mRNA_F-serratus_M_contig826.19662.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig826.19662.1
Unique NamemRNA_F-serratus_M_contig826.19662.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 6.790e-54
Identity = 107/169 (63.31%), Postives = 126/169 (74.56%), Query Frame = 3
Query:   84 MSSPARRLLLGVCLVAQRSVSYHIPRAVPASPFSYARATSRSMG-IFTQSRRHGLHSSRVVMQAVT--MQETIESRLVEALSPVHLEVINESHMHSGPATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK 581
            M S  R+LLLG CL+A R+ ++H+P  V +S   + R+T    G   + S R    S+   M A +  MQETIE+RL EALSPVHLEVINESHMHSGPA ESHFKV+VVS++FEGK L+ARHRMVN LFA EMK   MHALSIQGKTP+QW+ EGHKVA SPPCMGGSK
Sbjct:    1 MMSTTRQLLLGACLIAGRTGAFHVP--VASSLSQHTRSTLAVAGKCNSASVRRRFRSAGFAMAAASGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGK-MHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 166          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 8.370e-39
Identity = 97/222 (43.69%), Postives = 133/222 (59.91%), Query Frame = 2
Query: 1739 LVMFNTAWVTTSTAPIAAAGLLGQPLGRAMVATASSHAIFALSKFTLAYGAMNVGSDAARGPAY-PSSRRPKSTAPPPRPSVGRPRTLLPLSRTRAPVPRLPPM--GTATGADTTNSITLQVRRSAKSVPRVWLMVVTALGGPGVGTVASLATHRLGLISIPAVWSSVSRGSALGTLISASLCHGGAGTRWAARWAVFQGIFGVFLSFILSLEVLLAVSVIN 2395
            ++++ TAW+TTS  P+AAAG++GQPL RA+VAT ++HA FA  KF+LA  AM+        P Y P  RR  +  P P P+  R        R +   P L P   G            +QVRRSA+SVP++WLM +TA GGP +G V S    + GL+++PA  SS+SRGS +  L++ +LC+GGAGT   ARWAVFQGI G   + +LS   L+ V + N
Sbjct:    1 MILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFP-----PVYAPPPRRHPNNKPTP-PTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVSAVPGTRIQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCN 216          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: A0A8J4ZH80_9CHEL (DNA-binding transcriptional regulator BolA n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4ZH80_9CHEL)

HSP 1 Score: 121 bits (304), Expect = 4.830e-29
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  273 VTMQETIESRLVEALSPVHLEVINESHMHSGPATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK 581
            + +Q TIE +L E L P  L+VINES+MHSGPATESHFKVVVVS KFEGK L+ARHRM+N   A E+ S  +HAL++   TP ++ E+  KVA SP C GGSK
Sbjct:    1 MNIQNTIEQKLTETLDPEVLDVINESNMHSGPATESHFKVVVVSNKFEGKMLIARHRMINAALAEELNS--IHALALHTMTPDEYFEKSGKVADSPQCEGGSK 101          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: A0A4R1EY83_9GAMM (BolA protein n=1 Tax=Cocleimonas flava TaxID=634765 RepID=A0A4R1EY83_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 6.580e-29
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  273 VTMQETIESRLVEALSPVHLEVINESHMHSGPATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK 581
            + MQ TIE +L E L+P  LEVINES+MHSGPATESHFKV+ VS+ FEGK L+ARHRM+N   A E++   +HAL++   TPS++ E+  KVA SP C GGSK
Sbjct:    1 MNMQTTIEEKLTETLAPEVLEVINESYMHSGPATESHFKVIAVSDAFEGKMLIARHRMINAALADELQQ--IHALALHTMTPSEYFEKAGKVADSPQCEGGSK 101          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: B3RW48_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RW48_TRIAD)

HSP 1 Score: 119 bits (298), Expect = 3.510e-28
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:  282 QETIESRLVEALSPVHLEVINESHMHSGP-ATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGS 578
            + +I ++L E L P+HL+VINES+MH+ P  +E+HFKV++VS+ F GKSL+ RHRMVNEL A E+ S ++HALSIQ KT  QW++  H +  SPPC+GGS
Sbjct:    5 ETSIHNKLSERLKPIHLDVINESNMHNVPKGSETHFKVIIVSDLFNGKSLLQRHRMVNELLAEEL-SGSVHALSIQAKTSQQWEDSNHHITKSPPCLGGS 103          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: UPI001864A9EA (bolA-like protein 1 n=1 Tax=Colossoma macropomum TaxID=42526 RepID=UPI001864A9EA)

HSP 1 Score: 119 bits (298), Expect = 1.200e-27
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = 3
Query:  183 SYARATSRSMGIFTQSRRHGLHSSRVVMQAVTMQETIESRLVEALSPVHLEVINESHMHS-GPATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK 581
            S A A SR +  F  S   G H          ++ +I ++L +AL P HLEV+NESHMH+  P +ESHF+V+VVS +FEG SL+ RHR+VNE    E+ SS++HAL+IQ KTP QW  +   +A SPPC+GGSK
Sbjct:    9 SLALALSRQLSHFRPSMEPGAHRP--------VETSIRTKLTQALQPEHLEVLNESHMHAVPPGSESHFRVLVVSPRFEGLSLLQRHRLVNEALREEL-SSSVHALAIQAKTPQQWSSD-PSLAKSPPCLGGSK 132          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: UPI00109BCE19 (bolA-like protein DDB_G0274169 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BCE19)

HSP 1 Score: 119 bits (298), Expect = 1.200e-27
Identity = 61/117 (52.14%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  240 GLHSSRV---VMQAVTMQETIESRLVEALSPVHLEVINESHMHSGP-ATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGS 578
            GL SS+     +Q +++Q TI  +L +   P H+EVINES+MH+ P  +E+HFKVVVVS  F+ K L+ RHRMVN++   E++S  +HALSIQ KTP+QW+  GHKV  SPPC+GG+
Sbjct:   29 GLKSSQFCTSTVQRMSVQATITDKLTKKFQPQHMEVINESYMHNVPKGSETHFKVVVVSALFQDKPLIQRHRMVNDVLKNELESG-VHALSIQAKTPTQWEASGHKVNMSPPCLGGA 144          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: A0A2T6NR61_9GAMM (BolA family transcriptional regulator n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2T6NR61_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 1.260e-27
Identity = 56/105 (53.33%), Postives = 79/105 (75.24%), Query Frame = 3
Query:  276 TMQETIESRLVEALSPVHLEVINESHMHSGP-ATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK*G 587
            T+QETI+++L  A +P+HLEV+NESHMH+ P  +ESHFKVV+VSE F+G+ L+ RHR VN++   E++   +HAL++   TP  W ++G KVA SPPC+GGS  G
Sbjct:    3 TIQETIQTKLASAFAPLHLEVVNESHMHNVPEGSESHFKVVLVSEAFKGEKLINRHRQVNKVLTEELQGG-VHALALHTLTPEDWFDQGGKVADSPPCLGGSNRG 106          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: A0A553Q4D8_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553Q4D8_9TELE)

HSP 1 Score: 119 bits (298), Expect = 1.520e-27
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 3
Query:  279 MQETIESRLVEALSPVHLEVINESHMHS-GPATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK 581
            ++ T+ ++L +ALSP HLEVINESHMH+  P +ESHF+VVVVS +FEG SL+ RHR+VN+    E+ SS +HAL+IQ KTP QW  +  K+  SPPCMGGSK
Sbjct:   37 IETTVRTKLTQALSPEHLEVINESHMHAVPPGSESHFRVVVVSPRFEGLSLLQRHRLVNDALKEEL-SSCIHALAIQAKTPQQWSSD-PKLGKSPPCMGGSK 136          
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Match: A0A2M7G1L8_9BACT (Transcriptional regulator n=1 Tax=bacterium (Candidatus Blackallbacteria) CG17_big_fil_post_rev_8_21_14_2_50_48_46 TaxID=2014261 RepID=A0A2M7G1L8_9BACT)

HSP 1 Score: 117 bits (293), Expect = 1.660e-27
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  279 MQETIESRLVEALSPVHLEVINESHMHSGPATESHFKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDEEGHKVAASPPCMGGSK 581
            +Q  +ESRL EAL+P+HLEV+NESH HSGPA +SHFKV+ VS+ FEG++ VARHR +N L A ++    +HALS+Q  TPS+W         SPPC GGSK
Sbjct:    3 VQHDLESRLSEALAPLHLEVLNESHKHSGPAGDSHFKVIAVSDHFEGQNRVARHRQINALLA-DLIGQPIHALSLQLFTPSEWAARAEVALPSPPCRGGSK 102          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig826.19662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTH4_ECTSI6.790e-5463.31BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
D8LTH3_ECTSI8.370e-3943.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J4ZH80_9CHEL4.830e-2960.19DNA-binding transcriptional regulator BolA n=1 Tax... [more]
A0A4R1EY83_9GAMM6.580e-2959.22BolA protein n=1 Tax=Cocleimonas flava TaxID=63476... [more]
B3RW48_TRIAD3.510e-2856.00Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
UPI001864A9EA1.200e-2749.25bolA-like protein 1 n=1 Tax=Colossoma macropomum T... [more]
UPI00109BCE191.200e-2752.14bolA-like protein DDB_G0274169 isoform X1 n=2 Tax=... [more]
A0A2T6NR61_9GAMM1.260e-2753.33BolA family transcriptional regulator n=2 Tax=Gamm... [more]
A0A553Q4D8_9TELE1.520e-2758.82Uncharacterized protein n=1 Tax=Danionella translu... [more]
A0A2M7G1L8_9BACT1.660e-2756.44Transcriptional regulator n=1 Tax=bacterium (Candi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig826contigF-serratus_M_contig826:155553..164042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue7.9e-48
Seed eggNOG ortholog2880.D8LTH4
Preferred namebola1
KEGG koko:K22066
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
Ec32 ortholog descriptionBolA protein
Ec32 orthologEc-02_005630.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons3
Model size2600
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig826.19662.1prot_F-serratus_M_contig826.19662.1Fucus serratus malepolypeptideF-serratus_M_contig826 155636..162026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932451.903431-UTR-F-serratus_M_contig826:155552..1556351622932451.903431-UTR-F-serratus_M_contig826:155552..155635Fucus serratus maleUTRF-serratus_M_contig826 155553..155635 +
1690964315.3982067-UTR-F-serratus_M_contig826:155552..1556351690964315.3982067-UTR-F-serratus_M_contig826:155552..155635Fucus serratus maleUTRF-serratus_M_contig826 155553..155635 +
1622932451.9786181-UTR-F-serratus_M_contig826:162026..1640421622932451.9786181-UTR-F-serratus_M_contig826:162026..164042Fucus serratus maleUTRF-serratus_M_contig826 162027..164042 +
1690964315.4434972-UTR-F-serratus_M_contig826:162026..1640421690964315.4434972-UTR-F-serratus_M_contig826:162026..164042Fucus serratus maleUTRF-serratus_M_contig826 162027..164042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932451.9167771-CDS-F-serratus_M_contig826:155635..1559411622932451.9167771-CDS-F-serratus_M_contig826:155635..155941Fucus serratus maleCDSF-serratus_M_contig826 155636..155941 +
1690964315.4134247-CDS-F-serratus_M_contig826:155635..1559411690964315.4134247-CDS-F-serratus_M_contig826:155635..155941Fucus serratus maleCDSF-serratus_M_contig826 155636..155941 +
1622932451.938354-CDS-F-serratus_M_contig826:161501..1616041622932451.938354-CDS-F-serratus_M_contig826:161501..161604Fucus serratus maleCDSF-serratus_M_contig826 161502..161604 +
1690964315.4226887-CDS-F-serratus_M_contig826:161501..1616041690964315.4226887-CDS-F-serratus_M_contig826:161501..161604Fucus serratus maleCDSF-serratus_M_contig826 161502..161604 +
1622932451.9586964-CDS-F-serratus_M_contig826:161934..1620261622932451.9586964-CDS-F-serratus_M_contig826:161934..162026Fucus serratus maleCDSF-serratus_M_contig826 161935..162026 +
1690964315.4324703-CDS-F-serratus_M_contig826:161934..1620261690964315.4324703-CDS-F-serratus_M_contig826:161934..162026Fucus serratus maleCDSF-serratus_M_contig826 161935..162026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig826.19662.1

>prot_F-serratus_M_contig826.19662.1 ID=prot_F-serratus_M_contig826.19662.1|Name=mRNA_F-serratus_M_contig826.19662.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MSSPARRLLLGVCLVAQRSVSYHIPRAVPASPFSYARATSRSMGIFTQSR
RHGLHSSRVVMQAVTMQETIESRLVEALSPVHLEVINESHMHSGPATESH
FKVVVVSEKFEGKSLVARHRMVNELFAAEMKSSAMHALSIQGKTPSQWDE
EGHKVAASPPCMGGSK*
back to top

mRNA from alignment at F-serratus_M_contig826:155553..164042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig826.19662.1 ID=mRNA_F-serratus_M_contig826.19662.1|Name=mRNA_F-serratus_M_contig826.19662.1|organism=Fucus serratus male|type=mRNA|length=8490bp|location=Sequence derived from alignment at F-serratus_M_contig826:155553..164042+ (Fucus serratus male)
ACAAACAGTAGATTAACGGACACAATACACGACTCGGCTCGCGCGGCGAA GAAATTTGCGTAGTATATTGTACCCCGTGCATCATGAGTTCCCCTGCGCG GCGACTGCTGCTTGGTGTGTGCCTTGTCGCCCAACGTTCTGTTTCGTACC ACATACCGCGCGCGGTTCCTGCTTCTCCATTTTCGTACGCTCGCGCAACG TCCCGTTCGATGGGCATCTTCACGCAATCTCGGCGGCACGGCCTTCACTC TAGCAGAGTTGTGATGCAAGCGGTAACAATGCAAGAAACAATTGAGAGTA GACTGGTGGAGGCGCTATCGCCGGTGCACCTGGAGGTGATAAACGAGAGC CACATGCATTCTGGGCCCGCGACGGAGAGTCACTTCAAGGTATGAGTACG CAGGTCTGAAGTAGTAAGTACAGTAGTCTGTCGCACAGTAGCAGTGCGTA CGAGTACTAGTAGGAACTAGCCTGACTCGTCGTTGTTGTCCGAAGAAAAA TCTGAACCCTTCTGGATCATCCCCCAGTCAGGGGGGGGGAATGAACGTTT AGATGGGATCATGGGCTGCAAAGATTTTTCCTTACTAAAAAACAAAAACA AAAAAAAGCATGCCCAACATGTGTGTGTGTGTGTGTGTGTGTCTATTTAT TAAATTGCACATAACCGCGCAATCCGGGCCTGTCATCCTTGTCATTCTAT GCCGCTCGCATTGATCCTCCCGAGGGTGTGTGTGTGTGTGTATTTATTAA ATTGCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCC ACTCGTATTGATCCTCCCGAGGGGGGGTCAATGATACTTATTGCAGTGTG TGTGTGTGTGTGTATATTTATTAAATTACACGTACCCGCGCAATCCTGCC CCGTCATCCtaataaTAGTCATTATTATATGCCACTCGCATTGATCCTCC CAAAGGGAAATCAATGATACTTATCACTTATTACGAAAACCTCTGATCAG ACGCGACGAAGGGGACACATTCTCTCAACTAGTACAGCCCCTACTTGAGC CCTGAGTGCATTGTGCTACAGTGTTGTGTGTGTGTGTGTGTGTGTGTGTG TGTATGTTGTCATCCCATTTATTCTGGACGTCAGGCTTGTGGACGTACCA GCCTGGGTCACACAGGAGGAAGGTCAAGCAGGATTTCTCCACCTTCCTTC TAGTAAAGTATAACATAtGTGTGTGTGTGTGTTTTCTTCCCACTTATTCT GGGCATCAAGTTCGTTGGGCGTACCAGCTGGGGTCACACAGGAAGGTTAC ACATGATTTCTCATCCACCTTCCTTCTGTGGAGCTTGCCTTATTTTTTCT CGCGAGAAGGATTCAGCCGCTCCTTTTCCTCGTTGACAGTGAAGTCGAAT CGAATTTTGTGTACTAAAGGCCCAATCTTATGCGAGATCGAAAACGAAAA ATGCCAGATCGGAAATCGGCCGTTTTCGATCGGGTAAAATCGTTTTCGTT CCGGAAACAAAAGCTATCTCACGTAAGATCGAGAAATCGGCTAGGTTTTA ATTGCGAGGTTAGCGGCATGCCGACGGTGGGGGTCATCAGGAATTTGAAT ATACATGTACTGTACTCACACAGCTGCGTCTAGAGCTGTTTAGGGTACAG CTTCTCCTGTACCAGGTACAAATGTACTGGTTGGATATATTTTTTCGTGC ACGTACGTTCAACCAGCCAACAACGCGATTCTTTGATAGCTTCTTTTATT TACAGCAGTGCGAATTGTTCGCAGCCACGATGTACACCAGCACCAGCCCT TGTACTGCTGCTGCTGCTGCTGTCGCTGTCGATTGGGTATGGTAGCAGTA TTCGTTGCCGCCAATACTAATAATACGATAACTATAATAGTCAAGGCTTG TTCGTCTACTCGATCGCTTCAGCTATCATACCCATGGCTTCTTCGTTCGC ATGTTCGGTTGCCGACAGCTCCCACCATGTACGTTTGTACGAGAACATAA TATATTAGAGTATACCGGTACTTAATAAACTTTACATAAGATCTAATCTG CGCACCATAAAACAAGCATTCGTTTGTAGATATTTCCCCTGTGATATGGA CATATTACTGGCACTAATACTCCATGGATCGAGGGCAGTACATGGGCTGG TTCACGTGGCGACAGCATTACCGGGGCTGATTAACTGCGTTGTAAAAGCG CGCTGTCAAAAGAGTCGCGGTTGCTGCTTGAACGCGCGTCGGTGGTGACC ACTGCCACAGAACTATGCATGTCAAAAGCAGCACCTGGTATTATCCACAC CAGAGTCAACTATCATGCCTTTCGATGTTCTTGTGTGCTTTTGTGGTCTG AGCCTTAATGCTCTGGTGTGTGTGTTAATGGGAAGTCTCTTTGGCCGAGA ACGGTCTGTTACGGAAGAGGTAATGCTGGGTGGTCAAAGGATTATTGCAT TGGATGCATTGAACCTCGTTGTATTATTGTCTCTCAATACCCCAACTCAT GGGCGTAGTCTACTCTTGTAATATATGCTCTCATAGACAACCGTACAACC AGTACAGTTGATTGAACAGGTACAACCGTAGAACCACAGAACTACCATAA AACTGAATCAGTGGGGTCTAAAATGAATAAATGGACGCTGCCGCGGAACT CGGGAGATACTCCGTAAGTAAGCACGAGATTCAGCCTGAGTATGGAGAAT GAGCAGGCTGACGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAA TTCTCAGGCACGAACGCGGGCAGGGAAATATTAACTTTCCCTGTTCAGCT GACCACGAGCAGGATTGGCAGCCGTACCCGGTTGATCCATACTCTTGCTA TGTGTGTGACCATACATACATGCGAAAGAACTCACCAACCTCCTAATTTA CGCCGCACGCATGTTGCTGTTCGGCGAGTAACCTAACCTTTCACGCTTTC ACGCTTTCATGTGTGTTGCCGTATCTCTCGTGTTTTCTCTTGGATTTTGT GAGTGGGCCATGCACACACACCTTGAGGTCGCGCTCGAAAACGCTAGATC GAAAAATGCTGCTCGGAAATCGTCAAAATTCGATCGCATAAGATAGTTTT TTTCTTCTAATCGAAAAATCCACATCGAAAAATGCCGTTTTCCGTTTTCG ATCTGCGTTTTCGATCTCGCATAAGGTAGGGTCTAACGAATTAATCGTTC TCCACTTCGTGGGCATTTTTTTTAGGAGAAATCCCGTTCGTGTGACGGTA CCGGGATTCGAACTCACGTCCCAACGTCAGAAGGTTTGGAGGTTGCCAAC TGAGCCACCGAGGCAAGAAGAACGATTGATTCGTTGGTTACACAAAACTC GACTTCACGGTCGACGAGGAAAAGGAACGGCTGAATATTTCTTGCGATAA AAATTAAGGCACGCAGCACAGAAGGAAGGGGAGAGATCCTGTGTGACCTT CCTCCTATGTGACCCCGGCTGGTGCGTCCACAAGTCTGACGTCCAGAATA AATGGAATGACAACACACACACACACAAAGACAAACACACAAAGACAAAA CCTCTTTAAGACATTTAATCGAGCTCCCCGATGATGTAACATTGAGTCAA CAGTATAATAGCCCAAAGCAAGCGGGTTCGTGGTAGTTCGCTCGCCCTTG TTGACTAGCCACGAGTGGCGCGACCTTGTATCCTCCAGGCGTTTGGTTTG CAGATGCCATGACGTCTTTCTCTGGTGTAACCTTTGTTTTTAAAGAAAAA TCAGAACGCACCTAGACCTTCTAGATTTGCTTCGTTTTCGTCTTGATGCT TTCGTTGAAGCCGCGGCCCTTCGTTCAATCGTCCTTCGATATGCAGGCGC CCCGATAGCCACATGTGTTTCTTTGTCGTTATTTTTGTTTGTTTGGAGAT GTCGCTTTTTCCGAGTATGGAGAGTATCATACGTCGTACGTCTTTCCTTC CGGATGATGTTTTTCTATCATACTATCATACTATCATACCTTGTGACCAC GGGCTGGATTTTTGACATCAGCTTGTGTGATAATTCAATCATATCAATAA TATAATGTCGGGAAGAAACCCACCGTTATACTCTACACTTACATTTAATC GCCATACAGGGACACCAAGAAAGCATAGACAAAAGACACGATGAGCTTGG ATTACAGCTCAATTTattacATTACATTACATTACATTACATTGGGTCTA TCAATAGGATCGGATGGGATGGGTGTCGATGAAGGATATCTCCTATCATA TAATATTCAAATCATGGATGGATGTACAGTAGAAATGATAATGGAAAATT GTCCAATAACTATTCCTACGGCACATAATTACAAGTACTGTAGCAATTAT GGTGTACCAGGTACCAATACAAATGAAGGAAACTTTACCGTGTTATCTAT TCGGTCCATGTTTGTTTGTAATTCACACTATAGTCTATATGTTATATTAC ATATTAATTTGTGACAGCAAGAGAAGTAAGAGATAGGACTATGACGGTTA TTACTATTAATAGCGGTATTATACTGGTATCATATAGTGTATATATACAT GCGTTTTTTGGGATTGAGAATTAGATCGAGAGGAGAGAGAGGATCACCGA CGTAGATGTCATGTCTTCAACATCATCCAGAAGTACGAGACATCGGTATT CACCTATTCACCTGAAAGGCTACAGTATAAAGTATATAGTATACAGTATA CCAAGAGCCGAAAAACAGTAGAGGGCTAGACTACAACAGTAATAGTAACA GAGAAGTGAGAGGCAGGTGGGCAGAAAACGCTCATATACCTGTCGTAATG CTACCCCTCGCCTGCTCCATAACACCAACTCTAAGTCAGCTAACAAAAGC CTCGCGAAGGCTTGACATGATAAAGCCAAAAGCACGCCTTCTTCTGGAGC AGCTCGAGGGCAAACCTCAATGAATGACAGATACGCGTAAGCGCTCATGA ATCCCCCTCCCCTCCCTCCAAAAGAAACACAACTTTTGTCTCCCATTAAT TTTGATAGATCGTTGCTGCCCGGTCCGGTATCTAGATCGTAGCTAAGGAC GTTGAGATGCGGTGAAATTAAGCCGCTCAGAGGACCATCCACGTCTATGT TTCGTTCTCGTGACCGAGAGGGCTGATCGCCAAGCGGATTCATGTGGATG CGTCCGTCTTTAGTCTGGGTACGCTATTTGTACATTGTTCAGAACAAACA CAAGGTTAGTTTGCCGGTACGATCATAATAATGTATAGGCTCCTCAGTAC AGTTTTGGGCCGGAACTTTAGGCTCAGTTTTGGGTCGGAAGTTTTCCTGT ATGAACGGCCTTCATTCCCGCCATGTTTTTGTGCAAAAATTTTTTTAAAT AATTATTACACTACtgTAGATAGATAAATAGTTGTTGTTTCTCAAATCGA GCGTGTTGGTTGCCAACCGGGAAAAGATTTCAAAAGGTCTTTTAATAGAT GCATTCAGATTTTTCTTTAAAGACTACTTTACACGGTGACCAATCCCGCT CGTGGTCTGCTGAGCAGGGAAAATATCATAAAATAAAACGCCTGTGCAGC GCACCCCCTGAGTGTGGAGATGAGGAGCAGGCTGACGAGGGATAGGACGG CCGAACCCGTCTCGCGAGACCAAATCTCaggAGGCGCGAACGGGGATAGG GAAATATTCGTTTTCCCCGTTCAGCTGACCGCGAGCAGGGTTGGCAACCT TACCCGGTTGATCCATAATACTTTGCTATATGTGATGAACATACATTCTC TATGGTACTTGTACGTACCTTTGACTTTAACTGCTGCCTCCCGATGGAAA ACGCTTTCGACTTGATCCACGTGACTGTAGTCGACGAAAATAAAAATACA CACAAGCCATCGCAGGGAGTGCTGCTCCTGTTCATGATGTATTGGAACTT CGTTCGGCTACTCTGAAGTAATTGTTGGCCATGCGCCCGACCACTGCAGG TGGTGGTCGTGTCAGAGAAGTTCGAGGGAAAATCTCTTGTGGCCCGGCAC CGCATGGTCAATGAGCTGTTCGCCGCGGAGATGAAGAGCAGCGCCATGCA CGGTGAGGAAGTACATGCGCGCTCTCTACAGCATAGCATTGTATCTGGTA GTTTTTCTACGGACGATAGGCAGGGGATGAGAGTTCATTCCCCCAAAAAT AGGTAAGAGCTGTAAACATGTCGATGGCGACGAACTCCGTAATTTGATGT CTCACTTCAAACCCGTAGTTTTTTCCAAAAACATGATGTACTCGTAAGTG ACGCCCCCTGTGCTATTTTAAAGCTTTCGTTGTTTGGGATCGAACGCGCG TTGGGATCTCTGTGACTCATGATATCGACCGCTTCACAATCACCGCCGAC TGCTTTTGCGCACGTCGATTTCGCCAACCCAGCTCTTTCGATCCAGGGGA AAACTCCGTCGCAGTGGGACGAAGAAGGGCACAAAGTGGCGGCTTCCCCG CCTTGCATGGGAGGTTCAAAGTGAGGTTTAGGTTACCCTCAAGGAATCGT GTTTAGAGCCAACTACCTGCGGTTCGAACCCACGCTGGGACTGGTGGTTG GAATCTTTCGCTTCTCCCGGCGCACCTTGACCCTCCGGCTGCGACTAGTT AGGGTGACTTCAAAGGGTGGACTAGTGAGGGGCGAGGGTTTTGATTTGTC CCGTCTGGGAGCATCTTGCTTTCTATGTGCTGCGTCCCCCGCGACTTTTT CGTTGCTGTACTCCTTTCCGGAAGGGCTAGGGATTGCGATTGCACATTGC GTAGCCTTAAAAACGACATGATGTCGTTTGCCGTATCCTTCACTAGAGTA AAGTCGCCATGCGGACGTTTCTATGAAGGGAAATGCCCCTTCGGACACAA TGATGGCCCAGCGCAGATGAGACTCGTCGGGTCGGTCACAATAAGGCGCA CGATTTCCGCCTTTGGAACAGGACGAGCTTTCAGTGCAGATCGCTGGAAA CCCTTTCGCCTTTAGCGCCGCTGTAGGTCACGGACACCCCTCGAAAATGT TCTTTGTATCTCTTTTTCTAACCGAAGCCTTTTCCTGGAGGAGATGGGAT CACGGACCAGATTATTTGAACCTGACAAGCCTTGTAGAAATACAATTTCT GGAATCGACATTAGGATGAAGTGTATCGAAAAAAGCACATCGTAGAACGT CGGGAAAAGTCTTCACATATTTTTTCTCTGCGTGGATTGTGAGCTTCTAA TGCCGAGTCCAAATTGAGAGCCCTGGGACCAAGAAGTGTCCCCCAGCTTC CGGCAAACTTGCCGTTACCCCGCCCCTTGCCTTTCGGTGACGCCGATGCC ATTCAGGCGTACAACCCCATCCGGGTTGGGAGTAGCGCGACCAATGTTAC ACTCTTGGCGACACTCTACGCTGATGTCGTCGTGCCGGTCAGCGGTCGGC CTCAGGCATTCAGCGATCGCGGCGGGATGGCTGATGTGCGTGGTGCTTTG TGCGTTCTCTTCCGGGACCGCGGCTGCAGCGGCGACAACTGGTGGTCGGA TGGCACGGTCAGAGGGACTCGCCGGCTCGAACGCAAATGCAGTCGACAAG GCCTTCTATAGCTTCGTGAAAACCCTGGGCAACGTGCTAAGCGATATTGA GAGCACCTCGTCTGCTTTCAAGGAATTCCTCGTGATGTTCAACACCGCTT GGGTGACCACGAGCACGGCGCCGATCGCGGCGGCGGGTTTGCTCGGTCAA CCTCTGGGGCGAGCCATGGTCGCAACTGCCTCGTCTCACGCGATCTTCGC CCTATCCAAGTTTACCCTGGCTTATGGGGCAATGAACGTGGGCAGCGACG CCGCACGGGGACCCGCGTATCCCTCCTCTCGACGACCGAAGTCGACAGCA CCTCCTCCGAGGCCGTCGGTCGGCCGGCCTCGAACGCTGCTCCCTCTCAG CCGCACACGAGCTCCCGTGCCCAGGCTTCCGCCCATGGGGACGGCGACCG GCGCGGACACTACCAACAGCATAACGCTACAGGTTCGCCGGTCTGCGAAG AGCGTCCCGCGCGTATGGCTAATGGTGGTCACGGCCCTGGGAGGGCCGGG AGTCGGAACAGTGGCATCTCTTGCGACGCACCGTCTCGGCCTGATTTCTA TTCCGGCGGTGTGGTCGTCGGTGTCGAGGGGCTCTGCTCTAGGAACGCTG ATTTCGGCCTCGCTTTGCCACGGAGGTGCGGGGACGCGATGGGCGGCACG ATGGGCCGTTTTTCAAGGCATCTTTGGGGTTTTCCTTTCATTTATACTTA GCCTCGAAGTGCTCCTAGCCGTCAGTGTTATCAATACCGTGACGGGAGCT CGTCGCCGCAGTTTGGGAAACGATGCAGGAAAAGAGCGAGAGGACAACAG TAACAAGAAACGATAGCATGAAATCGGCTACGCCCATCTCGTGTCGCTAA TATAACAACCGCCGAATCACTTTCATAGATAAGGTACGGATCGTGAAATT ATCTACCCTTCGCCACTGGCTACCTATTTTGATCACCTGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig826:155553..164042+

>mRNA_F-serratus_M_contig826.19662.1 ID=mRNA_F-serratus_M_contig826.19662.1|Name=mRNA_F-serratus_M_contig826.19662.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig826:155553..164042+ (Fucus serratus male)
ATGAGTTCCCCTGCGCGGCGACTGCTGCTTGGTGTGTGCCTTGTCGCCCA
ACGTTCTGTTTCGTACCACATACCGCGCGCGGTTCCTGCTTCTCCATTTT
CGTACGCTCGCGCAACGTCCCGTTCGATGGGCATCTTCACGCAATCTCGG
CGGCACGGCCTTCACTCTAGCAGAGTTGTGATGCAAGCGGTAACAATGCA
AGAAACAATTGAGAGTAGACTGGTGGAGGCGCTATCGCCGGTGCACCTGG
AGGTGATAAACGAGAGCCACATGCATTCTGGGCCCGCGACGGAGAGTCAC
TTCAAGATGAGTTCCCCTGCGCGGCGACTGCTGCTTGGTGTGTGCCTTGT
CGCCCAACGTTCTGTTTCGTACCACATACCGCGCGCGGTTCCTGCTTCTC
CATTTTCGTACGCTCGCGCAACGTCCCGTTCGATGGGCATCTTCACGCAA
TCTCGGCGGCACGGCCTTCACTCTAGCAGAGTTGTGATGCAAGCGGTAAC
AATGCAAGAAACAATTGAGAGTAGACTGGTGGAGGCGCTATCGCCGGTGC
ACCTGGAGGTGATAAACGAGAGCCACATGCATTCTGGGCCCGCGACGGAG
AGTCACTTCAAGGTGGTGGTCGTGTCAGAGAAGTTCGAGGGAAAATCTCT
TGTGGCCCGGCACCGCATGGTCAATGAGCTGTTCGCCGCGGAGATGAAGA
GCAGCGCCATGCACGGTGGTGGTCGTGTCAGAGAAGTTCGAGGGAAAATC
TCTTGTGGCCCGGCACCGCATGGTCAATGAGCTGTTCGCCGCGGAGATGA
AGAGCAGCGCCATGCACGCTCTTTCGATCCAGGGGAAAACTCCGTCGCAG
TGGGACGAAGAAGGGCACAAAGTGGCGGCTTCCCCGCCTTGCATGGGAGG
TTCAAAGTGACTCTTTCGATCCAGGGGAAAACTCCGTCGCAGTGGGACGA
AGAAGGGCACAAAGTGGCGGCTTCCCCGCCTTGCATGGGAGGTTCAAAGT
GA
back to top