mRNA_F-serratus_M_contig818.19587.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19587.1
Unique NamemRNA_F-serratus_M_contig818.19587.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A6H5L399_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L399_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 5.400e-38
Identity = 74/91 (81.32%), Postives = 82/91 (90.11%), Query Frame = 3
Query:  318 ASALENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTALRKEGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVSR 590
            A+ +EN VIGA+AGG GSLVTNPMDMI KTRMMTSPE YAGP+DAAW AL KEGPQAF KGATP+LLHKIPANA FFVAYEFFR++LGV+R
Sbjct:  399 ANPIENMVIGAIAGGMGSLVTNPMDMI-KTRMMTSPELYAGPMDAAWKALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSILGVTR 488          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A836CPL2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.570e-27
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  291 AARRRTSGGASA----LENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTALRKEGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVSR 590
            AARRR +   +A    LE  +IGA+AGG G+L TNPMD++ KTRMMT+P  YA   DAA   LR +G +AF +GATP+LLHK+PAN LFF AYE FRTLLGV R
Sbjct:  180 AARRRAAARGAAKPSHLETMLIGAIAGGVGTLATNPMDVV-KTRMMTAPHLYASAWDAAVVTLRADGARAFARGATPRLLHKVPANGLFFAAYELFRTLLGVRR 282          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S1BCN2_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCN2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.700e-21
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  312 GGASALENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYA-GPIDAAWTALRKEGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLLG 581
            G +SA  N V GA AGG GS +TNPMD++ KTR+ TSPE Y  G +  A T L++EGP AF KG  P+L+HKIPANA+FF+ YEFFR +L 
Sbjct:  283 GASSAWRNMVTGATAGGIGSFLTNPMDVV-KTRLQTSPEIYGRGVLQCAMTTLQEEGPAAFLKGMRPRLMHKIPANAVFFLWYEFFRRVLN 372          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: W7TPC5_9STRA (Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.230e-21
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 3
Query:  315 GASALENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTALRK----EGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVS 587
            G++ALE+ V+GA+AGG GSLV+NPMD++ KTR+MT P  Y       W+A+ K    EGP AFFKG  P+LLHK+PANA+FF  YE FR LL V 
Sbjct:  335 GSTALEDSVMGALAGGVGSLVSNPMDVV-KTRVMTQPGLYP----TVWSAVSKVWVEEGPSAFFKGTVPRLLHKVPANAIFFATYEIFRGLLRVQ 424          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S1Y570_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y570_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.430e-16
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  321 SALENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTALRKEG-PQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVS 587
            ++L +   GAVAGG GS VTNPMD+I KTR+ T  + Y G I   +     EG P AF +G+ P+LLHK+PAN +FF+ YE FRTLL V 
Sbjct:  170 TSLVDAFTGAVAGGVGSYVTNPMDVI-KTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRVE 258          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S3V944_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V944_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.190e-16
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 3
Query:  330 ENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPI-DAAWTALRKEGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVS 587
            ++ + G VAGG GS +TNPMD+I KTR+  + E Y+G +   A   L + GP AF +G+ P+L+HK+PANA FFV YEFFR +LG  
Sbjct:  293 KDMIAGGVAGGMGSFMTNPMDVI-KTRLQVNSELYSGNVWVCASRTLEEGGPSAFLRGSVPRLIHKVPANACFFVFYEFFRRVLGAE 378          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S1UWT0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.110e-15
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  321 SALENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTALRKEG-PQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVS 587
            ++L +   GAVAGG GS VTNPMD+I KTR+ T  + Y G I   +     EG P AF +G+ P+LLHK+PAN +FF+ YE FRTLL V 
Sbjct:  336 TSLVDAFTGAVAGGVGSYVTNPMDVI-KTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRVE 424          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S2V6F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6F4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.720e-15
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  342 IGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTA---LRKEGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLLGVSR 590
            IG +AGG G+ +TNPMD++ KTR+MT+     GP     TA   L +EG   F++GA P+LLH+IPANA+FF  YE FR LLG+ R
Sbjct:  252 IGGIAGGVGTWMTNPMDVV-KTRIMTAAVGPQGPPLVTTTANKILAEEGLLGFYRGAVPRLLHRIPANAVFFPFYECFRDLLGIKR 336          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S0AXI6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AXI6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.580e-14
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  345 GAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDA-AWTALRKEGPQAFFKGATPKLLHKIPANALFFVAYEFFRTLL 578
            GA+AGG GS +TNPMD++ KTR+ T PE Y G + A A     + GP AF +G  P+LLHK+PAN+LFF  YE F+ ++
Sbjct:  169 GAIAGGVGSYLTNPMDVV-KTRLQTQPELYGGSMLACARDTFIEGGPAAFLRGCVPRLLHKVPANSLFFCFYEAFKRMM 246          
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Match: A0A7S2R0R3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0R3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.910e-14
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  330 ENRVIGAVAGGTGSLVTNPMDMILKTRMMTSPESYAGPIDAAWTALRKEG-PQAFFKGATPKLLHKIPANALFFVAYEFFRTLL 578
            ++ V GA++GG G  +TNPMD++ KTR+   PE Y G + A   A   EG  +AF +G+ P+LLHKIPAN  FFV YE FR LL
Sbjct:  124 KDMVAGAISGGLGGYLTNPMDVV-KTRLQIHPELYNGHVWACACATFDEGGARAFLRGSVPRLLHKIPANGCFFVFYELFRRLL 206          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L399_9PHAE5.400e-3881.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPL2_9STRA2.570e-2760.58Mitochondrial carrier domain-containing protein n=... [more]
A0A7S1BCN2_9STRA2.700e-2158.24Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
W7TPC5_9STRA7.230e-2156.84Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S1Y570_9STRA2.430e-1652.22Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3V944_9STRA4.190e-1650.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1UWT0_9STRA1.110e-1552.22Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2V6F4_9STRA8.720e-1552.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0AXI6_9STRA2.580e-1451.90Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2R0R3_9STRA6.910e-1451.19Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:69721..71142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D7FJT3
KEGG koko:K15111
KEGG TC2.A.29.18
Hectar predicted targeting categoryother localisation
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons3
Model size864
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19587.1prot_F-serratus_M_contig818.19587.1Fucus serratus malepolypeptideF-serratus_M_contig818 70272..70871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.8049397-UTR-F-serratus_M_contig818:69720..698991622932435.8049397-UTR-F-serratus_M_contig818:69720..69899Fucus serratus maleUTRF-serratus_M_contig818 69721..69899 +
1690964307.8628054-UTR-F-serratus_M_contig818:69720..698991690964307.8628054-UTR-F-serratus_M_contig818:69720..69899Fucus serratus maleUTRF-serratus_M_contig818 69721..69899 +
1622932435.825504-UTR-F-serratus_M_contig818:70064..702711622932435.825504-UTR-F-serratus_M_contig818:70064..70271Fucus serratus maleUTRF-serratus_M_contig818 70065..70271 +
1690964307.873981-UTR-F-serratus_M_contig818:70064..702711690964307.873981-UTR-F-serratus_M_contig818:70064..70271Fucus serratus maleUTRF-serratus_M_contig818 70065..70271 +
1622932435.8939924-UTR-F-serratus_M_contig818:70871..711421622932435.8939924-UTR-F-serratus_M_contig818:70871..71142Fucus serratus maleUTRF-serratus_M_contig818 70872..71142 +
1690964307.8997781-UTR-F-serratus_M_contig818:70871..711421690964307.8997781-UTR-F-serratus_M_contig818:70871..71142Fucus serratus maleUTRF-serratus_M_contig818 70872..71142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.8512716-CDS-F-serratus_M_contig818:70271..703701622932435.8512716-CDS-F-serratus_M_contig818:70271..70370Fucus serratus maleCDSF-serratus_M_contig818 70272..70370 +
1690964307.882776-CDS-F-serratus_M_contig818:70271..703701690964307.882776-CDS-F-serratus_M_contig818:70271..70370Fucus serratus maleCDSF-serratus_M_contig818 70272..70370 +
1622932435.8724866-CDS-F-serratus_M_contig818:70763..708711622932435.8724866-CDS-F-serratus_M_contig818:70763..70871Fucus serratus maleCDSF-serratus_M_contig818 70764..70871 +
1690964307.891459-CDS-F-serratus_M_contig818:70763..708711690964307.891459-CDS-F-serratus_M_contig818:70763..70871Fucus serratus maleCDSF-serratus_M_contig818 70764..70871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19587.1

>prot_F-serratus_M_contig818.19587.1 ID=prot_F-serratus_M_contig818.19587.1|Name=mRNA_F-serratus_M_contig818.19587.1|organism=Fucus serratus male|type=polypeptide|length=69bp
MDMILKTRMMTSPESYAGPIDAAWTALRKEGPQAFFKGATPKLLHKIPAN
ALFFVAYEFFRTLLGVSR*
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mRNA from alignment at F-serratus_M_contig818:69721..71142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19587.1 ID=mRNA_F-serratus_M_contig818.19587.1|Name=mRNA_F-serratus_M_contig818.19587.1|organism=Fucus serratus male|type=mRNA|length=1422bp|location=Sequence derived from alignment at F-serratus_M_contig818:69721..71142+ (Fucus serratus male)
GAAGCAGCGGCTACAGGTTGGCGCGTACCTCAGCACTGCGTGCGCATTGC GATCTATGTATAGCCAAGTGAAGTGAATCAGTCCTTCACGTATCTCAGAG TAGTTGGCAAAGCGGGAACTTCGCGACGGTCGCCCGTGCTTCCTCTGAAT AAACCACGAGCCAACCCGCGGTTGACAAGGTACGCGATGTACTGAAAATT TGTATTTTTTTTAGCTGAAACCTGTGAGAAATAGGTAGATGTAAAAGTTC CCTGGATGCCCACTTTGTTTCAAAAATATTTTGTTATAAGTTGTTATTTG GCCTGTCGGTTCTCCCCCTCATGGCCTGTATTTCGCTTCGAAAGAGGAAG GCTTGTGGGGATTCTTCGGGAAAGGTGGCATCACGACACAGTGGGCGCGA GACATCCCCTACACGATGGTAACGCTCTTGGTCTACGAAACCCTGCAGAA GGTGGGCGGCGCGCCGCAGGACATCCGGTGGGGCAAGCGCGTTGGAAAAT AGGGTGATAGGCGCGGTCGCGGGGGGCACGGGTTCCTTGGTGACGAACCC CATGGACATGATACTAAAGACAAGAATGATGACGTCACCTGAGAGTTACG CCGGACCTATCGACGCAGCCTGGACGGCGTTACGAAAGGAGGGTCCCCAG GTCAGAACCTGAGCCCTCATAAAATTCTCGGAGCATGATATGTTGGGCAT TTGTTTGCTTCGTTGCCGAGCTTTGATAGGACGTTGATGTTTACCCATAG CGTCCCTTCGAATCGATGCAACGCGCATGCATACATGTTAAGAACGGGTC ATACAACGTACTGTAAAGCTGATGATGTCCATGAAGGGCCTACTGTATAG AGCGATTGGGTTTGACCTTGAACGAGCGTTTATAGTTTAATAGTGTAACG ACCTGGAGTGCTCGAACTTTGAGTACTTGTTCCCCTTCACCCGGCCCTAT CATAAACTCACCCATTTCATACACTATTTCTCTAGTCAAGTGCACACGTG TCTTTACGTGAGAAAAGACACCCACTCTTGTCATGTTTTGCAGGCATTCT TCAAAGGAGCCACGCCGAAGCTTCTACATAAGATTCCGGCCAACGCTCTG TTTTTCGTTGCGTACGAGTTCTTCAGAACTCTTCTGGGCGTGTCGCGATG ACATCGGCGGTGGACGCGCATTTGACGCACCTTGTACTACGCTCACGTTC CCTTAAGAAGGACCGGGAAAAGGATCGGACTTCGCACagttAGTGCGGAT TTGGCCGCCTGGGTGTATGCAGAGAGGTATTTAATGAGGGAGTCTTAGGC CGTAGGTTCCAAGCCACATCGCGCCGAGAAGCAGAATGTTGTGTAGATGT TGTGCATATTTTTGTTCTGGTAGGTGCTTGTGAAGCTATGCGGCAGCACC TTGAATTGGTTTTGTTAAGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:69721..71142+

>mRNA_F-serratus_M_contig818.19587.1 ID=mRNA_F-serratus_M_contig818.19587.1|Name=mRNA_F-serratus_M_contig818.19587.1|organism=Fucus serratus male|type=CDS|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig818:69721..71142+ (Fucus serratus male)
ATGGACATGATACTAAAGACAAGAATGATGACGTCACCTGAGAGTTACGC
CGGACCTATCGACGCAGCCTGGACGGCGTTACGAAAGGAGGGTCCCCAGA
TGGACATGATACTAAAGACAAGAATGATGACGTCACCTGAGAGTTACGCC
GGACCTATCGACGCAGCCTGGACGGCGTTACGAAAGGAGGGTCCCCAGGC
ATTCTTCAAAGGAGCCACGCCGAAGCTTCTACATAAGATTCCGGCCAACG
CTCTGTTTTTCGTTGCGTACGAGTTCTTCAGAACTCTTCTGGGCGTGTCG
CGATGAGCATTCTTCAAAGGAGCCACGCCGAAGCTTCTACATAAGATTCC
GGCCAACGCTCTGTTTTTCGTTGCGTACGAGTTCTTCAGAACTCTTCTGG
GCGTGTCGCGATGA
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