD LTK L
Sbjct:  165 IGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNL-QLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGL--EGYVDAD-GASQEHRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLD--GPTTLYSDSQSAI-ALTKDGQYHARTKHIDIRYHFIRYVVEAGTLRLIYCPTNDMTADTLTKAL 447          
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI)

HSP 1 Score: 131 bits (329), Expect = 7.250e-31
Identity = 94/291 (32.30%), Postives = 148/291 (50.86%), Query Frame = 1
Query:    1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKH--ATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
            A L +KF ++D+G AEY++G  +TR R+AR +K  Q    + ++ R+ ++       A   P LS  ++ +   +  +  K+PY E VG+L++ +  TR DIA A                        YL  T E G+T+GG    L    Y D+D+   +D+RRS +G V +   GA SW SR+Q    + T+E E ++ +   K  L+L++    +E  +  G V ++ DN GA+  L   KH  A+ RTK IDV  H VR+     ++R  Y+ ++   AD  TKPL
Sbjct:  775 AHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGLE----AAKARSTP-LSSGEKLQREGDPLDTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMAGPTEEHWRAALGVARYLSGTAELGVTFGGSAEPLVG--YADADYAGDVDSRRSTTGYVFLVYGGAASWSSRLQPTVAASTVEAEYMSAASAAKEALWLKKLCGDLE--LPGGVVQIYGDNQGALQLL---KHPIASQRTKHIDVLHHFVRERVARGELRYEYIPTKQMVADVFTKPL 1053          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3YGI7_9STRA2.710e-3937.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA2.600e-3836.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0QQ26_9STRA3.710e-3736.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A225VGP7_9STRA3.990e-3435.09Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
UPI0019549DCA1.220e-3334.83uncharacterized protein LOC120413002 n=1 Tax=Culex... [more]
A0A182H216_AEDAL1.940e-3333.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL6.660e-3232.53Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A1W7R6K6_AEDAL1.640e-3133.79Putative retrovirus-related pol polyprotein from t... [more]
A0A4S4K468_9APHY5.430e-3133.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1IVX6_KLENI7.250e-3132.30Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig908contigF-serratus_M_contig908:50215..51081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score93.6
Seed ortholog evalue9.3e-17
Seed eggNOG ortholog221103.XP_007845407.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs22D21@155619,39QKZ@33154,3Q6Q9@4751,3V7VH@5204,3WA55@5338,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Exons2
Model size795
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig908.20488.1prot_F-serratus_M_contig908.20488.1Fucus serratus malepolypeptideF-serratus_M_contig908 50485..51048 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932642.7096987-UTR-F-serratus_M_contig908:50214..504841622932642.7096987-UTR-F-serratus_M_contig908:50214..50484Fucus serratus maleUTRF-serratus_M_contig908 50215..50484 -
1690964400.6259215-UTR-F-serratus_M_contig908:50214..504841690964400.6259215-UTR-F-serratus_M_contig908:50214..50484Fucus serratus maleUTRF-serratus_M_contig908 50215..50484 -
1622932642.767125-UTR-F-serratus_M_contig908:51048..510811622932642.767125-UTR-F-serratus_M_contig908:51048..51081Fucus serratus maleUTRF-serratus_M_contig908 51049..51081 -
1690964400.6711671-UTR-F-serratus_M_contig908:51048..510811690964400.6711671-UTR-F-serratus_M_contig908:51048..51081Fucus serratus maleUTRF-serratus_M_contig908 51049..51081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932642.727365-CDS-F-serratus_M_contig908:50484..506941622932642.727365-CDS-F-serratus_M_contig908:50484..50694Fucus serratus maleCDSF-serratus_M_contig908 50485..50694 -
1690964400.63954-CDS-F-serratus_M_contig908:50484..506941690964400.63954-CDS-F-serratus_M_contig908:50484..50694Fucus serratus maleCDSF-serratus_M_contig908 50485..50694 -
1622932642.7453475-CDS-F-serratus_M_contig908:50766..510481622932642.7453475-CDS-F-serratus_M_contig908:50766..51048Fucus serratus maleCDSF-serratus_M_contig908 50767..51048 -
1690964400.656203-CDS-F-serratus_M_contig908:50766..510481690964400.656203-CDS-F-serratus_M_contig908:50766..51048Fucus serratus maleCDSF-serratus_M_contig908 50767..51048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig908.20488.1

>prot_F-serratus_M_contig908.20488.1 ID=prot_F-serratus_M_contig908.20488.1|Name=mRNA_F-serratus_M_contig908.20488.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAALGV
PTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACAYLLHTK
EWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSR
MQEVTTSGTLEVE*
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mRNA from alignment at F-serratus_M_contig908:50215..51081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig908.20488.1 ID=mRNA_F-serratus_M_contig908.20488.1|Name=mRNA_F-serratus_M_contig908.20488.1|organism=Fucus serratus male|type=mRNA|length=867bp|location=Sequence derived from alignment at F-serratus_M_contig908:50215..51081- (Fucus serratus male)
GCCGAGCTTGGGCAGAAGTTTAAGTTGAAGGACATGGGGGACGCTGAGTA CTACATGGGTTGTCACATCACCAGGATCCGCAAGGCGCGCGAATTAAAGT TCGACCAACACCTGTGCATGGAGTCAATTGTAAAGAGATTTGACGTCAAG AAGAAAGCTAAGATACCGGCTGCGTTGGGGGTGCCGACGCTCTCAAAGGC GGATGAACCGCGGAACCCAGAGGAGAAGGAAGAAATGAAGAAGTTCCCGT ACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCAACGATGACACGGTCG GATATTGCGTGCGCCGTACGCGCCGTGGCCAGGTTCTGCGAAAACCCTGG GCCGGCACACAAGAAGGCAGCGATGAAGATCCTCCAGTATCTCCTTCACA CTAAAGAATGGGGGATTACATACGGTGGACAAGGCTGTGGACTTTGCATG GAAGTATATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGACGGTC GGTTTCAGGTGCGGTGTTGATGCCGACCAAGGGAGCGATCAGTTGGCCCT CGAGGATGCAAGAAGTAACAACATCAGGTACCTTGGAGGTAGAGTAAGTT GCCTTATCAGAGGTAGTAAAATACGTACTATTTTTGAGACGGGCGCAGGA GTTCATGGAACCATCGATGAGGGTCGGTGCAGTAAATATGTTCGAAGATA ATGATGGGGCCATCAACAAGCTGGCCCCAAACAAGCATGCTACCATTAGG ACTAAGCGCATTGATGTGAAACGTCATCTAGTAAGGGACGCGTCTGACGC GCAAAAGGTAAGAGTAGCGTACGTGAGGTCGGAATATCAGCACGCGGATT TTCTCACAAAACCGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig908:50215..51081-

>mRNA_F-serratus_M_contig908.20488.1 ID=mRNA_F-serratus_M_contig908.20488.1|Name=mRNA_F-serratus_M_contig908.20488.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig908:50215..51081- (Fucus serratus male)
ATGGGGGACGCTGAGTACTACATGGGTTGTCACATCACCAGGATCCGCAA
GGCGCGCGAATTAAAGTTCGACCAACACCTGTGCATGGAGTCAATTGTAA
AGAGATTTGACGTCAAGAAGAAAGCTAAGATACCGGCTGCGTTGGGGGTG
CCGACGCTCTCAAAGGCGGATGAACCGCGGAACCCAGAGGAGAAGGAAGA
AATGAAGAAGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGG
CAACGATGACACGGTCGGATATTGCGTGCGCCATGGGGGACGCTGAGTAC
TACATGGGTTGTCACATCACCAGGATCCGCAAGGCGCGCGAATTAAAGTT
CGACCAACACCTGTGCATGGAGTCAATTGTAAAGAGATTTGACGTCAAGA
AGAAAGCTAAGATACCGGCTGCGTTGGGGGTGCCGACGCTCTCAAAGGCG
GATGAACCGCGGAACCCAGAGGAGAAGGAAGAAATGAAGAAGTTCCCGTA
CCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCAACGATGACACGGTCGG
ATATTGCGTGCGCCTATCTCCTTCACACTAAAGAATGGGGGATTACATAC
GGTGGACAAGGCTGTGGACTTTGCATGGAAGTATATACGGATTCGGATTT
CGGAGCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTTGATGC
CGACCAAGGGAGCGATCAGTTGGCCCTCGAGGATGCAAGAAGTAACAACA
TCAGGTACCTTGGAGGTAGAGTAATATCTCCTTCACACTAAAGAATGGGG
GATTACATACGGTGGACAAGGCTGTGGACTTTGCATGGAAGTATATACGG
ATTCGGATTTCGGAGCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCG
GTGTTGATGCCGACCAAGGGAGCGATCAGTTGGCCCTCGAGGATGCAAGA
AGTAACAACATCAGGTACCTTGGAGGTAGAGTAA
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