mRNA_F-serratus_M_contig7888.19142.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7888.19142.1
Unique NamemRNA_F-serratus_M_contig7888.19142.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 520 bits (1338), Expect = 1.050e-172
Identity = 269/455 (59.12%), Postives = 323/455 (70.99%), Query Frame = 1
Query:   88 EDGGCATMTDIYKTRVESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEP-DASADGRPSDNNFYGNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNTFEDADSDLCYKNFES--------STFASTDDTLPSL 1425
            E  GC T+TD+Y  R+ESDG + KGP++ LD + + + +P  ++ KWLL ++LHI  G++FYCRG+SIGGDCDELRIQSTG TDF+EVR HGGS+YFE+T+VTSWDTPNK+P   Y  GRSF+NCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT                                GG  A GIFLHRSSD   V+DN VHDMQDAG+A++ES +ADI++N F++VK+G+R+SLG   N+V++N+F++ S  GLYTYQGSDEP D  +DGRPSDN F  N I N   GVKI E DDT IT N FTGTS  EF DAQNT W  NT       +C KN  S        STF      LP+L
Sbjct:   83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD------------GGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNTLPQG---VCIKNIHSDDGIDIELSTFDRRTAGLPTL 521          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 1.360e-170
Identity = 266/461 (57.70%), Postives = 322/461 (69.85%), Query Frame = 1
Query:   40 SMRYSSGSGLNGRIYLEDGGCATMTDIYKTR-VESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASADGRPSDNNFYGNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNTFEDADSDLCYKNFESSTFASTDDTLP 1419
            S RY++ SG+ GR+Y E  GC TMTD+Y  R  E+DG + KGPVY+LD +   +  P+ +T  WLLA++L+I  G +FYC+GTS GGDC++LRIQSTGS DF+EVRGHGGSLYFE+T+VTSWDTPNK P + YE+GRSF+NCVSE  + + C+G  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                              GGA A GIFLHRSSD   V+DN + +MQDAGIA++ESFDA I+ N     KYG+R+SLG GNN VY N F + S+YGLYTY+GSDEPD S DGRPS N    N + +   GVKI E DD     NTF     FEF ++ NT+WS N   D     C +  +    AS  D++P
Sbjct:  429 SFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGNDIGDG----CIEEDDEFDAASGSDSIP 883          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 494 bits (1271), Expect = 1.600e-163
Identity = 258/457 (56.46%), Postives = 313/457 (68.49%), Query Frame = 1
Query:   88 EDGGCATMTDIYKTR-VESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASADGRPSDNNFYGNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNTFEDADSDLCYKNFES--------STFAST 1404
            E  GC T+TD+Y  R  E+DG + KGP+Y+LDG+   + +PTSVT KWLL ++L++  G+IFYC G+  GGDCDELRIQSTG  D+ EVRGHGGS+YF +T+VTSWDTPNK P + YE GRSF+NCVSE  + ETCDG  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +A                              GG  AVGIFLHRSSD+ EVY N + +M DAGIA++ESF+ADIHDN    V++G+R+SLG G N+VYDN F++CS +GLYTY GSDEPD S +GRP+ N F  N ++N+A GVK   +D+  +T N FTGT   EF DAQ T WS N+     S +C  N  S        STF+S+
Sbjct:   18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVS-NGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGNSLP---SGVCIDNITSDDGNSVPPSTFSSS 457          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 3.690e-153
Identity = 236/448 (52.68%), Postives = 299/448 (66.74%), Query Frame = 1
Query:   88 EDGGCATMTDIYKTRVESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY-ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASADGRPSDNNFYGNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNTFEDADSDLCYKNFESSTFASTDDTLPSLC 1428
            + GGC T++D+Y  +   +    KGPV++LD ND +  + T+ TGKWLL +DL +  G+  YCRG  +GG+C ELRI+ST  +DF E+RGHGG+LYFE+T+VTSWD   + P + Y+DGRSFI CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP+VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                              GGA A GIFLHRS D  EVY N + +M DAGIA++E+   DIHDN     ++G+R+ LG  NN V+DNVF      G++TY GSDEP     GRP DN FY NTI  T TGVKI E+D+ SIT N F+GT+  EF +A + VWS N+     ++ C ++ ++++  +    LP  C
Sbjct:    7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGNSIP---TNTCLEDIDNNSTFTGSSGLPLEC 447          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 2.400e-137
Identity = 209/348 (60.06%), Postives = 250/348 (71.84%), Query Frame = 1
Query:  109 MTDIYKTR-VESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSK 1125
            MTD+Y  R  E DG + KGPVY+LD +   +  P+ +T  WLLA++L+I  G +FYC+GTS GGDC++LRIQSTGS DF+EVRGHGGSLYFE+T+VTSWDTPNK P + YE GRSF+NCVSE  + + C+G  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNPEVFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT                                GGA AVGIFLHRSSD   V+DN + +MQDAGIA++E+FDA I+ N+    KYG+R+SLG GNN VY N F + S+
Sbjct:    1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD------------GGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 9.190e-133
Identity = 230/459 (50.11%), Postives = 294/459 (64.05%), Query Frame = 1
Query:   73 GRIYLEDGGCATMTDIYKTRVESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESD--ETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASAD--GRPSDNNFYGNTISNTATGVKITEADDTSITGNTF---TGTSVFEFKDAQNTVWSSNTFEDADSDLCYKNFESSTFASTDDTLPSLC 1428
            G+ Y+  GGCAT+TDIY  +    G    GP+++LD ND+++    S TG WLL  D+H+  GS+    G   GGD   LRIQSTGS D+ E+RGHGGSL F +T VTSWDT  K    +Y+  RSFI CVSE  +D  +TCDG   N  GECRMDII SEMG +G+  +ESYG++WKVRG+C++  NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                              GG  AVGIFLHRSSD CEV+ N V+DM+DAG+AIMES  A IHDN+FTNVKYG+R+S+G   N V +N F EC +YG+YTYQG+D+P+AS D  G   DN F+ NT+     GVKI +A+    T N F   +    + F+D ++ VW++N   D   D+C K  ++  +  + D+LP LC
Sbjct:  398 GKNYIRGGGCATLTDIYTAQ---GGHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPD---DICLKGDKNIDYMKSYDSLPDLC 845          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 403 bits (1036), Expect = 7.230e-130
Identity = 234/419 (55.85%), Postives = 271/419 (64.68%), Query Frame = 1
Query:  172 ILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASADGRPSDNNFYGNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNTFEDADSDLCYKNFES--------STFAST 1404
            +LD + + + SPTSVT KWLL S+L++  G+IFYC G+  GGDCDELRIQSTG  D+ EVRGHGGS+YF +T+VTSWDTPNK P + YE GRSF+NCVSE  + ETCDG+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX                 GG +AVGIFLHRSSD+ EVY                                                        G       D PD S +GRP+ N F  N I+NTA GVKI  +D+  I+ N FTGT   EF DAQ T WS N+     S +C  N  S        STF+S+
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVS-NGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDNSLP---SGVCIDNVTSDDGNSVPPSTFSSS 360          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 5.680e-128
Identity = 221/431 (51.28%), Postives = 281/431 (65.20%), Query Frame = 1
Query:   82 YLEDGGCATMTDIYKTRVESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDET--CDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKS------NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDA-SADGRPSDNNFYGNTISNTAT--GVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNT 1341
            Y E GGC T+T +Y+ + E DG     P+Y+LD N+D++    + TG WLL  +L ++ GS     GT+  GD D LR+ ST S DF EVRG+GG+L+F++T VTSWDT N    +   DGRSFINCV++++      CDG+   ++GECRMDII S MG +GWFD+ESYGLTWKVRG C          N E+F+  NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+                              GG  AVGIFLHRSSD  EV+DN V++MQDAG+A+MES+DA+I+DNSFTN +YG+R+SLG G N + +N+F   ++YGLYTY GSD+PD  +++GRPSDN F GNTI       GV I E D      N FTG S +EF+D+ +T W  NT
Sbjct:  192 YFEGGGCGTLTQMYEAQ-EGDG-----PLYVLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 1.580e-116
Identity = 222/467 (47.54%), Postives = 273/467 (58.46%), Query Frame = 1
Query:   28 GTISSMRYSSGSGLNGRIYLEDGGCATMTDIYKTRVESDGWTPKGPVYILDGNDDIMYS---PTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEYESDE--TCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGI------------------------AIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASA-DGRPSDNNFYGNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSN 1338
            GTI+S+  SS S          GGCAT+TD+Y T+  S      GP+Y+LD +++I+       S TG WLL S L IL G   Y  GTS GGD D LRIQST   DF E+RG GGSL F  T VTSWDT       +YE GRSFINCV++++  +  +C G+   + GECRMDIIDS MG +GWFD+ESYGLTWKVRG C+D SN E+ D  NVYGDIK S+I+ MYYGMYSYGHQGGVWT+N M DN  YGFDPHDDSD LTIA                               G    GI   +  ++ E+Y                                    A+MESF A+I+DN+  N KYG+R+SLG  +N+++DN FD  S YGLYTY+GSD+PD S  DGR  DN+F  NTISNT   +KI E DD S T N F     FEF+D+ +TVW++N
Sbjct:  396 GTIASISTSSDSSS-----FSGGGCATLTDMYNTQSGS------GPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVY--------------------------GNGNHGIIASKRCNNVEIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFEDSTDTVWTNN 824          
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 7.090e-113
Identity = 213/446 (47.76%), Postives = 266/446 (59.64%), Query Frame = 1
Query:   40 SMRYSSGSGLNGRIYLED------GGCATMTDIYKTRVESDGWTPKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDCDELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSFINCVSEY--ESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVKYGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASADGRPSDNNFYGNTISNTATGVKITEADDTSITGNTF-TGTS---VFEFKDAQNTVWSSNT 1341
            S+RY   +G   R+YLE       GGCAT+  I+++R        K P+Y +D +   + S T  TG WLL  +L++  G      GT  GGD DELR+ ST  T  N +R HGGSL F  T V SWDT   SP +D  DGRS+I+ VSE   + DETC+G  KN  GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD  NVYG++ +SDIHH+ +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   + GIFLHRSSD   V  N VHD  DAG+A++ESF+AD+ +N+F N KYG+R+S+G  +N   +N+    SKY  YTY GSDEPD  + GR  +N F  N+ S     +KI EAD T    N F  G +   V  F DA N+V   NT
Sbjct:   50 SIRY---AGTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSGDV-SETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYIN-LRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNT 483          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7888.19142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI1.050e-17259.12Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI1.360e-17057.70Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE1.600e-16356.46MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRR8_ECTSI3.690e-15352.68Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE2.400e-13760.06MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JNF5_9PHAE9.190e-13350.11MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FIU4_ECTSI7.230e-13055.85Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI5.680e-12851.28Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI1.580e-11647.54Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FXE4_ECTSI7.090e-11347.76Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7888contigF-serratus_M_contig7888:4658..9411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score535.8
Seed ortholog evalue2e-149
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons6
Model size2664
Cds size1428
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7888.19142.1prot_F-serratus_M_contig7888.19142.1Fucus serratus malepolypeptideF-serratus_M_contig7888 5891..9408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932341.0357099-UTR-F-serratus_M_contig7888:4657..58901622932341.0357099-UTR-F-serratus_M_contig7888:4657..5890Fucus serratus maleUTRF-serratus_M_contig7888 4658..5890 -
1690964261.5268888-UTR-F-serratus_M_contig7888:4657..58901690964261.5268888-UTR-F-serratus_M_contig7888:4657..5890Fucus serratus maleUTRF-serratus_M_contig7888 4658..5890 -
1622932341.1576905-UTR-F-serratus_M_contig7888:9408..94111622932341.1576905-UTR-F-serratus_M_contig7888:9408..9411Fucus serratus maleUTRF-serratus_M_contig7888 9409..9411 -
1690964261.5976548-UTR-F-serratus_M_contig7888:9408..94111690964261.5976548-UTR-F-serratus_M_contig7888:9408..9411Fucus serratus maleUTRF-serratus_M_contig7888 9409..9411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932341.0556772-CDS-F-serratus_M_contig7888:5890..60511622932341.0556772-CDS-F-serratus_M_contig7888:5890..6051Fucus serratus maleCDSF-serratus_M_contig7888 5891..6051 -
1690964261.537445-CDS-F-serratus_M_contig7888:5890..60511690964261.537445-CDS-F-serratus_M_contig7888:5890..6051Fucus serratus maleCDSF-serratus_M_contig7888 5891..6051 -
1622932341.0777178-CDS-F-serratus_M_contig7888:6693..68371622932341.0777178-CDS-F-serratus_M_contig7888:6693..6837Fucus serratus maleCDSF-serratus_M_contig7888 6694..6837 -
1690964261.5465329-CDS-F-serratus_M_contig7888:6693..68371690964261.5465329-CDS-F-serratus_M_contig7888:6693..6837Fucus serratus maleCDSF-serratus_M_contig7888 6694..6837 -
1622932341.0925612-CDS-F-serratus_M_contig7888:7516..76811622932341.0925612-CDS-F-serratus_M_contig7888:7516..7681Fucus serratus maleCDSF-serratus_M_contig7888 7517..7681 -
1690964261.5564523-CDS-F-serratus_M_contig7888:7516..76811690964261.5564523-CDS-F-serratus_M_contig7888:7516..7681Fucus serratus maleCDSF-serratus_M_contig7888 7517..7681 -
1622932341.1081913-CDS-F-serratus_M_contig7888:7933..81711622932341.1081913-CDS-F-serratus_M_contig7888:7933..8171Fucus serratus maleCDSF-serratus_M_contig7888 7934..8171 -
1690964261.5666447-CDS-F-serratus_M_contig7888:7933..81711690964261.5666447-CDS-F-serratus_M_contig7888:7933..8171Fucus serratus maleCDSF-serratus_M_contig7888 7934..8171 -
1622932341.1245036-CDS-F-serratus_M_contig7888:8386..90271622932341.1245036-CDS-F-serratus_M_contig7888:8386..9027Fucus serratus maleCDSF-serratus_M_contig7888 8387..9027 -
1690964261.5764277-CDS-F-serratus_M_contig7888:8386..90271690964261.5764277-CDS-F-serratus_M_contig7888:8386..9027Fucus serratus maleCDSF-serratus_M_contig7888 8387..9027 -
1622932341.1418288-CDS-F-serratus_M_contig7888:9329..94081622932341.1418288-CDS-F-serratus_M_contig7888:9329..9408Fucus serratus maleCDSF-serratus_M_contig7888 9330..9408 -
1690964261.5860827-CDS-F-serratus_M_contig7888:9329..94081690964261.5860827-CDS-F-serratus_M_contig7888:9329..9408Fucus serratus maleCDSF-serratus_M_contig7888 9330..9408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7888.19142.1

>prot_F-serratus_M_contig7888.19142.1 ID=prot_F-serratus_M_contig7888.19142.1|Name=mRNA_F-serratus_M_contig7888.19142.1|organism=Fucus serratus male|type=polypeptide|length=476bp
MTIADECTGTISSMRYSSGSGLNGRIYLEDGGCATMTDIYKTRVESDGWT
PKGPVYILDGNDDIMYSPTSVTGKWLLASDLHILRGSIFYCRGTSIGGDC
DELRIQSTGSTDFNEVRGHGGSLYFENTLVTSWDTPNKSPTDDYEDGRSF
INCVSEYESDETCDGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKV
RGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMH
DNHQYGFDPHDDSDYLTIANNEVYDNVNHGIIASKRCNNLKIYGNEVYDG
GAQAVGIFLHRSSDSCEVYDNDVHDMQDAGIAIMESFDADIHDNSFTNVK
YGMRISLGGGNNNVYDNVFDECSKYGLYTYQGSDEPDASADGRPSDNNFY
GNTISNTATGVKITEADDTSITGNTFTGTSVFEFKDAQNTVWSSNTFEDA
DSDLCYKNFESSTFASTDDTLPSLC*
back to top

mRNA from alignment at F-serratus_M_contig7888:4658..9411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7888.19142.1 ID=mRNA_F-serratus_M_contig7888.19142.1|Name=mRNA_F-serratus_M_contig7888.19142.1|organism=Fucus serratus male|type=mRNA|length=4754bp|location=Sequence derived from alignment at F-serratus_M_contig7888:4658..9411- (Fucus serratus male)
ACCATGACTATCGCAGACGAGTGTACTGGCACCATATCTTCCATGCGCTA TTCGTCCGGCTCCGGACTCAACGGCCGCATTTGTGAGTGCCGTACTGATC TCCTTGGATTGGTCATTCGTGATCGTGATCTTTCTTGCCTTATATGCCGA TGCCGCACCAGTTTGGTATTTCAGCATTTCCATGAGATTCTGACGAGCAG TTGTGCGTACTGTCGTATTATCTATCACTCTGTTAGTCGGTTCGAGGTAA ATGTCGTTTTAACCTGCCTAGAGTATGGTAACTGCACGTTTGTGCGCATA CCCGATCGTTTTCCGATCATTCTTCAATCTGACCTCATGGCTTCCTTTCA TGTCATGTATTTTCTGTAATCGTCGTCCATTCAGACCTCGAAGATGGAGG CTGCGCCACCATGACCGACATCTACAAGACTCGCGTGGAGAGCGATGGCT GGACCCCAAAGGGCCCTGTCTACATCCTCGACGGCAACGACGACATCATG TACAGCCCCACTAGCGTGACAGGCAAGTGGCTCCTCGCGTCCGACCTGCA TATCCTCAGAGGGTCCATCTTCTACTGCCGCGGGACCAGCATAGGCGGCG ACTGCGACGAACTGCGAATCCAGTCTACCGGCTCCACCGACTTCAACGAG GTGCGTGGTCACGGTGGCAGCCTGTACTTCGAGAACACCCTTGTCACCTC CTGGGATACCCCAAACAAGAGCCCAACGGATGATTACGAGGACGGCCGCT CGTTCATCAACTGCGTGTCTGAGTATGAATCGGACGAGACGTGTGACGGC CAGCCCAAGAATGACTACGGGGAGTGCCGCATGGATATAATCGACTCCGA GATGGGCTACCTGGGGTGGTTCGACTCGGAGTCTTACGGTCTAACCTGGA AGGTCCGCGGGTTCTGCGCCGACAAGAGCAACCCGGAAGTGTTCGACACA ACGAACGTGTACGGTGACATCAAGAACTCCGATATTCACCACATGTACTA CGGAATGTATTCCTACGGCCACCAGGTGACCAAGTAGATATAGCGATATT CCCGTCGATGTCATGAGAGCGATTTCGGTGGTATGTAATGCTTCACTTGG CTTGTTTCTGTCCACCGCACGTAAAATAGATACTATTAATAGTGTGTGCA TGACCCATCCACGTGCGCACCAATCTTGACGATGTACTATGCCTCCGACG CGGGCATATCGTTTCCTCATTTGTTTCTCTGATATGGCAGGGCGGCGTGT GGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCGACCCCCAC GATGACTCCGATTACCTCACCATCGCCAACAACGAGGTCTACGACAACGT GAACCATGGTATCATCGCGTCGAAGCGTTGCAACAATCTCAAAATCTACG GAAACGAGGTCTACGATGGCGGCGCGCAGGCTGTGGGCATCTTCCTCCAC CGAAGCTCTGACAGCTGCGAGGTCTACGGTGAGTTTAGAAATAACTTTTC AGCTTCGGTTTAATTGGCCAAGGCGTGGAACTTGAGACGTCTACACCGCA TCGGATGCCGTTAGGTATATTCCCCCCATATGCGACCATTTACATTGAAC CCTGCTGATGCCTTATCGCTCGTTTTCCATATCTCTTCCGTGTGCAGCTA TTTAGTAGTTACACTGACGTTTCGCTCGTCTTCTACCCCACCTGCGGATC GCCCTGTACCAAATCGGGTTCGTATCGTAGACAATGATGTGCACGACATG CAGGATGCTGGTATAGCCATCATGGAGTCTTTCGACGCTGATATTCACGA CAACAGCTTCACGAACGTCAAGTACGGCATGCGTATCAGCCTGGGCGGAG GGAACAACAACGTGTACGATAACGTGTTCGACGAATGTTCAAAGTGTGAG TACCCATCTACAGTTTATGGTTTACGTTTTTTCCCCTCGAAAACGCAAGC ATGTCGCTTGTATCAACATATACATACATACATACATACATGCATACATA CATACATACATACATACATACATACATACATACATACATATGTGTAATTT AATAAAGATACATACATATGTACCTAGGTTCAACATTGGATTGAAAACGC ACGTACGATCTACCTATGTGATGTGCAAATATGTGTAAAGTTATTGCTCC ACCGCTTTAGTATTAATAGACCAATCAGCAGAAAAATAATACACCGAGTT TTGGTGCTAGGTTCGAGTGTCGAGAGCATTTTTTTCAAATTACTTGTACA ACAGTAAGAGTGATAAATTTCCAAGGTTACACCTCCCGTTTCCCGGAAGA AAAGTCGTGCGCTCGGCAACAACATTTGGAGATTGTTTGATGGACGAGTA GAGTAGGATACACTAGGATACTACTATTATACTAATACCGTACTTGCCCT GTAGGTACAGTACATTATAGGTCGTATGGAAGATTCGGACTTGAACACGA ATATGCGGGAAATGCCAGTCGCTCCAAACCTCATTACAGTTTCCCTACCA CTGGCCACCCATCATTTGTTTGTTTCCCGTCTCCCTTTGTACACGCATCG TACTCCGCTCGGTTCTACTTGCAGACGGTCTGTACACTTACCAGGGTTCC GATGAGCCTGATGCGTCTGCCGACGGGCGGCCTAGCGATAACAACTTCTA CGGCAATACCATCTCCAACACCGCGACGGGCGTCAAGATCACAGAAGCGG ACGACACCTCCATCACTGGTGAGACGAAATTTTAAAGAGAGCTCTACCCC TTTGTGTGCTACAAAACAAGTTGGTGTCCAATACGGGTTCCCATGTCTAG GGATACGTGTGCTTTCTGCCAGGCTTCCTGAAGTGCAGTGGATTGGGCAT TTTGTTTTATGTGAGTGGGCTTCACGGAAGGAGGTCTGTCTAGACCACCT CTCGAGACACAGAAGAGCAGCAAAGTGAACCTACCTGTCTAGAGAATCTC ATTCAACATTTGGGGAGGGGAGGGGGGGGGATTCGACGATTCCACACCAA AGATATCAACGGAACAGCCACTTCAGGGGACAGGACAACATGATCCCCTG TATCGTCGGCAAGCGTGCTACGAATCGAACTCCTTTCACAAAGTGGGTTC GGTCAAATATGTCCCCGGGATGGGGGCTATTTTCGTGCCGTACCCTCCCA AACCGGGGAAACAATTCCAACATCTCCCCCCTCCATTCATTGAACGATGC TGAAGCTGAAGCCTCTTACGACTTCGAGGAAAGAGTCGCACGAGAATATG TCGATTATGGAAGTGCTAGAAGTTTCCGATATCGAGACGTTCATTTGATA TGCCGCTGCTGGACCCTGAATTCGGGGTTGACTCTAATCGTCCTGCGTTG CTCTGAGCAGGTAACACCTTTACCGGAACCTCTGTTTTTGAGTTCAAGGA CGCCCAGAACACGGTGTGGTCAAGCAACACGTTTGAGGACGCTGACTCAG ATCTCTGCTACAAGAACTTTGAAAGCAGCACTTTTGCATCTACCGATGAC ACTCTGCCCTCTCTGTGCTAGAATGATTGCGGCAGATGACCCTTGCCTGC TTTCCGAGGAGTAAGGGTCTATGTACTGGGCAAAACTCATCAAGTGAACA GCCTAAACATTGAACCGGTAACTGGGGCGGCGTAGACGAAAACAGAAAGA AGGCGAGGGAGTATAACATCCTGTGCCGTGACGTTTGGCCATAAGTATTC ACGAGGCTTTTCACCTGAGATATTGTTGGTGTTTCGATTAATTATTTATA ATAGATCCACAACGCTTGGTTGCGATGCTTTTCGGAGACAACCTTGGTTG ATATTTGGGTAACATAACATAATTCGTACTAGTGCTTGATAATGGTATCA CAAGGAAGGAGGGGGGAAATGGGGGTGAGTTCTTGACACGCTCCTACGAC GATGCGTGCCCCACTCTGGCGCCCATTGATGAATTGCGTAACCCTTCCAC GTCTGGCACAGCACCACGAACCCGTGGTGTTCATGACATCTCGGTACAAA GAATGCCTCGGCATCTGGCCTTCCGGTATATCTACTTGTGAGTCATGTTG TGTCATTCAACTGAGAATTGATTATATTTTCGCCTCATGCGGCTCGATAG TGGATACTAATACTAATATCGTAGAGCTTGGCTTGAAAGGGTTGTAGTGT TAAAGTGTATTGTGCTATCGGCGGCCACGCAAGGCGGAAGGGCGGGCACC CTTCAAACGCGCATGTATTGGAACTGTTGTCATTAGCCATCGAAACATTT TGGTGATGTTGTGTTTCTGGGGAGACCTTCGGTCCACGTCAGACCCACCT CTGTACTACGGCCGACGGGGAAGCAAATTTTGTAACACGTACCTCCTGTA GTGTTTGCCTAATGTAAGTGCCTTGTACATGGTACATGCTTGCATTATCC GGCCTTCGAGAGGGGTCCGGTCATTCATGTGATCTTTGCACTAGCCCGGC GTTATCGTGTAGCGTTGTCTAGCCCGGCGTTATCGCGTAGCGTTGTCTGA GAACTAGTGTTGTGCACATTTCCATGGATGATGTGGGAGTCGTCTTTCAC CTTCCCCGTCCTATTATTTTTGCTTTTATTATTATATTAGTGGATGTCTT CTCATTTGACACTCTGTCTTGTACAAGGTACATGCTTGCATTGTCCAGCC TTCGAGAGGGGTCCGGTCATGTGATTTGCACTAGCCCGGCGTTATCGTGT AGCGTTGTCTAGCCCGGCGCTATCGCGTAGCGTTGTCTCAAGAGAGTATT GTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7888:4658..9411-

>mRNA_F-serratus_M_contig7888.19142.1 ID=mRNA_F-serratus_M_contig7888.19142.1|Name=mRNA_F-serratus_M_contig7888.19142.1|organism=Fucus serratus male|type=CDS|length=2856bp|location=Sequence derived from alignment at F-serratus_M_contig7888:4658..9411- (Fucus serratus male)
ATGACTATCGCAGACGAGTGTACTGGCACCATATCTTCCATGCGCTATTC
GTCCGGCTCCGGACTCAACGGCCGCATTTATGACTATCGCAGACGAGTGT
ACTGGCACCATATCTTCCATGCGCTATTCGTCCGGCTCCGGACTCAACGG
CCGCATTTACCTCGAAGATGGAGGCTGCGCCACCATGACCGACATCTACA
AGACTCGCGTGGAGAGCGATGGCTGGACCCCAAAGGGCCCTGTCTACATC
CTCGACGGCAACGACGACATCATGTACAGCCCCACTAGCGTGACAGGCAA
GTGGCTCCTCGCGTCCGACCTGCATATCCTCAGAGGGTCCATCTTCTACT
GCCGCGGGACCAGCATAGGCGGCGACTGCGACGAACTGCGAATCCAGTCT
ACCGGCTCCACCGACTTCAACGAGGTGCGTGGTCACGGTGGCAGCCTGTA
CTTCGAGAACACCCTTGTCACCTCCTGGGATACCCCAAACAAGAGCCCAA
CGGATGATTACGAGGACGGCCGCTCGTTCATCAACTGCGTGTCTGAGTAT
GAATCGGACGAGACGTGTGACGGCCAGCCCAAGAATGACTACGGGGAGTG
CCGCATGGATATAATCGACTCCGAGATGGGCTACCTGGGGTGGTTCGACT
CGGAGTCTTACGGTCTAACCTGGAAGGTCCGCGGGTTCTGCGCCGACAAG
AGCAACCCGGAAGTGTTCGACACAACGAACGTGTACGGTGACATCAAGAA
CTCCGATATTCACCACATGTACTACGGAATGTATTCCTACGGCCACCAGA
CCTCGAAGATGGAGGCTGCGCCACCATGACCGACATCTACAAGACTCGCG
TGGAGAGCGATGGCTGGACCCCAAAGGGCCCTGTCTACATCCTCGACGGC
AACGACGACATCATGTACAGCCCCACTAGCGTGACAGGCAAGTGGCTCCT
CGCGTCCGACCTGCATATCCTCAGAGGGTCCATCTTCTACTGCCGCGGGA
CCAGCATAGGCGGCGACTGCGACGAACTGCGAATCCAGTCTACCGGCTCC
ACCGACTTCAACGAGGTGCGTGGTCACGGTGGCAGCCTGTACTTCGAGAA
CACCCTTGTCACCTCCTGGGATACCCCAAACAAGAGCCCAACGGATGATT
ACGAGGACGGCCGCTCGTTCATCAACTGCGTGTCTGAGTATGAATCGGAC
GAGACGTGTGACGGCCAGCCCAAGAATGACTACGGGGAGTGCCGCATGGA
TATAATCGACTCCGAGATGGGCTACCTGGGGTGGTTCGACTCGGAGTCTT
ACGGTCTAACCTGGAAGGTCCGCGGGTTCTGCGCCGACAAGAGCAACCCG
GAAGTGTTCGACACAACGAACGTGTACGGTGACATCAAGAACTCCGATAT
TCACCACATGTACTACGGAATGTATTCCTACGGCCACCAGGGCGGCGTGT
GGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCGACCCCCAC
GATGACTCCGATTACCTCACCATCGCCAACAACGAGGTCTACGACAACGT
GAACCATGGTATCATCGCGTCGAAGCGTTGCAACAATCTCAAAATCTACG
GAAACGAGGTCTACGATGGCGGCGCGCAGGCTGTGGGCATCTTCCTCCAC
CGAAGCTCTGACAGCTGCGAGGTCTACGGGCGGCGTGTGGACGAACAACA
AGATGCACGACAACCACCAGTACGGTTTCGACCCCCACGATGACTCCGAT
TACCTCACCATCGCCAACAACGAGGTCTACGACAACGTGAACCATGGTAT
CATCGCGTCGAAGCGTTGCAACAATCTCAAAATCTACGGAAACGAGGTCT
ACGATGGCGGCGCGCAGGCTGTGGGCATCTTCCTCCACCGAAGCTCTGAC
AGCTGCGAGGTCTACGACAATGATGTGCACGACATGCAGGATGCTGGTAT
AGCCATCATGGAGTCTTTCGACGCTGATATTCACGACAACAGCTTCACGA
ACGTCAAGTACGGCATGCGTATCAGCCTGGGCGGAGGGAACAACAACGTG
TACGATAACGTGTTCGACGAATGTTCAAAGTACAATGATGTGCACGACAT
GCAGGATGCTGGTATAGCCATCATGGAGTCTTTCGACGCTGATATTCACG
ACAACAGCTTCACGAACGTCAAGTACGGCATGCGTATCAGCCTGGGCGGA
GGGAACAACAACGTGTACGATAACGTGTTCGACGAATGTTCAAAGTACGG
TCTGTACACTTACCAGGGTTCCGATGAGCCTGATGCGTCTGCCGACGGGC
GGCCTAGCGATAACAACTTCTACGGCAATACCATCTCCAACACCGCGACG
GGCGTCAAGATCACAGAAGCGGACGACACCTCCATCACTGACGGTCTGTA
CACTTACCAGGGTTCCGATGAGCCTGATGCGTCTGCCGACGGGCGGCCTA
GCGATAACAACTTCTACGGCAATACCATCTCCAACACCGCGACGGGCGTC
AAGATCACAGAAGCGGACGACACCTCCATCACTGGTAACACCTTTACCGG
AACCTCTGTTTTTGAGTTCAAGGACGCCCAGAACACGGTGTGGTCAAGCA
ACACGTTTGAGGACGCTGACTCAGATCTCTGCTACAAGAACTTTGAAAGC
AGCACTTTTGCATCTACCGATGACACTCTGCCCTCTCTGTGCTAGGTAAC
ACCTTTACCGGAACCTCTGTTTTTGAGTTCAAGGACGCCCAGAACACGGT
GTGGTCAAGCAACACGTTTGAGGACGCTGACTCAGATCTCTGCTACAAGA
ACTTTGAAAGCAGCACTTTTGCATCTACCGATGACACTCTGCCCTCTCTG
TGCTAG
back to top