mRNA_F-serratus_M_contig1277.2044.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 388 bits (997), Expect = 2.230e-128 Identity = 217/421 (51.54%), Postives = 270/421 (64.13%), Query Frame = 1
Query: 1 RSIADHNFHAQVK*AFYAFEALGEHPFNFTSYEHGYFPEIFTIDGCAKVATDNVSTAQFEVARVDRVVDGDLDHQLAKISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLLITDIPCMIQPIADRVRPGLLQDGGRLPRGPDGVVSMPAMQHVGRASRDAVNKYSLQVPPGGYPSP--SLRQDMRQDNIYVAYAGAEPSPHVQPHIDFRKLLRRTAMAAAGEGGANRVGDVPYQGIR--TLAEMHLDSLHQQGCYDMTLFDVVVVHAQWF--AEGGRSDDEG 1242
RSIADHNF +K +YAFEAL +HP+ F SYE G FPEI TIDGCAK+ TDN T+QF++AR +R VD D HQL KISMISKM F R+RF+ EA PTF + GKM GSP+ GD+ +L+ AL I LSSK+ DLK I+ CF GI+ + K+ LVQC LW S G G G C+KLFI + G+TAGVEG F DGVM A+VF+I AES ADAVDV H V P L+ITDIPCM+ PIA+R+ P LL++ GRLPR DGVVS+PA+QH+G + + +++S++ P +PSP S D+ DNIY YA A S QPH++F LL+R+A +A E VGD R TLAE L SLHQQGCY MTLF+VV V + W A ++DD G
Sbjct: 34 RSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAE-----VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGG 449
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.490e-82 Identity = 140/250 (56.00%), Postives = 170/250 (68.00%), Query Frame = 1
Query: 4 SIADHNFHAQVK*AFYAFEALGEHPFNFTSYEHGYFPEIFTIDGCAKVATDNVSTAQFEVARVDRVVDGDLDHQLAKISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGTCTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLLIT 753
SI DH FHA +K A++AFEAL +HPF F S+ HG +PEIF IDGCAK+ TD+VS QF++ARV+R VD +L +++ K+SMISKM F + LR++ EA P F PT P GSPEDGD +L+ AL I LS K+ DLK I+R CF G GI+ Y TK L QCL +LWE + G G+ C KLFI +PSGSTAGVEGLF DGVM AHVF+I AESPADAVD+L HL VS C L T
Sbjct: 14 SIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFGPT----------------PVGSPEDGDAGELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELADGEGE-RCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVHLPVSYCTLST 246
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE) HSP 1 Score: 253 bits (646), Expect = 9.770e-78 Identity = 137/251 (54.58%), Postives = 172/251 (68.53%), Query Frame = 1
Query: 1 RSIADHNFHAQVK*AFYAFEALGEHPFNFTSYEHGYFPEIFTIDGCAKVATDNVSTAQFEVARVDRVVDGDLDHQLAKISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAG-VEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLL 747
RSI DHNFHA +K A++AFEAL + PF F S+ G + EIF IDGCAK+ TD+VS QF++AR +R VD DL +++ K+S+ISKM F +RLR++ EA P F P G+M P GSPE+GD +L+ AL I LS K + DL+ I+R CF G GI+ Y TK LVQCL +LWES+ G+G C+KLFI +PSGSTAG VEGLF D VM AHVF+I AESPADAVD+L HL V+ C L
Sbjct: 60 RSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADLHNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLVTYCTL 309
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.740e-67 Identity = 112/219 (51.14%), Postives = 150/219 (68.49%), Query Frame = 1
Query: 4 SIADHNFHAQVK*AFYAFEALGEHPFNFTSYEHGYFPEIFTIDGCAKVATDNVSTAQFEVARVDRVVDGDLDHQLAKISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAGVEGLFATDGV 657
SI DHNF A ++ A++AFE L +HPF+F SY +G+ PE+ +IDGCAKV +D+ + A F+ AR +R+VD DL HQL K+SMISKM F++RLR+++EA PTF GK PP GS E GD +LL AL+G G++ L+ KT+DDLK I+R CF G GI++Y+ K D + C +LW + G + C+K+FI RPSG TAGVEGLF DGV
Sbjct: 16 SIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSAETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGV 234
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 233 bits (593), Expect = 9.500e-67 Identity = 148/420 (35.24%), Postives = 205/420 (48.81%), Query Frame = 1
Query: 7 IADHNFHAQVK*AFYAFEALGEHPFNFTSYEHGYFPEIFTIDGCAKVATDNVSTAQFEVARVDRVVDGDLDHQLAKISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLLITDIPCMIQPIADRVRPGLLQDGGRLPRGPDGVVSMPAMQHVGRASRDAVNKYSLQVPPGG--YPSPSLRQ-----DMRQDNIYVAYAGAEPSPHVQPHIDFRKLLRRTAMAAAGEG---GANRVGDVPYQGIRTLAEMHLDSLHQQGCYDMTLFDVVVVHAQWFAEGGRSD 1233
I DHNF A ++ A++AFE L +HPF+F SY +G+ PE+ +IDGCAKV +D+ + A F+ AR +R+VD DL HQL K+SMISKM+ D + C +LW + G + C+K+FI RPSG TAGVEGLF DGV+N+H+ +++ P W +P +L+TDIPCM+ P A++ PGLLQ+GG LPR G VS+P +QH+G D +++ ++VPP G + S S D + N+Y A+A A P VQPHIDF LL+ G + P + I LAE L LHQQGCY + LF+VV+ +A WF E +D
Sbjct: 7 IRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKME----------------------------------------------------------------------------------------DFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATALSGP-VQPHIDFSALLKHAGDVVERNRQVQGTDDWSSSPKR-ISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVAD 336
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.680e-58 Identity = 141/370 (38.11%), Postives = 188/370 (50.81%), Query Frame = 1
Query: 241 MISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCF---------------RRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLLITDIPCMI-QPIAD-----RVRPGLLQDGGRLPRGPDGVVSMPAMQHVGRASRDAVNKYSLQVPPGGYPSPSLRQDMRQDN-------IYVAYAGAEPSPHVQPHIDFRKLLRRTAMAA-------AGEGGANRVG-DVPYQGIRTLAEMHLDSLHQQGCYDMTLFDVVVVHAQWFAEGGRSDDE 1239
MISKM F RLR++ EA PT SP GK+ P G+PE GD LL AL I LS+KT DDL+ I+R C+ R + + L+QCLTR WES+ G GD C+++FI +PSG T GVEGLF TDGV+ A VF++ ES AD VD++ H Q S T +P P+ D P GG LPR + V + +QHVG + + + ++VPP +PSP+ + +Y AYA +P P VQPH+DFR LL+R A EG A+ V + I LAE L SLH+QG + MTLF+VV+++ WF + E
Sbjct: 1 MISKMVFDRRLRWVVEAAPTVSPHNRISNVMHRTARGKLAPEGAPERGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESA-GIGDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISHRQSS-----TTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGVDWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLMYMLWFQAAAHAAPE 364
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.040e-48 Identity = 103/237 (43.46%), Postives = 143/237 (60.34%), Query Frame = 1
Query: 568 RGDGT-CTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLLITDIPCMIQPIADRVRPGLLQDGGRLPRGPDGVVSMPAMQHVGRASRDAVNKYSLQVPPGGYPSPSLR---------QDMRQDNIYVAYAGAEPSPHVQPHIDFRKLLRRTAMAAAGEGGANRVGDVPYQGIRT--LAEMHLDSLHQQGCYDMTLFDVVVVHAQWFAEGGRSDDEG 1242
+G+G C+KLF+ +PSG+TAGVEG F TDGV F++ ES AD VD+L H+ V PCL+ITDIPC I PIA+R+ PGLLQDGG LPR +G V + +QH+G + + +++ ++VPP G+P+ + AE +P VQPH+DFR LLRR AA + A V D +R LAE L+ LH++G Y MTL++VV+++ WF G + EG
Sbjct: 4 QGEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRR---AADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPEG 237
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.040e-46 Identity = 83/167 (49.70%), Postives = 112/167 (67.07%), Query Frame = 1
Query: 235 ISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQV 732
+SMISKM F++RLR+++EA PTF GK PP GSPE GD +LL AL+G G++ L+ KT+DDLK I+R CF G GI++Y+ K D + C +LW + G + C+K+FI RPSG TAGVEGLF DGV+N+H+ ++ +ESPAD VD + HL V
Sbjct: 1 MSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSPETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHLAV 167
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.270e-42 Identity = 79/155 (50.97%), Postives = 102/155 (65.81%), Query Frame = 1
Query: 4 SIADHNFHAQVK*AFYAFEALGEHPFNFTSYEHGYFPEIFTIDGCAKVATDNVSTAQFEVARVDRVVDGDLDHQLAKISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYI 468
SI DHNF A +K A++AFEAL +HPF F S+ HG +PEIF IDGCAK+ TD+VS QF+ AR +R VD DL +++ K+SMISKM F +RLR++ EA P P G+M P GSPE+GD +L+ AL I LS K++ DLK I
Sbjct: 14 SIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKSVSDLKNI 168
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE) HSP 1 Score: 137 bits (346), Expect = 6.860e-35 Identity = 82/172 (47.67%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 235 ISMISKMQFKSRLRFISEALPTFSPTTAYRT*CTGGEEGKMPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIASYSTKNDLVQCLTRLWESSSGRGDGT-CTKLFIERPSGSTAGVEGLFATDGVMNAHVFEILAESPADAVDVLWHLQVSPCLL 747
+SMI KM F +RLR++ EA PTF P G+M P GSPE+GD +L+ AL + LS K+ LVQCL +LWES+ G+ C+KLFI +PSGSTAGVEGLF DGVM AHVF+I AESPADAVD+L HL VS C L
Sbjct: 1 MSMIYKMIFNARLRWVLEAAPTFGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAVTDLSDKS------------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLVSYCAL 148 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1277.2044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1277.2044.1 >prot_F-serratus_M_contig1277.2044.1 ID=prot_F-serratus_M_contig1277.2044.1|Name=mRNA_F-serratus_M_contig1277.2044.1|organism=Fucus serratus male|type=polypeptide|length=296bp MPPRGSPEDGDVNQLLLALDGSGIEALSSKTIDDLKYIFRQCFRRGSGIAback to top mRNA from alignment at F-serratus_M_contig1277:143101..145015+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1277.2044.1 ID=mRNA_F-serratus_M_contig1277.2044.1|Name=mRNA_F-serratus_M_contig1277.2044.1|organism=Fucus serratus male|type=mRNA|length=1915bp|location=Sequence derived from alignment at F-serratus_M_contig1277:143101..145015+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1277:143101..145015+ >mRNA_F-serratus_M_contig1277.2044.1 ID=mRNA_F-serratus_M_contig1277.2044.1|Name=mRNA_F-serratus_M_contig1277.2044.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig1277:143101..145015+ (Fucus serratus male)back to top |