mRNA_F-serratus_M_contig87.20065.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig87.20065.1
Unique NamemRNA_F-serratus_M_contig87.20065.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A1B6ENF5_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6ENF5_9HEMI)

HSP 1 Score: 130 bits (326), Expect = 1.660e-35
Identity = 67/153 (43.79%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRKH 486
            W + D P GK  +  K V+K K   DG VE+YK R V KG+ Q KG  Y E+ SP     +IR  L++ A      +Q DV  AFL  ++ EE+Y++ P+GY D   +V RL K+ YGL  A   W+KKFG  L+  GFK+S ADPC+F +K+
Sbjct:    4 WILADLPPGKKAIPCKWVYKVKTNPDGTVERYKARLVIKGYSQRKGTDYGETFSPVAKAGTIRALLSIAANEKMILKQFDVSTAFLYGELEEEIYMQQPEGYSDGSGKVCRLIKSFYGLKQAPRCWNKKFGSFLVNLGFKKSDADPCLFIKKN 156          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A8J6LQ49_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LQ49_TENMO)

HSP 1 Score: 134 bits (336), Expect = 1.290e-33
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            W++VD P+GK  +  K V+K K   DG ++K+K R V KG+ Q +GI Y E+ SP   +S+IR  L+V A    +  Q+DV  AFL  D+ E +Y++ P+G+ D   +V RL+K++YGL  A   W++KF   +I  GF+RS+ADPC+F R+
Sbjct:   90 WELVDLPQGKRAISNKWVYKVKTNADGSIDKFKARLVIKGYSQQRGIDYDETFSPVARKSTIRTLLSVAANEGMKLAQIDVSTAFLYGDLKETIYMQQPEGHCDGSGRVCRLKKSLYGLKQAPRCWNEKFSNYIIKLGFRRSEADPCLFVRQ 241          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A8J6HDY0_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HDY0_TENMO)

HSP 1 Score: 134 bits (337), Expect = 2.110e-33
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            W++VD P+GK  +  K V+K K   DG ++K+K R V KG+ Q +GI Y E+ SP   +S+IR  L+V A    +  Q+DV  AFL  D+ E +Y++ P+G+ D   +V RL+K++YGL  A   W++KF   +I  GF+RS+ADPC+F R+
Sbjct:  525 WELVDLPQGKRAISNKWVYKVKTNADGSIDKFKARLVIKGYSQQRGIDYDETFSPEARKSTIRTLLSVAANEGMKLAQIDVSTAFLYGDLKETIYMQQPEGHGDGSGRVCRLKKSLYGLKQAPCCWNEKFSNYIIKLGFRRSEADPCLFVRQ 676          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A2R6QI23_ACTCC (Endonuclease (Fragment) n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QI23_ACTCC)

HSP 1 Score: 132 bits (332), Expect = 2.650e-33
Identity = 69/152 (45.39%), Postives = 93/152 (61.18%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            W +VD P GK+++G + V+K K   DG VE+YK R VAKGF Q  GI Y+E+ +P    +S+R  LAV A   W   Q+DV+ AFL  D+TEE+Y++LP G   S NQV RL++A+YGL  A   W  KF   +   GF  S  D  +F R+
Sbjct:  345 WDLVDLPPGKSIIGCRWVYKIKTRADGTVERYKARLVAKGFTQEYGIDYEETFAPVARLTSVRSLLAVAATRGWSLCQMDVKNAFLNGDLTEEVYMQLPPGSSSSSNQVCRLRRALYGLKQAPRAWYAKFSSTICDLGFSASAYDSALFTRQ 496          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A8J6HGL1_TENMO (Integrase catalytic domain-containing protein n=2 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGL1_TENMO)

HSP 1 Score: 134 bits (336), Expect = 2.970e-33
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            W++VD P+GK  +  K V+K K   DG ++K+K R V KG+ Q +GI Y E+ SP   +S+IR  L+V A    +  Q+DV  AFL  D+ E +Y++ P+G+ D   +V RL+K++YGL  A   W++KF   +I  GF+RS+ADPC+F R+
Sbjct: 1168 WELVDLPQGKRAISNKWVYKVKTNADGSIDKFKARLVIKGYSQQRGIDYDETFSPVARKSTIRTLLSVAANEGMKLAQIDVSTAFLYGDLKETIYMQQPEGHCDGSGRVCRLKKSLYGLKQAPRCWNEKFSNYIIKLGFRRSEADPCLFVRQ 1319          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A8J6L9T5_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L9T5_TENMO)

HSP 1 Score: 134 bits (336), Expect = 3.010e-33
Identity = 65/152 (42.76%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            W++VD P+GK  +  K V+K K   DG ++K+K R V KG+ Q +GI Y E+ SP   +S+IR  L+V A    +  Q+DV  AFL  D+ E +Y++ P+G+ D   +V RL+K++YGL  A   W++KF   +I  GF+RS+ADPC+F R+
Sbjct:  842 WELVDLPQGKRAISNKWVYKVKTNADGSIDKFKARLVIKGYSQQRGIDYDETFSPVARKSTIRTLLSVAANEGMKLAQIDVSTAFLYGDLKETIYMQQPEGHCDGSGRVCRLKKSLYGLKQAPRCWNEKFSNYIIKLGFRRSEADPCLFVRQ 993          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A8J6HMR3_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HMR3_TENMO)

HSP 1 Score: 133 bits (334), Expect = 5.290e-33
Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            W++VD P GK  +  K V+K K   DG ++K+K R V KG+ Q +GI Y E+ SP   +S+IR  L+V A    +  Q+DV  AFL  D+ E +Y++ P+G+ D   +V RL+K++YGL  A   W++KF   +I  GF+RS+ADPC+F R+
Sbjct:  558 WELVDLPHGKRAISNKWVYKVKTNADGSIDKFKARLVIKGYSQQRGIDYDETFSPVARKSTIRTLLSVAANEGMKLAQIDVSTAFLYGDLKETIYMQQPEGHCDGSGRVCRLKKSLYGLKQAPRCWNEKFSNYIIKLGFRRSEADPCLFVRQ 709          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 133 bits (334), Expect = 5.470e-33
Identity = 64/155 (41.29%), Postives = 99/155 (63.87%), Query Frame = 1
Query:   22 GVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVF-WRK 483
            G W++ D PK +  +G K VF+RK  ++G+V KYK R VA+G+ QI G+ + E+ +P     SIR  LA+    +WE  Q+DV+ A+L  D+ EE+Y+  P+G+ D   ++ RL+K +YGL  +G  W++K   EL   G+KR +ADPCV+ W +
Sbjct:  937 GTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWER 1091          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: UPI001BC8B8AB (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001BC8B8AB)

HSP 1 Score: 128 bits (321), Expect = 7.650e-33
Identity = 68/155 (43.87%), Postives = 101/155 (65.16%), Query Frame = 1
Query:   28 WKVVDRPKGKTVLGTKTVFKRKVGQDGRVE-KYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYR--DSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            WK+ + PKGK  +G K VF +K G   +V+ +YK R VAKG+ Q +GI Y E  SP    SSIR+ LA++AQLD E  Q+DV+ AFL  ++ EE+Y+  P+G++     N V +L+K++YGL  +   W K+F   ++ +G+KRS+ D CV+ RK
Sbjct:  156 WKLANLPKGKKAIGCKWVFAKKEGFPNQVDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIMLALVAQLDLELVQMDVKTAFLHGNLEEEIYMTQPEGFKVAGKENMVCKLEKSLYGLKQSSRQWYKRFDEFMLRQGYKRSKYDHCVYLRK 310          
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Match: A0A2N9FVQ5_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FVQ5_FAGSY)

HSP 1 Score: 132 bits (331), Expect = 1.260e-32
Identity = 68/164 (41.46%), Postives = 98/164 (59.76%), Query Frame = 1
Query:    1 MDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSP---NQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKRSQADPCVFWRK 483
            +D  +  G W +VD P GK+ +G K V+K K   DG V++YK R VAKGF Q  GI Y+E+ +P    SS+R  +AV A   W   Q+DV+ AFL  ++TEE+Y++LP G+   P   ++V RL++A+YGL  A   W  KF   +   GF  S  D  +F+R+
Sbjct:  301 LDALLKTGTWDLVDLPAGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFAPVARLSSVRTLIAVSASRHWPLFQMDVKNAFLNGELTEEVYMQLPPGFSQPPGFSHKVCRLRRALYGLKQAPRAWFAKFSSTISQHGFSASSYDSALFFRR 464          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig87.20065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6ENF5_9HEMI1.660e-3543.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6LQ49_TENMO1.290e-3342.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6HDY0_TENMO2.110e-3342.76Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A2R6QI23_ACTCC2.650e-3345.39Endonuclease (Fragment) n=1 Tax=Actinidia chinensi... [more]
A0A8J6HGL1_TENMO2.970e-3342.76Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J6L9T5_TENMO3.010e-3342.76Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6HMR3_TENMO5.290e-3342.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GYH9_9APHY5.470e-3341.29Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
UPI001BC8B8AB7.650e-3343.87hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A2N9FVQ5_FAGSY1.260e-3241.46Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig87contigF-serratus_M_contig87:498657..499142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue8.8e-28
Seed eggNOG ortholog164328.Phyra80289
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHNV@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932545.724952-CDS-F-serratus_M_contig87:498656..4991421622932545.724952-CDS-F-serratus_M_contig87:498656..499142Fucus serratus maleCDSF-serratus_M_contig87 498657..499142 +
1690964359.0407455-CDS-F-serratus_M_contig87:498656..4991421690964359.0407455-CDS-F-serratus_M_contig87:498656..499142Fucus serratus maleCDSF-serratus_M_contig87 498657..499142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig87.20065.1prot_F-serratus_M_contig87.20065.1Fucus serratus malepolypeptideF-serratus_M_contig87 498657..499142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig87.20065.1

>prot_F-serratus_M_contig87.20065.1 ID=prot_F-serratus_M_contig87.20065.1|Name=mRNA_F-serratus_M_contig87.20065.1|organism=Fucus serratus male|type=polypeptide|length=162bp
MDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGF
RQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVT
EELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGFKR
SQADPCVFWRKH
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mRNA from alignment at F-serratus_M_contig87:498657..499142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig87.20065.1 ID=mRNA_F-serratus_M_contig87.20065.1|Name=mRNA_F-serratus_M_contig87.20065.1|organism=Fucus serratus male|type=mRNA|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig87:498657..499142+ (Fucus serratus male)
ATGGACGGCCAGATTGCGCGTGGTGTATGGAAGGTCGTCGATCGACCCAA AGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAACGGAAGGTCGGCC AGGATGGCCGTGTAGAAAAATACAAGTGCCGCTTCGTGGCCAAGGGTTTC CGCCAGATCAAGGGGATTCATTACCAAGAGTCATCGTCGCCGACACCTAC ACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCAGTTGGACTGGG AGGGGCGGCAGCTTGACGTAGAAATGGCGTTTCTCGAGGCGGATGTTACG GAGGAGCTATACGTTGAGCTCCCCGATGGGTATCGCGACTCGCCGAATCA GGTTGGACGACTGCAGAAGGCCATGTACGGTCTGATGCACGCCGGACTAC TGTGGTCGAAGAAATTCGGCGGAGAGTTGATAGCGAAGGGGTTCAAGAGG TCCCAAGCCGATCCCTGTGTGTTCTGGCGGAAGCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig87:498657..499142+

>mRNA_F-serratus_M_contig87.20065.1 ID=mRNA_F-serratus_M_contig87.20065.1|Name=mRNA_F-serratus_M_contig87.20065.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig87:498657..499142+ (Fucus serratus male)
ATGGACGGCCAGATTGCGCGTGGTGTATGGAAGGTCGTCGATCGACCCAA
AGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAACGGAAGGTCGGCC
AGGATGGCCGTGTAGAAAAATACAAGTGCCGCTTCGTGGCCAAGGGTTTC
CGCCAGATCAAGGGGATTCATTACCAAGAGTCATCGTCGCCGACACCTAC
ACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCAGTTGGACTGGG
AGGGGCGGCAGCTTGACGTAGAAATGGCGTTTCTCGAGGCGGATGTTACG
GAGGAGCTATACGTTGAGCTCCCCGATGGGTATCGCGACTCGCCGAATCA
GGTTGGACGACTGCAGAAGGCCATGTACGGTCTGATGCACGCCGGACTAC
TGTGGTCGAAGAAATTCGGCGGAGAGTTGATAGCGAAGGGGTTCAAGAGG
TCCCAAGCCGATCCCTGTGTGTTCTGGCGGAAGCATATGGACGGCCAGAT
TGCGCGTGGTGTATGGAAGGTCGTCGATCGACCCAAAGGAAAAACCGTAC
TCGGCACCAAGACCGTTTTTAAACGGAAGGTCGGCCAGGATGGCCGTGTA
GAAAAATACAAGTGCCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGG
GATTCATTACCAAGAGTCATCGTCGCCGACACCTACACAGTCGAGCATCC
GGATGGCGCTGGCGGTGATGGCCCAGTTGGACTGGGAGGGGCGGCAGCTT
GACGTAGAAATGGCGTTTCTCGAGGCGGATGTTACGGAGGAGCTATACGT
TGAGCTCCCCGATGGGTATCGCGACTCGCCGAATCAGGTTGGACGACTGC
AGAAGGCCATGTACGGTCTGATGCACGCCGGACTACTGTGGTCGAAGAAA
TTCGGCGGAGAGTTGATAGCGAAGGGGTTCAAGAGGTCCCAAGCCGATCC
CTGTGTGTTCTGGCGGAAGCAT
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