mRNA_F-serratus_M_contig80.19404.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 208 bits (530), Expect = 1.140e-67 Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 1
Query: 1 MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVSK 363
M+GKGKGGRGKKS +RS+KAGLQFPVGR+GRFLK GKY+ RVGAG+PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 121
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 208 bits (530), Expect = 6.660e-67 Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 1
Query: 1 MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVSK 363
M+GKGKGGRGKKS +RS+KAGLQFPVGR+GRFLK GKY+ RVGAG+PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.030e-66 Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVS 360
M+GKGKGGRGKKS S+SSKAGLQFPV RIGR+LK GKY+ RVGAG+PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK S
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 120
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.040e-65 Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVS 360
M+GKGKGGRGKKS S+SSKAGLQFPV RIGR+LK GKY+ RVGAG+PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK S
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKSS 171
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 202 bits (515), Expect = 2.000e-65 Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 1
Query: 1 MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 354
M+GKGKGGRGKK SRS+KAGLQFPVGRIGRF+K GKYS RVG G+PVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.860e-63 Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = 1
Query: 1 MTGKGKGGRG---KKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVSKA 366
M GKGKGGRG KKS S+SSKAGLQFPV R+GRFLK G+Y++RVGAG+PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK + A
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTASA 125
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 194 bits (494), Expect = 3.500e-62 Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 1 MTGKGKGGRG-KKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVSK 363
M+GKGKGGRG KKS + S+KAGLQFPVGRIGR+L+ GKY+ R+GAG+PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLGGVTIASGGVLPNIHAVLLPKK +K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: A0A6V1P7M0_HETAK (Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M0_HETAK) HSP 1 Score: 195 bits (496), Expect = 3.780e-62 Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 1
Query: 13 GKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVSKA 366
GK GRGKKS +RSSKAGLQFPVGRIGR+LK G+YS RVGAG+PVYLAAVLEYL AE+LELAGNAARDNKK RIVPRH+QLAVRNDEELNKLLGGVTIA GGVLPNIH VLLPKK A
Sbjct: 29 GKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 146
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA) HSP 1 Score: 194 bits (494), Expect = 5.160e-62 Identity = 99/120 (82.50%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVS 360
M+GKGKGGRGKKS + S+KAGLQFPVGRIGR+LK GK++ R+GAG+PVYLAAVLEYL AE+LELAGNAARDNKK+RI PRHI LAV+NDEELNKLLGGVTIA GGVLPNIH+VLLPKK S
Sbjct: 1 MSGKGKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKKAS 120
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 194 bits (492), Expect = 7.060e-62 Identity = 101/122 (82.79%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MTGKGKGGRG-KKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKVSK 363
M+GKGKGGRG KKS + S+KAGLQFPVGRIGR+L+ GKY+ R+GAG+PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLGGVTIASGGVLPNIHA+LLPKK K
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig80.19404.1 >prot_F-serratus_M_contig80.19404.1 ID=prot_F-serratus_M_contig80.19404.1|Name=mRNA_F-serratus_M_contig80.19404.1|organism=Fucus serratus male|type=polypeptide|length=124bp MTGKGKGGRGKKSASRSSKAGLQFPVGRIGRFLKGGKYSKRVGAGSPVYLback to top mRNA from alignment at F-serratus_M_contig80:876982..877353- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig80.19404.1 ID=mRNA_F-serratus_M_contig80.19404.1|Name=mRNA_F-serratus_M_contig80.19404.1|organism=Fucus serratus male|type=mRNA|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig80:876982..877353- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig80:876982..877353- >mRNA_F-serratus_M_contig80.19404.1 ID=mRNA_F-serratus_M_contig80.19404.1|Name=mRNA_F-serratus_M_contig80.19404.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig80:876982..877353- (Fucus serratus male)back to top |