prot_F-serratus_M_contig902.20440.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig902.20440.1
Unique Nameprot_F-serratus_M_contig902.20440.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length928
Homology
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BLAST of mRNA_F-serratus_M_contig902.20440.1 vs. uniprot
Match: A0A6H5LDR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDR5_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.310e-30
Identity = 93/185 (50.27%), Postives = 107/185 (57.84%), Query Frame = 0 
Query:  252 EWRDAPRAKSAALYELNMQLAAYAKDAQWEKAVVLLKQALALSDSRNKD--------------------------SSASPSDREGVGSYGNSTSSMNSAPALLDSNHPREQI----TVEPNVVSFNNVITACANAKKQKRAEGIFREMTKERGLRPNVFTYGALVSACAKRGNWEDAVNYLQRMR 406
            EWRDAPRA S AL+ELNMQLAAYAKDAQWE A++LL+QA  LS   +                             + +   R GV   GN   S+ S P    +    E       VEPNVVS+NNVITACANAKKQKRAEGIFREMTKERG+R             AKRGNWED+VNYL++MR
Sbjct:  172 EWRDAPRADSDALFELNMQLAAYAKDAQWEMAIMLLRQARVLSRRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAAKRRYGVHPGGNDNLSV-SVPYTSAAEKEEEWRLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRXXXXXXXXXXXXXAKRGNWEDSVNYLEQMR 355
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BLAST of mRNA_F-serratus_M_contig902.20440.1 vs. uniprot
Match: D7FHW4_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.320e-23
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0 
Query:  790 LNGRRNCLANVQSFAPLVEALSRELRWEEAIVLFQDMENRKITPTVXXXXXXXXXXXXXXXXXXXXXXXXEMREKRIRFYDIGILDELFKRLLAAVSLLRGRGGTPGS---GSSPR 902
            L  RRNC   + S+ PLV+AL+RELRW+EAI+LFQ+ME+RKI PTV                        +MR+KR+RFYDIGILDELFKRLLA +SLLRGRGG  G+   G +PR
Sbjct:  531 LQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFYDIGILDELFKRLLAGLSLLRGRGGPGGAKGRGGAPR 646
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20440.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDR5_9PHAE1.310e-3050.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHW4_ECTSI1.320e-2354.31PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 447..491
e-value: 4.3E-10
score: 39.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 416..445
e-value: 7.8E-4
score: 19.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 822..867
e-value: 9.8E-7
score: 28.8
coord: 339..392
e-value: 1.9E-12
score: 47.0
coord: 505..566
e-value: 3.5E-5
score: 23.8
coord: 575..635
e-value: 8.6E-12
score: 45.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 450..483
e-value: 1.6E-8
score: 32.2
coord: 416..447
e-value: 1.0E-4
score: 20.3
coord: 802..834
e-value: 7.4E-4
score: 17.5
coord: 590..624
e-value: 4.1E-8
score: 30.9
coord: 660..693
e-value: 3.5E-6
score: 24.8
coord: 731..764
e-value: 7.5E-5
score: 20.7
coord: 626..658
e-value: 0.0012
score: 16.8
coord: 380..414
e-value: 1.7E-8
score: 32.1
coord: 344..379
e-value: 0.001
score: 17.1
coord: 837..866
e-value: 4.0E-5
score: 21.5
coord: 695..729
e-value: 1.3E-5
score: 23.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 799..833
score: 10.106
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 623..657
score: 9.876
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 553..587
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 483..517
score: 8.495
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 763..797
score: 7.936
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 413..447
score: 11.257
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 518..552
score: 8.89
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 588..622
score: 12.222
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 342..377
score: 9.613
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 834..868
score: 10.128
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 448..482
score: 11.718
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 693..727
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 728..762
score: 10.501
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 658..692
score: 11.992
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 378..412
score: 12.934
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 630..744
e-value: 2.1E-34
score: 120.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 456..618
e-value: 2.9E-43
score: 150.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 263..445
e-value: 6.6E-34
score: 119.8
coord: 745..879
e-value: 3.7E-29
score: 104.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 276..612
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 636..769
e-value: 6.3E-12
score: 45.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 549..755
coord: 672..866
coord: 444..564
coord: 314..487

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig902contigF-serratus_M_contig902:191054..199177 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig902.20440.1mRNA_F-serratus_M_contig902.20440.1Fucus serratus malemRNAF-serratus_M_contig902 191014..199178 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig902.20440.1 ID=prot_F-serratus_M_contig902.20440.1|Name=mRNA_F-serratus_M_contig902.20440.1|organism=Fucus serratus male|type=polypeptide|length=928bp
MTRSSFHPLHGNDSSSRNNRTGRGKRRRSFSRGINLLNLARVLGIMSAVG
AGGNLGGLSPLSSLTRTATLSADGSDLCRNNPGASQARRILPRERSKTRL
ASFVFLFPRVYGAYPSKLKTALVCASSSTGTNTNTGCGGSRKRQPKSNRS
TTFSCSRRNDPSLSILVGTTEITAGRRKLHHWQCRAHPAGGELTALHSDA
IPTTTPPALGLDMGEKGSREELNSAPDEGGTKQVVSGKNAAAPAVSSLEE
SEWRDAPRAKSAALYELNMQLAAYAKDAQWEKAVVLLKQALALSDSRNKD
SSASPSDREGVGSYGNSTSSMNSAPALLDSNHPREQITVEPNVVSFNNVI
TACANAKKQKRAEGIFREMTKERGLRPNVFTYGALVSACAKRGNWEDAVN
YLQRMREAGLAPNAIIYSTVISACERGGQWQKAVNFLRAMRNDGILPVTI
TYNTVISACGKNGQWSLAISLLDEMADLGAPPDSVTFASAMLACERAKQW
QQVLRIMDQMQEDDILIDKYAYTTAIHASAQLGKWARSVRYLNEMDANGI
QKDVVTISAAISACADKGQWAQAESLLQDILDAGLTPNVVTYTSLMVVLR
KSGQYEKAISILELMRSKGVKPNVRSFSVAIAACADAKEWQRALKLMESM
EKDRVPPNSVTYNTAIRACGDAGALEEALVLLDEMEAKGMKLTVVTYGTA
VSACQRRGDWQTALELLAKMRMEKIEPNEIVYGGIIKACCAGGEAKKALE
LLSRMIDLRLRPNTQCFNVVIKALAEDGQIHEAMRLLKTLNGRRNCLANV
QSFAPLVEALSRELRWEEAIVLFQDMENRKITPTVQSYTGVVRACERAGQ
YDLALKLLNEMREKRIRFYDIGILDELFKRLLAAVSLLRGRGGTPGSGSS
PRKSIGGKGRGRDTFGGRGDGKSEGGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long