mRNA_F-serratus_M_contig903.20456.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5KKU2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU2_9PHAE) HSP 1 Score: 257 bits (657), Expect = 5.260e-71 Identity = 133/239 (55.65%), Postives = 162/239 (67.78%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHL 2583
R +N KAV P + EL K+ L+GD L R I+V VW+TG+VPQ WKDA T VL KK D ECGNYR ISLVAHAGK+LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++FAA++ VA F D + +V +
Sbjct: 182 REMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDA-TIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKI 419
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5KAA3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA3_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.340e-70 Identity = 131/239 (54.81%), Postives = 161/239 (67.36%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHL 2583
R +N KAV P + EL K+ L+GD L R I+V VW+TG+VPQ WKD T VL KK D ECGNYR ISLVAHAGK++LK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++FAA++ VA F D + +V +
Sbjct: 330 RGMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDT-TIKVLFKKGDTMECGNYRGISLVAHAGKVMLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKI 567
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5JLV5_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV5_9PHAE) HSP 1 Score: 248 bits (632), Expect = 1.660e-70 Identity = 129/240 (53.75%), Postives = 158/240 (65.83%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHLR 2586
R N KAV P + EL K+ L+GD L R +V VW+TG+VPQ WKDA T VL KK D ECG YR ISLVAHAG +LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLR GC LA LLFN++FAA++ VA F D +M +V ++
Sbjct: 124 REMVNRKAVGPDDLPAELIKLFLDGDQGLLREFHATVVDVWQTGDVPQQWKDA-TIKVLFKKGDTMECGKYRGISLVAHAGNVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFGVGQGLRLGCNLASLLFNLFFAAMLMVAVAEFDKDPKVMADMVKIK 362
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE) HSP 1 Score: 251 bits (641), Expect = 2.000e-70 Identity = 135/255 (52.94%), Postives = 166/255 (65.10%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHLRKKRDARG-RGKQLSK 2628
R +N KAV P + EL K+ L+GD R I+V VW+TG VPQ WKDA T VL KK D ECGNYR ISLVAHAGK+LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++ AA+ VA T F D + ++ + + + G RG+ K
Sbjct: 79 RGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA-TIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGK 332
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5KQK0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK0_9PHAE) HSP 1 Score: 254 bits (650), Expect = 6.620e-70 Identity = 132/239 (55.23%), Postives = 160/239 (66.95%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHL 2583
R +N KAV P + EL K+ LNGD L R +V VW+TG+VPQ WKDA T VL KK D ECGNYR ISLVAHAGK+LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +D TKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++FAA++ VA F D + +V +
Sbjct: 278 REMANRKAVGPDDLPAELIKLFLNGDQGLLREFHATVVDVWQTGDVPQQWKDA-TIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDPTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKI 515
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5L806_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L806_9PHAE) HSP 1 Score: 251 bits (641), Expect = 4.180e-69 Identity = 130/239 (54.39%), Postives = 158/239 (66.11%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHL 2583
R N KAV P + EL K+ L+ L R I+V VW+TG+VPQ WKDA T VL KK D ECGNYR ISLVAHAGK+LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++FA ++ VA F D + +V +
Sbjct: 124 RERDNRKAVGPDDLPAELIKLFLDEGQGLLREFHAIVVNVWQTGDVPQQWKDA-TIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAVILMVAVAEFDRDPKVTADMVKI 361
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5KC64_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC64_9PHAE) HSP 1 Score: 248 bits (634), Expect = 8.800e-69 Identity = 131/229 (57.21%), Postives = 155/229 (67.69%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKAD 2553
R +N KAV P + EL K+ L+GD L R I+V VW+TG+VPQ WKDA T VL KK DR ECGNYR ISLVAHAGK+LLK +A RLS CE IL EQSGFR +RST DM+F I+ L ELTR K ++ +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++FA ++ A F D
Sbjct: 335 REMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDA-TIKVLFKKGDRMECGNYRGISLVAHAGKVLLKFVATRLSHCCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELTRKKSTAVFAHFVDLTKAYDSVDQDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFALMLMNAVAEFDKD 562
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.310e-68 Identity = 135/255 (52.94%), Postives = 166/255 (65.10%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHLRKKRDARG-RGKQLSK 2628
R +N KAV P + EL K+ L+GD R I+V VW+TG VPQ WKDA T VL KK D ECGNYR ISLVAHAGK+LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++ AA+ VA T F D + ++ + + + G RG+ K
Sbjct: 79 RGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDA-TIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLGRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGK 332
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5K0M7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M7_9PHAE) HSP 1 Score: 252 bits (644), Expect = 1.390e-68 Identity = 135/255 (52.94%), Postives = 167/255 (65.49%), Query Frame = 1
Query: 1867 RRTSNVKAVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHLRKKRDARG-RGKQLSK 2628
R +N KAV P + EL K+ L+GD L R I+V VW+TG+VPQ W DA T VL KK D ECGNYR ISLVAHAGK+LLK++A RLS +CE IL EQSGFR +RST DM+F I+ L EL R K ++ C +DLTKAYDSVD LLW V FGVP M++VIR FH+GM+A VR D+ WF V QGLRQGC LAPLLFN++ AA+ VA T F D + ++ + + + G RG+ K
Sbjct: 249 REMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWNDA-TIKVLFKKGDTMECGNYRGISLVAHAGKVLLKVVATRLSHYCEREGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFSAAMRMVAVTEFDKDPKVTADMIKIATRVECTGKRGRSAGK 502
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE) HSP 1 Score: 244 bits (622), Expect = 1.720e-68 Identity = 128/233 (54.94%), Postives = 156/233 (66.95%), Query Frame = 1
Query: 1888 AVEPYGVSVELFKITLNGDPALRRRLLDIIVRVWRTGEVPQHWKDAITCMVLHKKKDRTECGNYRDISLVAHAGKILLKIIARRLSEHCEHVRILTGEQSGFRLNRSTTDMMFVIRWLQELTRTKRIPLYVCCIDLTKAYDSVD*TLLWTVHACFGVPQIMISVIRKFHDGMQACVRLDNRVC*RWFAVEQGLRQGCVLAPLLFNIYFAAVINVASTHFKADKGIMDALVHLR 2586
AV P ++ EL K+ + +P + RL I V VW GE+PQ WKDAI VL+KK DR+ C NYR ISL++H GK+L K I RLS CE IL EQ GFR RST M+FV+R LQEL R +RIPLY+C IDL KAYDSVD LLW V A G+P MI+VIRKFH GM+A VR D+ WF V QGLRQGC ++PLLFN++FAA + V F D+ IM LV+L+
Sbjct: 6 AVGPDLLAAELLKVDGDDEPIVLERLRAIFVEVWNGGEMPQEWKDAII-KVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSISPLLFNVFFAAPLEVIVARFSKDEVIMRDLVYLK 237 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig903.20456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig903.20456.1 >prot_F-serratus_M_contig903.20456.1 ID=prot_F-serratus_M_contig903.20456.1|Name=mRNA_F-serratus_M_contig903.20456.1|organism=Fucus serratus male|type=polypeptide|length=205bp MNEEFEGLKDSITFKVLDGLPEGEKATGSRWVLSSKSNKNRNITKTKARLback to top mRNA from alignment at F-serratus_M_contig903:280145..282806+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig903.20456.1 ID=mRNA_F-serratus_M_contig903.20456.1|Name=mRNA_F-serratus_M_contig903.20456.1|organism=Fucus serratus male|type=mRNA|length=2662bp|location=Sequence derived from alignment at F-serratus_M_contig903:280145..282806+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig903:280145..282806+ >mRNA_F-serratus_M_contig903.20456.1 ID=mRNA_F-serratus_M_contig903.20456.1|Name=mRNA_F-serratus_M_contig903.20456.1|organism=Fucus serratus male|type=CDS|length=1230bp|location=Sequence derived from alignment at F-serratus_M_contig903:280145..282806+ (Fucus serratus male)back to top |