mRNA_F-serratus_M_contig902.20440.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig902.20440.1 vs. uniprot
Match: A0A6H5LDR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDR5_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.360e-30 Identity = 93/185 (50.27%), Postives = 107/185 (57.84%), Query Frame = 2
Query: 755 EWRDAPRAKSAALYELNMQLAAYAKDAQWEKAVVLLKQALALSDSRNKD--------------------------SSASPSDREGVGSYGNSTSSMNSAPALLDSNHPREQI----TVEPNVVSFNNVITACANAKKQKRAEGIFREMTKERGLRPNVFTYGALVSACAKRGNWEDAVNYLQRMR 1219
EWRDAPRA S AL+ELNMQLAAYAKDAQWE A++LL+QA LS + + + R GV GN S+ S P + E VEPNVVS+NNVITACANAKKQKRAEGIFREMTKERG+R AKRGNWED+VNYL++MR
Sbjct: 172 EWRDAPRADSDALFELNMQLAAYAKDAQWEMAIMLLRQARVLSRRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAAKRRYGVHPGGNDNLSV-SVPYTSAAEKEEEWRLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRXXXXXXXXXXXXXAKRGNWEDSVNYLEQMR 355
BLAST of mRNA_F-serratus_M_contig902.20440.1 vs. uniprot
Match: D7FHW4_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW4_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.350e-23 Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 2
Query: 2369 LNGRRNCLANVQSFAPLVEALSRELRWEEAIVLFQDMENRKITPTVXXXXXXXXXXXXXXXXXXXXXXXXEMREKRIRFYDIGILDELFKRLLAAVSLLRGRGGTPGS---GSSPR 2707
L RRNC + S+ PLV+AL+RELRW+EAI+LFQ+ME+RKI PTV +MR+KR+RFYDIGILDELFKRLLA +SLLRGRGG G+ G +PR
Sbjct: 531 LQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFYDIGILDELFKRLLAGLSLLRGRGGPGGAKGRGGAPR 646 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig902.20440.1 >prot_F-serratus_M_contig902.20440.1 ID=prot_F-serratus_M_contig902.20440.1|Name=mRNA_F-serratus_M_contig902.20440.1|organism=Fucus serratus male|type=polypeptide|length=928bp MTRSSFHPLHGNDSSSRNNRTGRGKRRRSFSRGINLLNLARVLGIMSAVGback to top mRNA from alignment at F-serratus_M_contig902:191014..199178- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig902.20440.1 ID=mRNA_F-serratus_M_contig902.20440.1|Name=mRNA_F-serratus_M_contig902.20440.1|organism=Fucus serratus male|type=mRNA|length=8165bp|location=Sequence derived from alignment at F-serratus_M_contig902:191014..199178- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig902:191014..199178- >mRNA_F-serratus_M_contig902.20440.1 ID=mRNA_F-serratus_M_contig902.20440.1|Name=mRNA_F-serratus_M_contig902.20440.1|organism=Fucus serratus male|type=CDS|length=5568bp|location=Sequence derived from alignment at F-serratus_M_contig902:191014..199178- (Fucus serratus male)back to top |