mRNA_F-serratus_M_contig908.20488.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.710e-39 Identity = 109/291 (37.46%), Postives = 158/291 (54.30%), Query Frame = 1
Query: 1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
A + +KF++KDMG A + +G I + R L Q ESI+K+F + K P GV L+KADEP+ E+K +MK PYR VG+LM+ A TR DI+ A YLL TK+ GI Y G G +E Y+D+D+ D RRSVSG +LM + + W S Q+ + E E +ALS+ VK +++RR + + +VGA ++EDN GA+ LA N RTK ID++ H VR+ + + +V++ YV ++ Q ADF+TK L
Sbjct: 619 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAM-ALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGL 905
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.600e-38 Identity = 107/291 (36.77%), Postives = 156/291 (53.61%), Query Frame = 1
Query: 1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
A + +KF++KDMG A + +G I + R L Q ESI+K+F + K P GV L+KADEP+ E+K +MK PYR VG+LM+ + TR DI+ A YLL TK+ GI Y G G +E Y+D+D+ D RRSVSG +LM + W S Q+ + E E +ALS+ VK +++RR + + +VGA ++EDN GA+ LA N TK ID++ H +RD + + +V++ YV ++ Q ADF+TK L
Sbjct: 353 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAM-ALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 639
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 149 bits (376), Expect = 3.710e-37 Identity = 106/291 (36.43%), Postives = 155/291 (53.26%), Query Frame = 1
Query: 1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
A + +KF++KDMG A + +G I + R L Q ESI+K+ + K P GV L+KADEP+ E+K +MK PYR VG+LM+ + TR DI+ A YLL TK+ GI Y G G +E Y+D+D+ D RRSVSG +LM + W S Q+ + E E +ALS+ VK +++RR + + +VGA ++EDN GA+ LA N TK ID++ H +RD + + +V++ YV ++ Q ADF+TK L
Sbjct: 597 AGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAM-ALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 883
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA) HSP 1 Score: 140 bits (352), Expect = 3.990e-34 Identity = 100/285 (35.09%), Postives = 148/285 (51.93%), Query Frame = 1
Query: 19 FKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKI--PAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
FK KD+G+ + +G I+R R AR+L +Q +++I+KRF+++ A + P A G L+K P + E +M K P+R+AVG+LM+ +R DIA A YL T+++G+ + G + ++ +TDSD+ AC D RRSVSG V M + I+W SR Q + T E E VAL+ + VLFLR Q E + EDN I +A N R K IDV+ H +R+ ++V + YV+S+ AD LTK L
Sbjct: 380 FKAKDLGEVSFILGLKISRDRAARKLWINQQSNVDTILKRFNMEHGAGVATPTAAGK-KLTKLQSPTSEETMSKMLKKPFRQAVGSLMYQMIGSRPDIAFAIQDVSRYMANYGEAHWEAVKRCLRYLKATRDYGLEFSGDA--VVLKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVALAHCTREVLFLR--QLLKELGYEQHGTVVKEDNQACI-AIAENPSHHARVKHIDVRYHFIREHVQLKEVELQYVKSKENVADTLTKGL 658
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: UPI0019549DCA (uncharacterized protein LOC120413002 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI0019549DCA) HSP 1 Score: 139 bits (350), Expect = 1.220e-33 Identity = 101/290 (34.83%), Postives = 149/290 (51.38%), Query Frame = 1
Query: 1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAALGVPTLSKADE-PRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
A+L ++FK+KD+G A+Y +G ++R + E+ DQ +E+I+ RF + + + V D P +EKE MK PY+EAVG LM+ A TR DI A YL T ++ +TY G +E ++D+D+ A L+ R+S++G V A+SW + Q+ T E E +ALS V+ L+ RR + +E A+ + DN AI +A N RTK ID++ H +RDA + +V V YVRSE Q AD LTKPL
Sbjct: 1091 AQLSREFKMKDIGPAKYVLGIRVSRSKD--EIALDQEKYVEAILSRFQMTDCKPVSTPMNVSEKLTRDACPSTDQEKERMKSVPYQEAVGCLMYLAQSTRPDICYAVNILSRFNSNPGEKHWCGVKHLFRYLRGTSKFRLTYTKGGASK-IEGFSDADWAADLEDRKSITGYVFTAQGAAVSWSCKRQQTVALSTCEAEYMALSAAVQEALWWRRLRGRIESEE---AITIHCDNQSAI-AVARNGGYHPRTKHIDIRHHFIRDALEKGEVVVDYVRSEEQTADGLTKPL 1373
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL) HSP 1 Score: 133 bits (334), Expect = 1.940e-33 Identity = 98/290 (33.79%), Postives = 147/290 (50.69%), Query Frame = 1
Query: 7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAAL-GVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRA--QEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
L +F++KD+G A+Y +G I+R ++ EL DQ +E ++ RF++ + L K+ P++ +E EEMKK PY+EAVG L + A TR DI+ A YL T + + +G G + YTD+D+G +D+RRS +G V M GAISW + Q + E E +ALS ++ L+ R Q F E +++ F DN AI+ +A N RTK +D++ H V DA D+ V + YV ++ Q AD TKPL
Sbjct: 28 LCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCHPVSTPFESSERLDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRILRYLKGTINNRLLFNKRGNGEIIG-YTDADWGGDVDSRRSTTGYVFMFQGGAISWNVKRQPTVALSSCEAEYMALSRTIQEALWWRNMLKQIFGETQIKI-----FCDNQSAIS-IAKNGSYNPRTKHVDIRYHFVHDAIDSGSVAINYVNTKDQAADGFTKPL 310
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 132 bits (332), Expect = 6.660e-32 Identity = 94/289 (32.53%), Postives = 151/289 (52.25%), Query Frame = 1
Query: 7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKI--PAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
+ +F++K++G ++ +G I R R L +Q ++++V+RF+ + + P + LSKAD PR+ ++K EM K PYR +G L + A TR DIA A YL T+++GI+YGG V+ D+D+G +D RRSVSG V+M G I + ++ Q + E E +ALS + V+++R + +++ + ++EDN GAI LA N RTK ID++ H VRD ++++YV ++ Q AD LTK L
Sbjct: 209 IAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSL-KLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKK-PIQVWEDNQGAI-ALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSL 494
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A1W7R6K6_AEDAL (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=4 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6K6_AEDAL) HSP 1 Score: 133 bits (334), Expect = 1.640e-31 Identity = 98/290 (33.79%), Postives = 146/290 (50.34%), Query Frame = 1
Query: 7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAAL-GVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRA--QEFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
L +F++KD+G A+Y +G I+R ++ EL DQ +E ++ RF++ + L K+ P++ E EEMKK PY+EAVG L + A TR DI+ A YL T + + +G G + YTD+D+G +D+RRS +G V M GAISW + Q + E E +ALS ++ L+ R Q F E +++ F DN AI+ +A N RTK +D++ H V DA D+ V + YV ++ Q AD TKPL
Sbjct: 1066 LCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLADCHPVSTPFESSERLDKSMTPKSQNEMEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRIFRYLKGTINNRLLFNKRGNGEIIG-YTDADWGGDVDSRRSTTGYVFMFQGGAISWNVKRQPTVALSSCEAEYMALSRTIQEALWWRNMLKQIFGETQIKI-----FCDNQSAIS-IAKNGSYNPRTKHVDIRYHFVHDAIDSGSVAINYVNTKDQAADGFTKPL 1348
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY) HSP 1 Score: 129 bits (324), Expect = 5.430e-31 Identity = 97/290 (33.45%), Postives = 146/290 (50.34%), Query Frame = 1
Query: 7 LGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVK--KKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQ-EFMEPSMRVGAVNMFEDNDGAINKLAPNKHATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
+G+K+ L D+G+ + +G + R R+AR L QH ++SI+ RF+ K + IP + L+K+ P + + M+K PYREA+G+LM+ A TR DI+ A YLL TK + YGG GL E Y D+D GA + R +++G V + GA+SW S+ QE+ T T E E VA + K +++RR E P G ++ D+ AI L + RTK ID++ H +R +A +R+ Y + AD LTK L
Sbjct: 165 IGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNL-QLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGL--EGYVDAD-GASQEHRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLD--GPTTLYSDSQSAI-ALTKDGQYHARTKHIDIRYHFIRYVVEAGTLRLIYCPTNDMTADTLTKAL 447
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 131 bits (329), Expect = 7.250e-31 Identity = 94/291 (32.30%), Postives = 148/291 (50.86%), Query Frame = 1
Query: 1 AELGQKFKLKDMGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAALGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATMTRSDIACA------------------------YLLHTKEWGITYGGQGCGLCMEVYTDSDFGACLDTRRSVSGAVLMPTKGAISWPSRMQEVTTSGTLEVE*VALSEVVKYVLFLRRAQEFMEPSMRVGAVNMFEDNDGAINKLAPNKH--ATIRTKRIDVKRHLVRDASDAQKVRVAYVRSEYQHADFLTKPL 795
A L +KF ++D+G AEY++G +TR R+AR +K Q + ++ R+ ++ A P LS ++ + + + K+PY E VG+L++ + TR DIA A YL T E G+T+GG L Y D+D+ +D+RRS +G V + GA SW SR+Q + T+E E ++ + K L+L++ +E + G V ++ DN GA+ L KH A+ RTK IDV H VR+ ++R Y+ ++ AD TKPL
Sbjct: 775 AHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGLE----AAKARSTP-LSSGEKLQREGDPLDTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMAGPTEEHWRAALGVARYLSGTAELGVTFGGSAEPLVG--YADADYAGDVDSRRSTTGYVFLVYGGAASWSSRLQPTVAASTVEAEYMSAASAAKEALWLKKLCGDLE--LPGGVVQIYGDNQGALQLL---KHPIASQRTKHIDVLHHFVRERVARGELRYEYIPTKQMVADVFTKPL 1053 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig908.20488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig908.20488.1 >prot_F-serratus_M_contig908.20488.1 ID=prot_F-serratus_M_contig908.20488.1|Name=mRNA_F-serratus_M_contig908.20488.1|organism=Fucus serratus male|type=polypeptide|length=164bp MGDAEYYMGCHITRIRKARELKFDQHLCMESIVKRFDVKKKAKIPAALGVback to top mRNA from alignment at F-serratus_M_contig908:50215..51081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig908.20488.1 ID=mRNA_F-serratus_M_contig908.20488.1|Name=mRNA_F-serratus_M_contig908.20488.1|organism=Fucus serratus male|type=mRNA|length=867bp|location=Sequence derived from alignment at F-serratus_M_contig908:50215..51081- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig908:50215..51081- >mRNA_F-serratus_M_contig908.20488.1 ID=mRNA_F-serratus_M_contig908.20488.1|Name=mRNA_F-serratus_M_contig908.20488.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig908:50215..51081- (Fucus serratus male)back to top |