mRNA_F-serratus_M_contig831.19710.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig831.19710.1
Unique NamemRNA_F-serratus_M_contig831.19710.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.950e-45
Identity = 85/155 (54.84%), Postives = 108/155 (69.68%), Query Frame = -3
Query:    1 VDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETR-MDVTKAVYKEKMLNDVFPAIKRMWPGGDRNVLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 462
            +DEK F+  K GQRYY  EGE  P+ +VQHKSH+ KVMFLAAV RPR D+  +R FDGKIGI+PFT Q AA+RN RN AAGTM T  ++V + +YK K+ N+VFP I+  +P     +  QQ+NAP H+  +DPD+VAA       I L+NQPPN
Sbjct:   60 LDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPI-IFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPN 212          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: UPI00052FDC9E (uncharacterized protein LOC100833420 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FDC9E)

HSP 1 Score: 161 bits (407), Expect = 6.100e-45
Identity = 84/160 (52.50%), Postives = 105/160 (65.62%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETRM--DVTKAVYKEKMLNDVFPAIKRMWPGGDRN--VLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            + +DEK F+  K  Q++YL   EE P+   Q K  I+KVMFLAAV RPR D   N  FDGKIGIFPF T+  A R+S NR  GTMET++   VTK V ++ ++N V PAIK  WP  DR   +++QQDNA  H    DP+ VAA TSDG++IRL  QPPN
Sbjct:   82 IYIDEKWFYRTKGTQKFYLANDEEDPLRTTQSKHFIEKVMFLAAVARPRFDVEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHISVHDPEFVAAATSDGYDIRLTCQPPN 241          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: UPI001D01A7AC (uncharacterized protein LOC123171070 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D01A7AC)

HSP 1 Score: 154 bits (390), Expect = 2.370e-41
Identity = 80/160 (50.00%), Postives = 103/160 (64.38%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETRM--DVTKAVYKEKMLNDVFPAIKRMWPGGDRN--VLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            + +DEK F+  +  Q YYL   EE P    Q K+ I+KVMFLAAV RPR D      FDGK+GI+PFT Q AA+R S+NR  GTM T++   VT+ V +E M+N + PAI+  WP  +R   + VQQDNA  H   DDP+ VAA  ++GW+IRL  QPPN
Sbjct:  128 IHIDEKWFYRSRGSQNYYLANDEEDPYRSTQSKNFIEKVMFLAAVARPRFDANGTMIFDGKLGIWPFTYQEAAKRKSKNRDVGTMVTKVLPAVTQNVVREYMINFLIPAIRARWPAAERGMPIYVQQDNAKTHIPLDDPEFVAAAQAEGWDIRLTCQPPN 287          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: UPI000D0E11B9 (uncharacterized protein LOC100837505 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0E11B9)

HSP 1 Score: 158 bits (399), Expect = 2.380e-41
Identity = 84/160 (52.50%), Postives = 106/160 (66.25%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETRM--DVTKAVYKEKMLNDVFPAIKRMWPGGDRN--VLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            + +DEK F+  K  Q++YL   EE P+   Q K  I+KVMFLAAV RPR D   N  FDGKIGIFPF T+  A R+S NR  GTMET++   VTK V ++ ++N V PAIK  WP  DR   +++QQDNA  H +  DP+ VAA TSDG++IRL  QPPN
Sbjct:  455 IYIDEKWFYRTKRTQKFYLA-NEEDPLRTTQSKHFIEKVMFLAAVARPRFDAEKNITFDGKIGIFPFVTEKPAERSSVNRPKGTMETKVLPTVTKEVSRDYLVNKVLPAIKEKWPEEDRGRPIIIQQDNAKTHILVHDPEFVAAATSDGFDIRLTCQPPN 613          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: UPI001D00E602 (uncharacterized protein LOC123121182 n=2 Tax=Triticinae TaxID=1648030 RepID=UPI001D00E602)

HSP 1 Score: 154 bits (390), Expect = 3.720e-41
Identity = 80/160 (50.00%), Postives = 103/160 (64.38%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETRM--DVTKAVYKEKMLNDVFPAIKRMWPGGDRN--VLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            + +DEK F+  +  Q YYL   EE P    Q K+ I+KVMFLAAV RPR D      FDGK+GI+PFT Q AA+R S+NR  GTM T++   VT+ V +E M+N + PAI+  WP  +R   + VQQDNA  H   DDP+ VAA  ++GW+IRL  QPPN
Sbjct:  204 IHIDEKWFYRSRGSQNYYLANDEEDPYRSTQSKNFIEKVMFLAAVARPRFDANGTMIFDGKLGIWPFTYQEAAKRKSKNRDVGTMVTKVLPAVTQNVVREYMINFLIPAIRARWPAAERGMPIYVQQDNAKTHIPLDDPEFVAAAQAEGWDIRLTCQPPN 363          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: A0A6P6UZX5_COFAR (uncharacterized protein LOC113715904 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6UZX5_COFAR)

HSP 1 Score: 148 bits (374), Expect = 6.260e-41
Identity = 76/160 (47.50%), Postives = 104/160 (65.00%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETR--MDVTKAVYKEKMLNDVFPAIKRMWPGGD--RNVLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            V +DEK F+  K  ++YYL   EE P+   + K  I KVMFLAAV RPR D   N++FDGKIGIFPF  +  A+RNS+NR AGT+ET+  + VTK VY+  ++++V PAI+  WP  +    + +QQDNA  H    D + + A T +G++IRL  QPPN
Sbjct:   62 VHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSNVISPIFIQQDNAKPHIDPMDVEFIEAATREGFDIRLSFQPPN 221          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: A0A6P6X993_COFAR (uncharacterized protein LOC113741020 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6X993_COFAR)

HSP 1 Score: 150 bits (379), Expect = 8.770e-41
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETR--MDVTKAVYKEKMLNDVFPAIKRMWPGGD--RNVLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            V +DEK F+  K  ++YYL   EE P+   + K  I KVMFLAAV RPR D   N++FDGKIGIFPF  +  A+RNS+NR AGT+ET+  + VTK VY+  ++++V PAI+  WP  D    + +QQDNA  H    D + + A T +G++IRL  QPPN
Sbjct:   62 VHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPHIDPMDVEFIEAATREGFDIRLSFQPPN 221          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: A0A6P6VBP7_COFAR (uncharacterized protein LOC113715216 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VBP7_COFAR)

HSP 1 Score: 150 bits (379), Expect = 1.300e-40
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETR--MDVTKAVYKEKMLNDVFPAIKRMWPGGD--RNVLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            V +DEK F+  K  ++YYL   EE P+   + K  I KVMFLAAV RPR D   N++FDGKIGIFPF  +  A+RNS+NR AGT+ET+  + VTK VY+  ++++V PAI+  WP  D    + +QQDNA  H    D + + A T +G++IRL  QPPN
Sbjct:   79 VHIDEKWFYMTKESEKYYLHPEEEHPMRTCRSKKFIVKVMFLAAVARPRFDCSRNKHFDGKIGIFPFAFKEPAKRNSKNRVAGTLETKPILSVTKEVYRRCLIDNVLPAIRAKWPQSDVISPIFIQQDNAKPHIDPMDVEFIEAATREGFDIRLSFQPPN 238          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: UPI000E6FC8C0 (uncharacterized protein LOC113311561 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6FC8C0)

HSP 1 Score: 149 bits (376), Expect = 1.340e-40
Identity = 77/160 (48.12%), Postives = 101/160 (63.12%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETR--MDVTKAVYKEKMLNDVFPAIKRMWPGGDRN--VLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            V +DEK F+  K  Q+YYL   E+ P+   + K  I KVMFLA V RPR D+ NN  F GKIGIFPFT Q  A+RNS+NR AGTMET+  + VTK V +  ++N VFPA++  WP       + +QQDNA  H   +D + +   + DG++IRL  QPPN
Sbjct:    5 VHIDEKWFYMTKESQKYYLLPEEDEPLRSCKSKCFITKVMFLAVVARPRYDSANNEEFSGKIGIFPFTFQEPAQRNSKNRTAGTMETKEILSVTKDVIRSCLINKVFPAMRSKWPRSSNMDPIFIQQDNARPHINPNDQEFLEDASKDGFDIRLSFQPPN 164          
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Match: A0A8I6X5T8_HORVV (Uncharacterized protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X5T8_HORVV)

HSP 1 Score: 150 bits (379), Expect = 2.390e-40
Identity = 77/160 (48.12%), Postives = 102/160 (63.75%), Query Frame = -3
Query:    1 VMVDEKCFFFKKNGQRYYLREGEEAPVSRVQHKSHIQKVMFLAAVGRPRRDTVNNRNFDGKIGIFPFTTQVAARRNSRNRAAGTMETRM--DVTKAVYKEKMLNDVFPAIKRMWPGGDRN--VLVQQDNAPAHKIADDPDIVAAGTSDGWNIRLLNQPPN 468
            + +DEK F+  +  Q YYL   EE P    Q K+ I+KVMFLAAV RPR D      FDGK+GI+PFT Q  A+R ++NR AGTM T++   VT+ V +E M+N + PAI+  WP  +    + +QQDNA  H   DDP+ VAA  ++GW+IRL  QPPN
Sbjct:  106 IHIDEKWFYRSRGSQNYYLANDEEDPYRSTQSKNFIEKVMFLAAVARPRFDGNGTMTFDGKLGIWPFTYQEPAKRKNKNRDAGTMVTKVLPAVTQNVVREYMINFLIPAIRARWPAAEHGMPIYLQQDNAKTHIPLDDPEFVAAAQAEGWDIRLTCQPPN 265          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig831.19710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWV2_9PHAE1.950e-4554.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00052FDC9E6.100e-4552.50uncharacterized protein LOC100833420 n=1 Tax=Brach... [more]
UPI001D01A7AC2.370e-4150.00uncharacterized protein LOC123171070 n=1 Tax=Triti... [more]
UPI000D0E11B92.380e-4152.50uncharacterized protein LOC100837505 n=1 Tax=Brach... [more]
UPI001D00E6023.720e-4150.00uncharacterized protein LOC123121182 n=2 Tax=Triti... [more]
A0A6P6UZX5_COFAR6.260e-4147.50uncharacterized protein LOC113715904 n=1 Tax=Coffe... [more]
A0A6P6X993_COFAR8.770e-4148.13uncharacterized protein LOC113741020 n=2 Tax=Coffe... [more]
A0A6P6VBP7_COFAR1.300e-4048.13uncharacterized protein LOC113715216 n=4 Tax=Coffe... [more]
UPI000E6FC8C01.340e-4048.13uncharacterized protein LOC113311561 n=1 Tax=Papav... [more]
A0A8I6X5T8_HORVV2.390e-4048.13Uncharacterized protein n=2 Tax=Hordeum vulgare su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig831contigF-serratus_M_contig831:211362..212002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size641
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig831.19710.1prot_F-serratus_M_contig831.19710.1Fucus serratus malepolypeptideF-serratus_M_contig831 211387..211779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932466.2964213-UTR-F-serratus_M_contig831:211361..2113861622932466.2964213-UTR-F-serratus_M_contig831:211361..211386Fucus serratus maleUTRF-serratus_M_contig831 211362..211386 +
1690964322.3940845-UTR-F-serratus_M_contig831:211361..2113861690964322.3940845-UTR-F-serratus_M_contig831:211361..211386Fucus serratus maleUTRF-serratus_M_contig831 211362..211386 +
1622932466.3301492-UTR-F-serratus_M_contig831:211779..2120021622932466.3301492-UTR-F-serratus_M_contig831:211779..212002Fucus serratus maleUTRF-serratus_M_contig831 211780..212002 +
1690964322.4245532-UTR-F-serratus_M_contig831:211779..2120021690964322.4245532-UTR-F-serratus_M_contig831:211779..212002Fucus serratus maleUTRF-serratus_M_contig831 211780..212002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932466.312086-CDS-F-serratus_M_contig831:211386..2117791622932466.312086-CDS-F-serratus_M_contig831:211386..211779Fucus serratus maleCDSF-serratus_M_contig831 211387..211779 +
1690964322.406222-CDS-F-serratus_M_contig831:211386..2117791690964322.406222-CDS-F-serratus_M_contig831:211386..211779Fucus serratus maleCDSF-serratus_M_contig831 211387..211779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig831.19710.1

>prot_F-serratus_M_contig831.19710.1 ID=prot_F-serratus_M_contig831.19710.1|Name=mRNA_F-serratus_M_contig831.19710.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MFQPSDVPAATMSGSSAILCAGALSCCTKTFRSPPGHMRLMAGNTSFSIF
SLYTAFVTSILVSIVPAARFLLFRRAATCVVNGKMPIFPSKLRLFTVSLR
GRPTAARNMTFCMCDLCCTLLTGASSPSRR*
back to top

mRNA from alignment at F-serratus_M_contig831:211362..212002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig831.19710.1 ID=mRNA_F-serratus_M_contig831.19710.1|Name=mRNA_F-serratus_M_contig831.19710.1|organism=Fucus serratus male|type=mRNA|length=641bp|location=Sequence derived from alignment at F-serratus_M_contig831:211362..212002+ (Fucus serratus male)
GTTAGGCGGCTGGTTGAGTAGCCTGATGTTCCAACCGTCGGACGTACCCG CCGCCACAATGTCCGGGTCGTCGGCGATTTTGTGCGCGGGAGCATTGTCC TGTTGCACTAAGACGTTTCGGTCCCCACCCGGCCACATGCGCTTGATGGC CGGGAACACGTCGTTTAGCATCTTTTCCTTGTACACGGCCTTTGTCACAT CCATCCTGGTTTCCATCGTTCCCGCAGCCCGGTTCCTGCTGTTCCGTCGG GCTGCCACCTGCGTCGTGAACGGGAAGATGCCGATCTTCCCGTCGAAATT GCGGTTGTTCACCGTGTCTCTGCGCGGACGACCGACGGCTGCAAGAAACA TGACCTTCTGTATGTGTGATTTATGCTGCACCCTGCTCACAGGTGCTTCT TCGCCTTCACGAAGGTAGTACCTCTGTCCGTTCTTCTTAAAAAAAAAACA TTTTTCGTCCACCATGACTTATGTTCTCCATGGGGTCGAACTTCCGGATG CCACCATGCCCCGTGCGTACAAACTGAAGCGCCCAGTTCAGCCTCCGTAT TTTTCCTGAATCCGTGAGGATCGGCTTGAGAAATCGGGACGCCGCACGCA AGCCAAGCTTCTTGAGGTTTTGCTGGAGCCCTTGCTGCGTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig831:211362..212002+

>mRNA_F-serratus_M_contig831.19710.1 ID=mRNA_F-serratus_M_contig831.19710.1|Name=mRNA_F-serratus_M_contig831.19710.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig831:211362..212002+ (Fucus serratus male)
ATGTTCCAACCGTCGGACGTACCCGCCGCCACAATGTCCGGGTCGTCGGC
GATTTTGTGCGCGGGAGCATTGTCCTGTTGCACTAAGACGTTTCGGTCCC
CACCCGGCCACATGCGCTTGATGGCCGGGAACACGTCGTTTAGCATCTTT
TCCTTGTACACGGCCTTTGTCACATCCATCCTGGTTTCCATCGTTCCCGC
AGCCCGGTTCCTGCTGTTCCGTCGGGCTGCCACCTGCGTCGTGAACGGGA
AGATGCCGATCTTCCCGTCGAAATTGCGGTTGTTCACCGTGTCTCTGCGC
GGACGACCGACGGCTGCAAGAAACATGACCTTCTGTATGTGTGATTTATG
CTGCACCCTGCTCACAGGTGCTTCTTCGCCTTCACGAAGGTAGATGTTCC
AACCGTCGGACGTACCCGCCGCCACAATGTCCGGGTCGTCGGCGATTTTG
TGCGCGGGAGCATTGTCCTGTTGCACTAAGACGTTTCGGTCCCCACCCGG
CCACATGCGCTTGATGGCCGGGAACACGTCGTTTAGCATCTTTTCCTTGT
ACACGGCCTTTGTCACATCCATCCTGGTTTCCATCGTTCCCGCAGCCCGG
TTCCTGCTGTTCCGTCGGGCTGCCACCTGCGTCGTGAACGGGAAGATGCC
GATCTTCCCGTCGAAATTGCGGTTGTTCACCGTGTCTCTGCGCGGACGAC
CGACGGCTGCAAGAAACATGACCTTCTGTATGTGTGATTTATGCTGCACC
CTGCTCACAGGTGCTTCTTCGCCTTCACGAAGGTAG
back to top