mRNA_F-serratus_M_contig1257.1913.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI) HSP 1 Score: 298 bits (763), Expect = 4.390e-97 Identity = 171/294 (58.16%), Postives = 199/294 (67.69%), Query Frame = 1
Query: 193 SAVSVEVISPREVALDLPPVADDARWGYTVKWFLEDSPIIFDQVTTVSQSRLKLINLAPARSYVALVRRVGSL----------ETSTARVEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCV-----TIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPD----GVASWEDLAMETSCGGACTSSVL-GRVR 1014
S+ + V+S RE ++LPP+ D GY+VKWF ED+P IFDQ T QSRL L +L+P YVA+VRR + + + + FSTPEAEGNA+G M ELSRLEIRVGRC+E SKHPDADSLYVE VDFG+GEPRC+ TIVS LV YV E EMR R+VVGLCNLP RAMRGVTS GMLLCASN+DH+ VDPLSPPE A +G+LITF VLSAP+PP S A+RAWSA ME MKT GVA W+ M TS G ACTSS+ GRVR
Sbjct: 15 SSAAASVVSAREAVVELPPLGGDGV-GYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEAEGNASGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS-------------VDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTAEATADGVGVAGWDGRPMLTSAG-ACTSSIAAGRVR 293
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE) HSP 1 Score: 218 bits (555), Expect = 2.000e-67 Identity = 123/185 (66.49%), Postives = 136/185 (73.51%), Query Frame = 1
Query: 475 MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPD----GVASWEDLAMETSCGGACTSSVL-GRVR 1014
M ELSRLEIRVGRC+E SKHPDADSLYVE +DFG+GEPR TIVSGLV YV E+EMR R+VVGLCNLP RAMRGVTS GMLLCASN+DH+ VDPLSPPE A +G+LITF GVLSAP+PP S A+RAWSA E MKT GVA W+ M TS G ACTSS+ GRVR
Sbjct: 1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPR--TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS-------------VDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPMLTSAG-ACTSSIAAGRVR 169
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD) HSP 1 Score: 167 bits (423), Expect = 4.810e-46 Identity = 107/246 (43.50%), Postives = 142/246 (57.72%), Query Frame = 1
Query: 271 GYTVKWFLEDSPIIFDQVTTVSQSRLKLINLAPARSYVALVRRVGSLE----TSTARVEFSTPEAEGNATGV------MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCG 978
Y V + + +P F TV++S + L L+P SY + + S + S + TPE+ G + +TELSRLEIR G V+ KHP+AD+LYVE +D G+ EPR TIVSGLV ++SEEE+ R VV LCNL PR MRG+ S GMLLCASN DH+ VDPLSPPEE G+LITF G SAP PG+ A +A+ +++ T DG+A ++D A +T G
Sbjct: 51 AYRVAYKSDSNPASF---RTVTRSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMSAETPESAGAESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPR--TIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSE-------------VDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTN-EDGIAQYQDAAFKTPFG 277
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR) HSP 1 Score: 163 bits (413), Expect = 1.090e-44 Identity = 109/236 (46.19%), Postives = 141/236 (59.75%), Query Frame = 1
Query: 331 VSQSRLKLINLAPARSYVALVRRVG-SLETSTARVEFST---PEAEGNATGV----MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTS-SVLGRV 1011
V+ R+ L L P Y VR G + ++ST+ +T P A G+ +TELSRLEIRVG+ +E KHPDAD+LYVEKVD G+ EPR TIVSGLV Y+ E+M R VV LCNL PRAMRGVTS GMLLCASNEDHT VDPL P++ +G+L+TF G SAP P + A +A+ + + T GVA +ED+ TS G ++ +V+G +
Sbjct: 61 VAHPRVNLKGLKPGTPYD--VRVTGDAFDSSTSFTTVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPR--TIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTV-------------VDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEA-GVAMFEDVPFSTSAGPCFSAENVIGSI 278
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD) HSP 1 Score: 160 bits (405), Expect = 4.490e-44 Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 1
Query: 475 MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTS 993
+TELSRLEIRVG+ VE +HPDAD+LYVEKVD G+ EPR TIVSGLV ++S+EE+ R V+ LCNL PRAMRG+ S GMLLCASNEDHT+ VDPL+ P +A +G LITF G +AP G+ A++A+ E T A DG+A + T G AC S
Sbjct: 68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPR--TIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTK-------------VDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDA-DGIARFNATPFMTEAG-ACYS 223
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD) HSP 1 Score: 161 bits (408), Expect = 2.450e-43 Identity = 112/245 (45.71%), Postives = 133/245 (54.29%), Query Frame = 1
Query: 328 TVSQSRLKLINLAPARSYVALVRRV-GSLETSTARVEFST------------------PEAEGNATG----VMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTS 993
TVSQ ++L + PA SY A ++ + GS +F T P EG +TE SRLEIRVGR +E KHPDAD+LYVEKVD G EP TIVSGLV YV +EM R VV LCNL PRAMRGVTS GMLLCASNEDHT VDPL+ PE+ +G LIT G SAP G+ A++A+ + +T DG+A ED A T G C S
Sbjct: 98 TVSQPMVRLAGMRPAVSYTAGIQPLFGSAANEWRTTQFRTHAISGGEIDAVGQDPVGVPAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVG--EPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTE-------------VDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDRVAAQFRTDG-DGIAYVEDAAFSTP-NGPCYS 325
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA) HSP 1 Score: 156 bits (394), Expect = 5.100e-41 Identity = 96/204 (47.06%), Postives = 122/204 (59.80%), Query Frame = 1
Query: 382 VALVRRVGSLETSTARVEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGE-PRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACT 990
V V R G E R T + G +TELSRLEIR G+ +EIS+HP+AD LYVEK+D G+ + PR TIVSGLV Y +EEE+ R VV L NL PRA++G+TS GMLLCASNEDHT V PLSPP +G+LITF G +AP PPG+ A +A+ EE+ D +A+++ + TS G T
Sbjct: 166 VVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPR--TIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTV-------------VKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGA-GEDMIATYKGIPFMTSKGPVTT 353
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP) HSP 1 Score: 151 bits (381), Expect = 3.250e-40 Identity = 93/194 (47.94%), Postives = 123/194 (63.40%), Query Frame = 1
Query: 397 RVGSLETSTARVEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCG 978
R+ SLE +A +E + EG + +TELSRLEIRVG+ ++ KHP+ADSLYVE+VD GD E IVSGLV +V EEM DR V+ LCNL PR MRG++S GMLLCASNEDH++ VDPL+ PE +G L+TF G S P+P G+ A++A+ + ++T A GVA +E + T G
Sbjct: 68 RMSSLEDGSAALETAAGN-EGESLP-LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGD-ESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQ-------------VDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDAT-GVAMFEQVPFATPSG 244
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA) HSP 1 Score: 149 bits (377), Expect = 9.160e-40 Identity = 89/194 (45.88%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 430 VEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTSSVLGRV 1011
V+ E G + E SRLEIRVG+ V++S HPDAD LYVEK+D G+ EPR TIVSGLV Y+ E++ DR VV L NL PRAMRG+TS GMLLCASNEDH++ V PLSPPE + G+LIT G LS P P + A++A+ +++ D + + D + G CTS++ G +
Sbjct: 68 VDTDAKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPR--TIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQ-------------VVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVN--DDLQATFDGKPFLTPNGPCTSTMKGAI 244
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.410e-38 Identity = 87/183 (47.54%), Postives = 114/183 (62.30%), Query Frame = 1
Query: 385 ALVRRVGSLETSTARVEFSTPEAEGNA---TGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGE---PRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEM 915
A +RR ++ T + + E E TG +TEL+RLEIR+G+ VEI++HPDADSLYVEKVD G GE PR TIVSGLV + E ++ R VV LCNL P M+GVTS GMLLC+SNEDH++ V+PL PPE +G+L+TF G L +P G+ A +AW A + +
Sbjct: 56 AALRRPTAVRTMMMMSDAAVTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPR--TIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSK-------------VEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTL 223 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1257.1913.1 >prot_F-serratus_M_contig1257.1913.1 ID=prot_F-serratus_M_contig1257.1913.1|Name=mRNA_F-serratus_M_contig1257.1913.1|organism=Fucus serratus male|type=polypeptide|length=335bp MAATWLRLLVAWYTLARSSGFAAIRRPFLSISPSSARDSRTHGASTIPSCback to top mRNA from alignment at F-serratus_M_contig1257:93442..95753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1257.1913.1 ID=mRNA_F-serratus_M_contig1257.1913.1|Name=mRNA_F-serratus_M_contig1257.1913.1|organism=Fucus serratus male|type=mRNA|length=2312bp|location=Sequence derived from alignment at F-serratus_M_contig1257:93442..95753- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1257:93442..95753- >mRNA_F-serratus_M_contig1257.1913.1 ID=mRNA_F-serratus_M_contig1257.1913.1|Name=mRNA_F-serratus_M_contig1257.1913.1|organism=Fucus serratus male|type=CDS|length=2010bp|location=Sequence derived from alignment at F-serratus_M_contig1257:93442..95753- (Fucus serratus male)back to top |