mRNA_F-serratus_M_contig804.19441.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig804.19441.1
Unique NamemRNA_F-serratus_M_contig804.19441.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.240e-66
Identity = 130/328 (39.63%), Postives = 189/328 (57.62%), Query Frame = 1
Query:    7 MVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKIPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPLDVQKFCKHAKFILNV 987
            +++VVHVDDI A   ++   D+F A+L +   +K++G+  +  GC   RN++   L   Q  + + +   + V     +P +SGV  LS  D        E    FP+RE VG LM  AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  + I++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW SR Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHID + H +R+  + + + V +V S  Q+AD LTK L    F  H  F++N+
Sbjct:  142 LILVVHVDDIFAVG-ERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD------ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A182H216_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H216_AEDAL)

HSP 1 Score: 216 bits (551), Expect = 8.470e-65
Identity = 131/329 (39.82%), Postives = 192/329 (58.36%), Query Frame = 1
Query:   13 VVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKN--KAKIPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQV--QEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPLDVQKFCKHAKFILNV 987
            + ++VDD L +  D  M  R    L  +FR+KD+G A+YC+G  I+RN++  EL  DQ  Y+E ++ RF++ +      P  S    L K+  P++  E EEMK  PY+EAVG L   A  TRPDI+ AV AV++F  NPG  H EAV +I +YL  T   R+ +  +G G  +  YTD+D+G  +D+RRS +G V     GAISW+ + Q   A  + EAEY+ALS  +++ L+ R +  Q F E  +++     F DN+ AI +A N   + RTKH+D + H + DA D+  V + YV ++DQ AD  TKPL VQ    + K I+ +
Sbjct:    4 ITIYVDDFLIFTNDAKMRKRLKTFLCNRFRMKDLGQAKYCLGLQISRNKERGELSIDQRKYIEDVLDRFNLTDCHPVSTPFESSE-RLDKSMTPKSQDEIEEMKKVPYKEAVGCLQYIAQATRPDISFAVNAVSQFSSNPGRKHWEAVKRILRYLKGTINNRLLFNKRGNGEII-GYTDADWGGDVDSRRSTTGYVFMFQGGAISWNVKRQPTVALSSCEAEYMALSRTIQEALWWRNMLKQIFGETQIKI-----FCDNQSAISIAKNGSYNPRTKHVDIRYHFVHDAIDSGSVAINYVNTKDQAADGFTKPL-VQSGVTNMKRIIGI 324          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.770e-63
Identity = 129/325 (39.69%), Postives = 188/325 (57.85%), Query Frame = 1
Query:   16 VVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKIPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPLDVQKFCKHAKFILNV 987
            VVHVDDI +  +++   D+F  +L     +K++GD  +  GC   R+  A  LK  Q  Y E +   F V+   +IP   G+  LS+ D      + EE+  +P+RE +G LM  AT TRPDIA AVRAVAR+C +P   H  A + I  Y++ T +  I +  G   GL ME + D+D+ +    RRSVSG ++    G ISW SR Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHID + H IR+    + + + +V S  Q AD LTK L    F  H  +++++
Sbjct:  121 VVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.330e-62
Identity = 130/328 (39.63%), Postives = 189/328 (57.62%), Query Frame = 1
Query:    7 MVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKIPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPLDVQKFCKHAKFILNV 987
            +++VVHVDDI A   ++   D+F A+L +   +K++G+  +  GC   RN++   L   Q  + + +   + V     +P +SGV  LS  D        E    FP+RE VG LM  AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  + I++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW SR Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + VFEDN+GAI+LA N  ++  +KHID + H +R+  + + + V +V S  Q+AD LTK L    F  H  F++N+
Sbjct: 1478 LILVVHVDDIFAVG-ERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD------ADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 1797          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.610e-62
Identity = 129/328 (39.33%), Postives = 189/328 (57.62%), Query Frame = 1
Query:    7 MVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKIPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPLDVQKFCKHAKFILNV 987
            +++VVHVDDI A   ++   D+F A+L +   +K++G+  +  GC   RN++   L   Q  + + +   + V     +P +SGV  LS  D        E    FP+RE VG LM  AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  + I++  G   G  ++ Y D+DF +    RRSVSG ++    GA+SW SR Q+     T+EAEYVAL +VVK++LFLRQ+  FM P + +  + +FEDN+GAI+LA N  ++  +KHID + H +R+  + + + V +V S  Q+AD LTK L    F  H  F++N+
Sbjct:  972 LILVVHVDDIFAVG-ERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFD------ADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 1291          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.530e-62
Identity = 126/315 (40.00%), Postives = 195/315 (61.90%), Query Frame = 1
Query:    4 EMVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAK--IPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPL 942
            E +V ++VDD+L  ++ +A++    A + +KFR+KD+G A + +G  I  + + R L   Q  Y ES++K+F  +N      P   GV  L+KAD+P+  ++K +MK  PYR  VG LM  A  TRPDI+ AV  ++RF ENPG  H +A +K+ +YLL TK+  I Y G   G  +EAY+D+++    D RRSVSG +L L    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    +VGA+ ++EDN+GA+ LA N     RTKHID + H IR+   +  V + YV +++Q AD +TK L
Sbjct:  102 ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGL 413          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 7.940e-62
Identity = 129/325 (39.69%), Postives = 188/325 (57.85%), Query Frame = 1
Query:   16 VVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKIPAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPLDVQKFCKHAKFILNV 987
            VVHVDDI +  +++   D+F  +L     +K++GD  +  GC   R+  A  LK  Q  Y E +   F V+   +IP   G+  LS+ D      + EE+  +P+RE +G LM  AT TRPDIA AVRAVAR+C +P   H  A + I  Y++ T +  I +  G   GL ME + D+D+ +    RRSVSG ++    G ISW SR Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHID + H IR+    + + + +V S  Q AD LTK L    F  H  +++++
Sbjct:  295 VVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 611          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 215 bits (547), Expect = 4.130e-61
Identity = 126/315 (40.00%), Postives = 192/315 (60.95%), Query Frame = 1
Query:    4 EMVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKI--PAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPL 942
            E +V ++VD++L  ++ +A++    A + +KFR+KD+G A + +G  I  N + R L   Q  Y ES++K F  +N      P   GV  L+KAD+P+  ++K +MK  PYR  VG LM  A  TRPD++ AV  ++RF ENPG  H ++ +K  +YLL TK+  I Y GQ  G  +EAY+D+D+    D RRSVSG +L L    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID + H IR+      V + YV +++Q AD +TK L
Sbjct:  296 ECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGL 607          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.770e-61
Identity = 127/315 (40.32%), Postives = 197/315 (62.54%), Query Frame = 1
Query:    4 EMVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKI--PAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPL 942
            E +V ++VDD+L  ++  A++    A + +KFR+KDMG A + +G  I  + + R L   Q  Y ES++K+F  +N      P   GV  L+KAD+P+  ++K +MK+ PYR  VG LM  A  TRPDI+ AV  ++RF ENPG  H +A +K+ +YLL TK+  I Y G   G  +EAY+D+D+    D RRSVSG +L L +  + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID + H +R+ + +  V++ YV +++Q AD +TK L
Sbjct:  594 ECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGL 905          
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 215 bits (548), Expect = 5.130e-61
Identity = 127/315 (40.32%), Postives = 195/315 (61.90%), Query Frame = 1
Query:    4 EMVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRNRKARELKFDQHLYVESMVKRFDVKNKAKI--PAASGVPMLSKADKPRNPKEKEEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMKIFQYLLHTKEWRIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALTKGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRSEDQQADLLTKPL 942
            E +V ++VDD+L  ++ +A++    A + +KFR+KDMG A + +G  I  + + R L   Q  Y ES++K+F  +N      P   GV  L+KAD+P+  ++K +MK  PYR  VG LM  +  TRPDI+ AV  ++RF ENPG  H +A +K+ +YLL TK+  I Y G   G  +EAY+D+D+    D RRSVSG +L L    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N      TKHID + H IRD + +  V++ YV +++Q AD +TK L
Sbjct:  328 ECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGL 639          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig804.19441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE1.240e-6639.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182H216_AEDAL8.470e-6539.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.770e-6339.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE1.330e-6239.63Integrase catalytic domain-containing protein n=18... [more]
A0A6H5JG40_9PHAE1.610e-6239.33Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0MK94_9STRA2.530e-6240.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE7.940e-6239.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q8N8_9STRA4.130e-6140.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3YGI7_9STRA4.770e-6140.32Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA5.130e-6140.32Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig804contigF-serratus_M_contig804:260195..261187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue5.5e-53
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size993
Cds size987
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.0428405-UTR-F-serratus_M_contig804:260194..2602001622932402.0428405-UTR-F-serratus_M_contig804:260194..260200Fucus serratus maleUTRF-serratus_M_contig804 260195..260200 +
1690964291.122022-UTR-F-serratus_M_contig804:260194..2602001690964291.122022-UTR-F-serratus_M_contig804:260194..260200Fucus serratus maleUTRF-serratus_M_contig804 260195..260200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.0574293-CDS-F-serratus_M_contig804:260200..2611871622932402.0574293-CDS-F-serratus_M_contig804:260200..261187Fucus serratus maleCDSF-serratus_M_contig804 260201..261187 +
1690964291.136878-CDS-F-serratus_M_contig804:260200..2611871690964291.136878-CDS-F-serratus_M_contig804:260200..261187Fucus serratus maleCDSF-serratus_M_contig804 260201..261187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig804.19441.1prot_F-serratus_M_contig804.19441.1Fucus serratus malepolypeptideF-serratus_M_contig804 260201..261187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig804.19441.1

>prot_F-serratus_M_contig804.19441.1 ID=prot_F-serratus_M_contig804.19441.1|Name=mRNA_F-serratus_M_contig804.19441.1|organism=Fucus serratus male|type=polypeptide|length=329bp
MVVVVHVDDILAYAKDQAMMDRFAAELGQKFRLKDMGDAEYCMGCHITRN
RKARELKFDQHLYVESMVKRFDVKNKAKIPAASGVPMLSKADKPRNPKEK
EEMKMFPYREAVGVLMRTATMTRPDIACAVRAVARFCENPGPAHKEAVMK
IFQYLLHTKEWRIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLALT
KGAISWHSRMQEVTASGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVG
AVNVFEDNEGAIKLATNKHASRRTKHIDAKPHLIRDASDAQRVRVAYVRS
EDQQADLLTKPLDVQKFCKHAKFILNVV*
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mRNA from alignment at F-serratus_M_contig804:260195..261187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig804.19441.1 ID=mRNA_F-serratus_M_contig804.19441.1|Name=mRNA_F-serratus_M_contig804.19441.1|organism=Fucus serratus male|type=mRNA|length=993bp|location=Sequence derived from alignment at F-serratus_M_contig804:260195..261187+ (Fucus serratus male)
ACGGAGATGGTGGTGGTCGTACACGTAGACGACATCCTTGCCTACGCCAA AGACCAAGCGATGATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTA GATTGAAGGACATGGGGGACGCTGAGTACTGCATGGGTTGTCACATCACC AGGAACCGCAAGGCGCGCGAGTTGAAGTTCGACCAACACCTGTACGTGGA GTCAATGGTAAAAAGATTTGATGTCAAGAATAAAGCTAAGATACCGGCTG CGTCGGGGGTGCCGATGCTCTCAAAGGCGGATAAACCGCGAAACCCAAAG GAGAAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTTGGGGTGCT CATGAGGACGGCGACGATGACACGGCCGGATATTGCGTGCGCCGTACGCG CTGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGGAAGCAGTG ATGAAGATCTTCCAGTATCTCCTTCACACGAAAGAATGGAGGATTGCGTA CGGTGGACAGGGCTGCGGACTCTGCATGGAAGCATATACGGATTCGGATT TTGGAGCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTTGGCG TTGACCAAGGGAGCGATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGC ATCAGGTACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTCAAGG ATGTACTATTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCGATGAGG GTCGGTGCGGTAAATGTGTTTGAAGATAATGAGGGGGCCATCAAGCTGGC CACAAACAAGCATGCTAGCCGTAGGACTAAGCACATTGATGCGAAGCCTC ATCTAATAAGGGACGCGTCTGACGCGCAAAGGGTAAGAGTAGCGTACGTA AGGTCGGAAGATCAGCAAGCGGATTTGCTCACAAAACCGCTAGACGTTCA AAAGTTTTGTAAGCACGCGAAGTTCATCCTAAATGTAGTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig804:260195..261187+

>mRNA_F-serratus_M_contig804.19441.1 ID=mRNA_F-serratus_M_contig804.19441.1|Name=mRNA_F-serratus_M_contig804.19441.1|organism=Fucus serratus male|type=CDS|length=1974bp|location=Sequence derived from alignment at F-serratus_M_contig804:260195..261187+ (Fucus serratus male)
ATGGTGGTGGTCGTACACGTAGACGACATCCTTGCCTACGCCAAAGACCA
AGCGATGATGGATAGATTCGCGGCCGAGCTTGGGCAGAAGTTTAGATTGA
AGGACATGGGGGACGCTGAGTACTGCATGGGTTGTCACATCACCAGGAAC
CGCAAGGCGCGCGAGTTGAAGTTCGACCAACACCTGTACGTGGAGTCAAT
GGTAAAAAGATTTGATGTCAAGAATAAAGCTAAGATACCGGCTGCGTCGG
GGGTGCCGATGCTCTCAAAGGCGGATAAACCGCGAAACCCAAAGGAGAAG
GAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTTGGGGTGCTCATGAG
GACGGCGACGATGACACGGCCGGATATTGCGTGCGCCGTACGCGCTGTGG
CCAGGTTCTGCGAAAACCCTGGGCCGGCACACAAGGAAGCAGTGATGAAG
ATCTTCCAGTATCTCCTTCACACGAAAGAATGGAGGATTGCGTACGGTGG
ACAGGGCTGCGGACTCTGCATGGAAGCATATACGGATTCGGATTTTGGAG
CCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTTGGCGTTGACC
AAGGGAGCGATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGCATCAGG
TACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTCAAGGATGTAC
TATTTTTGAGACAGGTGCAGGAGTTCATGGAACCGTCGATGAGGGTCGGT
GCGGTAAATGTGTTTGAAGATAATGAGGGGGCCATCAAGCTGGCCACAAA
CAAGCATGCTAGCCGTAGGACTAAGCACATTGATGCGAAGCCTCATCTAA
TAAGGGACGCGTCTGACGCGCAAAGGGTAAGAGTAGCGTACGTAAGGTCG
GAAGATCAGCAAGCGGATTTGCTCACAAAACCGCTAGACGTTCAAAAGTT
TTGTAAGCACGCGAAGTTCATCCTAAATGTAGTGTGAATGGTGGTGGTCG
TACACGTAGACGACATCCTTGCCTACGCCAAAGACCAAGCGATGATGGAT
AGATTCGCGGCCGAGCTTGGGCAGAAGTTTAGATTGAAGGACATGGGGGA
CGCTGAGTACTGCATGGGTTGTCACATCACCAGGAACCGCAAGGCGCGCG
AGTTGAAGTTCGACCAACACCTGTACGTGGAGTCAATGGTAAAAAGATTT
GATGTCAAGAATAAAGCTAAGATACCGGCTGCGTCGGGGGTGCCGATGCT
CTCAAAGGCGGATAAACCGCGAAACCCAAAGGAGAAGGAAGAGATGAAGA
TGTTCCCGTACCGAGAGGCAGTTGGGGTGCTCATGAGGACGGCGACGATG
ACACGGCCGGATATTGCGTGCGCCGTACGCGCTGTGGCCAGGTTCTGCGA
AAACCCTGGGCCGGCACACAAGGAAGCAGTGATGAAGATCTTCCAGTATC
TCCTTCACACGAAAGAATGGAGGATTGCGTACGGTGGACAGGGCTGCGGA
CTCTGCATGGAAGCATATACGGATTCGGATTTTGGAGCCTGCCTGGACAC
AAGACGGTCGGTTTCAGGTGCGGTGTTGGCGTTGACCAAGGGAGCGATCA
GTTGGCACTCGAGGATGCAAGAAGTAACAGCATCAGGTACCTCGGAGGCA
GAGTACGTTGCCTTATCGGAGGTAGTCAAGGATGTACTATTTTTGAGACA
GGTGCAGGAGTTCATGGAACCGTCGATGAGGGTCGGTGCGGTAAATGTGT
TTGAAGATAATGAGGGGGCCATCAAGCTGGCCACAAACAAGCATGCTAGC
CGTAGGACTAAGCACATTGATGCGAAGCCTCATCTAATAAGGGACGCGTC
TGACGCGCAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAGCAAG
CGGATTTGCTCACAAAACCGCTAGACGTTCAAAAGTTTTGTAAGCACGCG
AAGTTCATCCTAAATGTAGTGTGA
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