mRNA_F-serratus_M_contig905.20472.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig905.20472.1
Unique NamemRNA_F-serratus_M_contig905.20472.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: A0A2R4QQ89_9PHAE (Cytochrome c oxidase subunit 3 n=8 Tax=Fucales TaxID=3009 RepID=A0A2R4QQ89_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 6.060e-84
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAV+FTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL
Sbjct:  101 FFAFFWAFFTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVIFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 231
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BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: J9JEF7_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Carpophyllum TaxID=590102 RepID=J9JEF7_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.170e-76
Identity = 114/131 (87.02%), Postives = 124/131 (94.66%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTW+HHAIV G KKEAL GLA+T IFAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGT+FL +CTFRLYL
Sbjct:   24 FFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWSHHAIVGGLKKEALLGLAITIIFAVIFTALQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTLFLSVCTFRLYL 154
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BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: A0A068ACL1_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=Sargassum TaxID=3015 RepID=A0A068ACL1_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.860e-76
Identity = 115/131 (87.79%), Postives = 123/131 (93.89%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GL +T IFAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +CTFRLYL
Sbjct:   17 FFAFFWAFFTSSLSPVFNIGGVWPPTGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGVKKEALLGLVITIIFAVIFTGLQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSVCTFRLYL 147
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BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: A0A068ACI2_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=45 Tax=Sargassaceae TaxID=3014 RepID=A0A068ACI2_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.690e-76
Identity = 114/131 (87.02%), Postives = 123/131 (93.89%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGG+WPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GL VT +FAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +CTFRLYL
Sbjct:    4 FFAFFWAFFTSSLSPVFNIGGIWPPAGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVVTIVFAVIFTGLQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLFVCTFRLYL 134
[Close]
BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: H6UKQ8_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Sargassaceae TaxID=3014 RepID=H6UKQ8_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 4.900e-76
Identity = 117/131 (89.31%), Postives = 121/131 (92.37%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSLAPVFNIGGVWPP GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL  L +T IFAV+FT LQGFEYI+APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL ICTFRLYL
Sbjct:   25 FFAFFWAFFTSSLAPVFNIGGVWPPDGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLSLYITIIFAVIFTSLQGFEYINAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSICTFRLYL 155
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BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: T2DR71_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=56 Tax=Sargassaceae TaxID=3014 RepID=T2DR71_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 6.190e-76
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GL +T IFAV+FT LQGFEYI+APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL ICTFRLYL
Sbjct:   67 FFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALVGLIITVIFAVIFTGLQGFEYINAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSICTFRLYL 197
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BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: M1LFT0_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=Sargassaceae TaxID=3014 RepID=M1LFT0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 8.900e-76
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGGVWPP+GIEAISPWGLP LNTIILLSSGASVTWAHHAIV G KKEAL GLA+T IFAV+FT LQGFEYI+APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL ICTFRLYL
Sbjct:   83 FFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPFLNTIILLSSGASVTWAHHAIVGGFKKEALLGLAITIIFAVIFTGLQGFEYINAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSICTFRLYL 213
[Close]
BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: A0A068AA27_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=Sirophysalis trinodis TaxID=1197255 RepID=A0A068AA27_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.920e-75
Identity = 113/131 (86.26%), Postives = 121/131 (92.37%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGGVWPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAI  G KKEAL GL +T IFAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +C FRLYL
Sbjct:    3 FFAFFWAFFTSSLSPVFNIGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWAHHAIAGGFKKEALLGLVITIIFAVIFTVLQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSVCIFRLYL 133
[Close]
BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: I6TIF7_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=11 Tax=Sargassaceae TaxID=3014 RepID=I6TIF7_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 2.230e-75
Identity = 115/131 (87.79%), Postives = 122/131 (93.13%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVF +GGVWPP+GIEAISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GL +T IFAV+FT LQGFEYI+APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL ICTFRLYL
Sbjct:    3 FFAFFWAFFTSSLSPVFKMGGVWPPAGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALVGLIITVIFAVIFTGLQGFEYINAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSICTFRLYL 133
[Close]
BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Match: A0A068AEL8_9PHAE (Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=Sirophysalis trinodis TaxID=1197255 RepID=A0A068AEL8_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 5.040e-75
Identity = 113/131 (86.26%), Postives = 122/131 (93.13%), Query Frame = 3 
Query:  300 FFAFFWAFLTSSLAPVFNIGGVWPPSGIEAISPWGLPLLNTIILLSSGASVTWAHHAIVAGSKKEALYGLAVTTIFAVVFTCLQGFEYISAPFSMSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYL 692
            FFAFFWAF TSSL+PVFNIGGVWPP+GI+AISPWGLPLLNTIILLSSGASVTWAHHAIV G KKEAL GL +T IFAV+FT LQGFEY++APF+MSDSVYGSVFFMATGFHGFHVIIGTIFL +C FRLYL
Sbjct:   11 FFAFFWAFFTSSLSPVFNIGGVWPPAGIKAISPWGLPLLNTIILLSSGASVTWAHHAIVGGFKKEALLGLVITIIFAVIFTGLQGFEYVNAPFAMSDSVYGSVFFMATGFHGFHVIIGTIFLSVCIFRLYL 141
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig905.20472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ89_9PHAE6.060e-8498.47Cytochrome c oxidase subunit 3 n=8 Tax=Fucales Tax... [more]
J9JEF7_9PHAE1.170e-7687.02Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=... [more]
A0A068ACL1_9PHAE1.860e-7687.79Cytochrome c oxidase subunit 3 (Fragment) n=3 Tax=... [more]
A0A068ACI2_9PHAE2.690e-7687.02Cytochrome c oxidase subunit 3 (Fragment) n=45 Tax... [more]
H6UKQ8_9PHAE4.900e-7689.31Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=... [more]
T2DR71_9PHAE6.190e-7689.31Cytochrome c oxidase subunit 3 (Fragment) n=56 Tax... [more]
M1LFT0_9PHAE8.900e-7689.31Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=... [more]
A0A068AA27_9PHAE1.920e-7586.26Cytochrome c oxidase subunit 3 (Fragment) n=1 Tax=... [more]
I6TIF7_9PHAE2.230e-7587.79Cytochrome c oxidase subunit 3 (Fragment) n=11 Tax... [more]
A0A068AEL8_9PHAE5.040e-7586.26Cytochrome c oxidase subunit 3 (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig905contigF-serratus_M_contig905:65316..66037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog264402.Cagra.26578s0004.1.p
Preferred namecox3
KEGG koko:K02262
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.cytochrome c oxidase subunit 3
EggNOG OGs37QER@33090,3G8C5@35493,3HY38@3699,COG1845@1,KOG4664@2759
COG Functional cat.C
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Exons1
Model size722
Cds size141
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932640.7482069-UTR-F-serratus_M_contig905:65315..658961622932640.7482069-UTR-F-serratus_M_contig905:65315..65896Fucus serratus maleUTRF-serratus_M_contig905 65316..65896 +
1690964399.7255745-UTR-F-serratus_M_contig905:65315..658961690964399.7255745-UTR-F-serratus_M_contig905:65315..65896Fucus serratus maleUTRF-serratus_M_contig905 65316..65896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932640.766767-CDS-F-serratus_M_contig905:65896..660371622932640.766767-CDS-F-serratus_M_contig905:65896..66037Fucus serratus maleCDSF-serratus_M_contig905 65897..66037 +
1690964399.73874-CDS-F-serratus_M_contig905:65896..660371690964399.73874-CDS-F-serratus_M_contig905:65896..66037Fucus serratus maleCDSF-serratus_M_contig905 65897..66037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig905.20472.1prot_F-serratus_M_contig905.20472.1Fucus serratus malepolypeptideF-serratus_M_contig905 65897..66037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig905.20472.1

>prot_F-serratus_M_contig905.20472.1 ID=prot_F-serratus_M_contig905.20472.1|Name=mRNA_F-serratus_M_contig905.20472.1|organism=Fucus serratus male|type=polypeptide|length=47bp
MSDSVYGSVFFMATGFHGFHVIIGTIFLVICTFRLYLCYAVESVRA*
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mRNA from alignment at F-serratus_M_contig905:65316..66037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig905.20472.1 ID=mRNA_F-serratus_M_contig905.20472.1|Name=mRNA_F-serratus_M_contig905.20472.1|organism=Fucus serratus male|type=mRNA|length=722bp|location=Sequence derived from alignment at F-serratus_M_contig905:65316..66037+ (Fucus serratus male)
ATGAAATCTCAATCTAAATTGATTCAACGACATCCTTTTCATTTGGTTGA
CCCAAGCCCTTGGCCGTTTGTAGCAGCTTTAGGGGGTTTAAGTTTGGCCT
TTGGTGGAGTATTGTATATGCATAATTATAGTGGGGGTGGTCAACTGCTG
ATTTTAGGAGTAATAGCTATTTTATACGTGATGTTTACTTGGTGGAGAGA
CATTATCCGTGAGGCTTTGTTTGAGGGTCAGCATGCTGTTGCCGTCCAGC
AGGGGTTGCGCATGGGTATGAATCTTTTTATTGTCTCCGAGGTTATGTTT
TTTTTGCGTTTTTTTGGGCATTTTTAACTTCTTCCCTAGCTCCTGTATTT
AATATAGGAGGTGTTTGGCCCCCTTCTGGTATTGAGGCAATAAGTCCATG
GGGGTTGCCGCTTTTAAACACTATTATTTTACTATCTTCTGGAGCTAGTG
TTACATGGGCTCATCATGCAATTGTTGCAGGTTCTAAAAAGGAGGCCTTG
TATGGTTTAGCGGTTACTACAATATTTGCAGTTGTTTTTACGTGCTTGCA
GGGTTTTGAATATATTAGTGCTCCTTTCTCGATGTCCGATAGCGTTTACG
GTTCAGTCTTTTTTATGGCTACAGGCTTTCATGGTTTTCATGTAATTATT
GGTACTATATTTTTAGTTATATGTACTTTTCGCTTATATTTGTGTTACGC
AGTAGAAAGCGTAAGAGCGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig905:65316..66037+

>mRNA_F-serratus_M_contig905.20472.1 ID=mRNA_F-serratus_M_contig905.20472.1|Name=mRNA_F-serratus_M_contig905.20472.1|organism=Fucus serratus male|type=CDS|length=282bp|location=Sequence derived from alignment at F-serratus_M_contig905:65316..66037+ (Fucus serratus male)
ATGTCCGATAGCGTTTACGGTTCAGTCTTTTTTATGGCTACAGGCTTTCA
TGGTTTTCATGTAATTATTGGTACTATATTTTTAGTTATATGTACTTTTC
GCTTATATTTGTGTTACGCAGTAGAAAGCGTAAGAGCGTGAATGTCCGAT
AGCGTTTACGGTTCAGTCTTTTTTATGGCTACAGGCTTTCATGGTTTTCA
TGTAATTATTGGTACTATATTTTTAGTTATATGTACTTTTCGCTTATATT
TGTGTTACGCAGTAGAAAGCGTAAGAGCGTGA
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