mRNA_F-serratus_M_contig1257.1913.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1257.1913.1
Unique NamemRNA_F-serratus_M_contig1257.1913.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: D7FK87_ECTSI (Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK87_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 4.390e-97
Identity = 171/294 (58.16%), Postives = 199/294 (67.69%), Query Frame = 1
Query:  193 SAVSVEVISPREVALDLPPVADDARWGYTVKWFLEDSPIIFDQVTTVSQSRLKLINLAPARSYVALVRRVGSL----------ETSTARVEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCV-----TIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPD----GVASWEDLAMETSCGGACTSSVL-GRVR 1014
            S+ +  V+S RE  ++LPP+  D   GY+VKWF ED+P IFDQ T   QSRL L +L+P   YVA+VRR  +           + +   + FSTPEAEGNA+G M ELSRLEIRVGRC+E SKHPDADSLYVE VDFG+GEPRC+     TIVS LV YV E EMR R+VVGLCNLP RAMRGVTS GMLLCASN+DH+              VDPLSPPE A +G+LITF  VLSAP+PP S A+RAWSA ME MKT        GVA W+   M TS G ACTSS+  GRVR
Sbjct:   15 SSAAASVVSAREAVVELPPLGGDGV-GYSVKWFEEDNPAIFDQATASLQSRLVLSDLSPGTEYVAVVRRTATAAAAAPAGEAGDNAARELRFSTPEAEGNASGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS-------------VDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTAEATADGVGVAGWDGRPMLTSAG-ACTSSIAAGRVR 293          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 2.000e-67
Identity = 123/185 (66.49%), Postives = 136/185 (73.51%), Query Frame = 1
Query:  475 MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPD----GVASWEDLAMETSCGGACTSSVL-GRVR 1014
            M ELSRLEIRVGRC+E SKHPDADSLYVE +DFG+GEPR  TIVSGLV YV E+EMR R+VVGLCNLP RAMRGVTS GMLLCASN+DH+              VDPLSPPE A +G+LITF GVLSAP+PP S A+RAWSA  E MKT        GVA W+   M TS G ACTSS+  GRVR
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPR--TIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSS-------------VDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPMLTSAG-ACTSSIAAGRVR 169          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 4.810e-46
Identity = 107/246 (43.50%), Postives = 142/246 (57.72%), Query Frame = 1
Query:  271 GYTVKWFLEDSPIIFDQVTTVSQSRLKLINLAPARSYVALVRRVGSLE----TSTARVEFSTPEAEGNATGV------MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCG 978
             Y V +  + +P  F    TV++S + L  L+P  SY   +  + S +     S   +   TPE+ G  +        +TELSRLEIR G  V+  KHP+AD+LYVE +D G+ EPR  TIVSGLV ++SEEE+  R VV LCNL PR MRG+ S GMLLCASN DH+              VDPLSPPEE   G+LITF G  SAP  PG+ A +A+    +++ T   DG+A ++D A +T  G
Sbjct:   51 AYRVAYKSDSNPASF---RTVTRSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMSAETPESAGAESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPR--TIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSE-------------VDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTN-EDGIAQYQDAAFKTPFG 277          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 163 bits (413), Expect = 1.090e-44
Identity = 109/236 (46.19%), Postives = 141/236 (59.75%), Query Frame = 1
Query:  331 VSQSRLKLINLAPARSYVALVRRVG-SLETSTARVEFST---PEAEGNATGV----MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTS-SVLGRV 1011
            V+  R+ L  L P   Y   VR  G + ++ST+    +T   P A G+        +TELSRLEIRVG+ +E  KHPDAD+LYVEKVD G+ EPR  TIVSGLV Y+  E+M  R VV LCNL PRAMRGVTS GMLLCASNEDHT              VDPL  P++  +G+L+TF G  SAP  P + A +A+    + + T    GVA +ED+   TS G   ++ +V+G +
Sbjct:   61 VAHPRVNLKGLKPGTPYD--VRVTGDAFDSSTSFTTVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPR--TIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTV-------------VDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEA-GVAMFEDVPFSTSAGPCFSAENVIGSI 278          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 160 bits (405), Expect = 4.490e-44
Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 1
Query:  475 MTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTS 993
            +TELSRLEIRVG+ VE  +HPDAD+LYVEKVD G+ EPR  TIVSGLV ++S+EE+  R V+ LCNL PRAMRG+ S GMLLCASNEDHT+             VDPL+ P +A +G LITF G  +AP   G+ A++A+     E  T A DG+A +      T  G AC S
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPR--TIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTK-------------VDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDA-DGIARFNATPFMTEAG-ACYS 223          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 161 bits (408), Expect = 2.450e-43
Identity = 112/245 (45.71%), Postives = 133/245 (54.29%), Query Frame = 1
Query:  328 TVSQSRLKLINLAPARSYVALVRRV-GSLETSTARVEFST------------------PEAEGNATG----VMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTS 993
            TVSQ  ++L  + PA SY A ++ + GS        +F T                  P  EG         +TE SRLEIRVGR +E  KHPDAD+LYVEKVD G  EP   TIVSGLV YV  +EM  R VV LCNL PRAMRGVTS GMLLCASNEDHT              VDPL+ PE+  +G LIT  G  SAP   G+ A++A+     + +T   DG+A  ED A  T   G C S
Sbjct:   98 TVSQPMVRLAGMRPAVSYTAGIQPLFGSAANEWRTTQFRTHAISGGEIDAVGQDPVGVPAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVG--EPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTE-------------VDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDRVAAQFRTDG-DGIAYVEDAAFSTP-NGPCYS 325          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.100e-41
Identity = 96/204 (47.06%), Postives = 122/204 (59.80%), Query Frame = 1
Query:  382 VALVRRVGSLETSTARVEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGE-PRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACT 990
            V  V R G  E    R    T +      G +TELSRLEIR G+ +EIS+HP+AD LYVEK+D G+ + PR  TIVSGLV Y +EEE+  R VV L NL PRA++G+TS GMLLCASNEDHT              V PLSPP    +G+LITF G  +AP PPG+ A +A+    EE+     D +A+++ +   TS G   T
Sbjct:  166 VVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPR--TIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTV-------------VKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGA-GEDMIATYKGIPFMTSKGPVTT 353          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 151 bits (381), Expect = 3.250e-40
Identity = 93/194 (47.94%), Postives = 123/194 (63.40%), Query Frame = 1
Query:  397 RVGSLETSTARVEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCG 978
            R+ SLE  +A +E +    EG +   +TELSRLEIRVG+ ++  KHP+ADSLYVE+VD GD E     IVSGLV +V  EEM DR V+ LCNL PR MRG++S GMLLCASNEDH++             VDPL+ PE   +G L+TF G  S P+P G+ A++A+    + ++T A  GVA +E +   T  G
Sbjct:   68 RMSSLEDGSAALETAAGN-EGESLP-LTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGD-ESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQ-------------VDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDAT-GVAMFEQVPFATPSG 244          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 9.160e-40
Identity = 89/194 (45.88%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  430 VEFSTPEAEGNATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEMKTRAPDGVASWEDLAMETSCGGACTSSVLGRV 1011
            V+    E      G + E SRLEIRVG+ V++S HPDAD LYVEK+D G+ EPR  TIVSGLV Y+  E++ DR VV L NL PRAMRG+TS GMLLCASNEDH++             V PLSPPE +  G+LIT  G LS P  P + A++A+    +++     D + +  D     +  G CTS++ G +
Sbjct:   68 VDTDAKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPR--TIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQ-------------VVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVN--DDLQATFDGKPFLTPNGPCTSTMKGAI 244          
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.410e-38
Identity = 87/183 (47.54%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  385 ALVRRVGSLETSTARVEFSTPEAEGNA---TGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGE---PRCVTIVSGLVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTLLTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEEM 915
            A +RR  ++ T     + +  E E      TG +TEL+RLEIR+G+ VEI++HPDADSLYVEKVD G GE   PR  TIVSGLV +  E ++  R VV LCNL P  M+GVTS GMLLC+SNEDH++             V+PL PPE   +G+L+TF G L +P   G+ A +AW  A + +
Sbjct:   56 AALRRPTAVRTMMMMSDAAVTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPR--TIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSK-------------VEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTL 223          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1257.1913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK87_ECTSI4.390e-9758.16Similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
A0A6H5KCD4_9PHAE2.000e-6766.49tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A7S0FZY8_9RHOD4.810e-4643.50Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IUX7_9FLOR1.090e-4446.19Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0ZE83_9RHOD4.490e-4453.18Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A7S1TKX4_9RHOD2.450e-4345.71Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
W7U6C4_9STRA5.100e-4147.06Endothelial monocyte-activating polypeptide ii pro... [more]
A0A5J4Z2W6_PORPP3.250e-4047.94Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
A0A7S2V4I0_9STRA9.160e-4045.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FMW6_ECTSI1.410e-3847.54Endothelial monocyte-activating polypeptide II pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1257contigF-serratus_M_contig1257:93442..95753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue1.3e-78
Seed eggNOG ortholog2880.D7FK87
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorysignal peptide
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-17_003170.1
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons6
Model size1017
Cds size1005
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.9480157-CDS-F-serratus_M_contig1257:93441..936781622929179.9480157-CDS-F-serratus_M_contig1257:93441..93678Fucus serratus maleCDSF-serratus_M_contig1257 93442..93678 -
1690962739.4228003-CDS-F-serratus_M_contig1257:93441..936781690962739.4228003-CDS-F-serratus_M_contig1257:93441..93678Fucus serratus maleCDSF-serratus_M_contig1257 93442..93678 -
1622929179.9628477-CDS-F-serratus_M_contig1257:93903..940871622929179.9628477-CDS-F-serratus_M_contig1257:93903..94087Fucus serratus maleCDSF-serratus_M_contig1257 93904..94087 -
1690962739.4339914-CDS-F-serratus_M_contig1257:93903..940871690962739.4339914-CDS-F-serratus_M_contig1257:93903..94087Fucus serratus maleCDSF-serratus_M_contig1257 93904..94087 -
1622929179.9734309-CDS-F-serratus_M_contig1257:94377..945231622929179.9734309-CDS-F-serratus_M_contig1257:94377..94523Fucus serratus maleCDSF-serratus_M_contig1257 94378..94523 -
1690962739.4434676-CDS-F-serratus_M_contig1257:94377..945231690962739.4434676-CDS-F-serratus_M_contig1257:94377..94523Fucus serratus maleCDSF-serratus_M_contig1257 94378..94523 -
1622929179.994247-CDS-F-serratus_M_contig1257:94678..948071622929179.994247-CDS-F-serratus_M_contig1257:94678..94807Fucus serratus maleCDSF-serratus_M_contig1257 94679..94807 -
1690962739.45351-CDS-F-serratus_M_contig1257:94678..948071690962739.45351-CDS-F-serratus_M_contig1257:94678..94807Fucus serratus maleCDSF-serratus_M_contig1257 94679..94807 -
1622929180.004832-CDS-F-serratus_M_contig1257:94956..952071622929180.004832-CDS-F-serratus_M_contig1257:94956..95207Fucus serratus maleCDSF-serratus_M_contig1257 94957..95207 -
1690962739.462993-CDS-F-serratus_M_contig1257:94956..952071690962739.462993-CDS-F-serratus_M_contig1257:94956..95207Fucus serratus maleCDSF-serratus_M_contig1257 94957..95207 -
1622929180.0173962-CDS-F-serratus_M_contig1257:95683..957411622929180.0173962-CDS-F-serratus_M_contig1257:95683..95741Fucus serratus maleCDSF-serratus_M_contig1257 95684..95741 -
1690962739.4719646-CDS-F-serratus_M_contig1257:95683..957411690962739.4719646-CDS-F-serratus_M_contig1257:95683..95741Fucus serratus maleCDSF-serratus_M_contig1257 95684..95741 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929180.0357351-UTR-F-serratus_M_contig1257:95741..957531622929180.0357351-UTR-F-serratus_M_contig1257:95741..95753Fucus serratus maleUTRF-serratus_M_contig1257 95742..95753 -
1690962739.4817069-UTR-F-serratus_M_contig1257:95741..957531690962739.4817069-UTR-F-serratus_M_contig1257:95741..95753Fucus serratus maleUTRF-serratus_M_contig1257 95742..95753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1257.1913.1prot_F-serratus_M_contig1257.1913.1Fucus serratus malepolypeptideF-serratus_M_contig1257 93442..95741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1257.1913.1

>prot_F-serratus_M_contig1257.1913.1 ID=prot_F-serratus_M_contig1257.1913.1|Name=mRNA_F-serratus_M_contig1257.1913.1|organism=Fucus serratus male|type=polypeptide|length=335bp
MAATWLRLLVAWYTLARSSGFAAIRRPFLSISPSSARDSRTHGASTIPSC
AAVADSPIRPSAVSVEVISPREVALDLPPVADDARWGYTVKWFLEDSPII
FDQVTTVSQSRLKLINLAPARSYVALVRRVGSLETSTARVEFSTPEAEGN
ATGVMTELSRLEIRVGRCVEISKHPDADSLYVEKVDFGDGEPRCVTIVSG
LVGYVSEEEMRDRLVVGLCNLPPRAMRGVTSVGMLLCASNEDHTRQAKTL
LTIFCYNRVDPLSPPEEATVGDLITFAGVLSAPSPPGSAAARAWSAAMEE
MKTRAPDGVASWEDLAMETSCGGACTSSVLGRVR*
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mRNA from alignment at F-serratus_M_contig1257:93442..95753-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1257.1913.1 ID=mRNA_F-serratus_M_contig1257.1913.1|Name=mRNA_F-serratus_M_contig1257.1913.1|organism=Fucus serratus male|type=mRNA|length=2312bp|location=Sequence derived from alignment at F-serratus_M_contig1257:93442..95753- (Fucus serratus male)
GCAAGGCTTCCCATGGCGGCAACTTGGCTTCGGCTGCTAGTGGCGTGGTA CACACTAGCCAGATCATCTGGTGAGAAGATCCGGCAGTTGTTGGTGAACA ATTGAGAAACCTGGAACAAGCGCGTATCCTGTAGTCGACGGTGCGTACAC GATGTCCCAGCTCCCAAGCGAACATCGTTTACAGTACCGTATGGCACTTA CACCGGATTTCCGACTCTCAGGCGATCTAGCTTACGTCGAACTAAAGGTT GATACCTGCGCCCTCAAGAAGTTGTGTAGCAGTGAACTGAATCGTGAAAT TCTCTTCCCCGGTACATTTCTATTGATATATGTACATATGTTTGACGGTG CTATAATGTACTCAATCTATGCATGCACAGACAGTATGTATGTAGGCTCG ATGTATAGTCATCATATAGCAGAGTATGGATCAACCGTTGCCAATCCTGC TCGTGGTCAGCTGAACATAGAAAAATCGTCATGCCGGGATCGATAACCTG AAGGGATGTTGTTCCCTTCGACGTACTGCCAACCGCTGCTCGACAGGTTT TGCTGCCATTCGCCGTCCTTTTCTATCCATCTCACCGTCATCGGCACGTG ATAGCAGGACTCATGGGGCTTCCACCATTCCTAGTTGCGCAGCTGTCGCT GACTCCCCCATAAGGCCTTCGGCTGTATCGGTGGAGGTGATATCGCCTCG AGAAGTCGCCCTAGATTTACCGCCTGTCGCCGACGATGCGCGATGGGGCT ACACGGTCAAGTGGTTCCTGGAAGATAGCCCCATCATCTTCGACCAGGTT TGCGCAAGCAGCAGAATTGTCCTTCGATCAAAAATACCCACGTCGTATAC CAACGAGGCGAAGGCGGAGGATCCTGACTTACTGTTGACCATCTCTGCTC GCGGCAGACTTCACGGTGACGACTCGCATCTCGCGTATCTTCATAGGTTA CGACAGTATCGCAGTCCAGGCTGAAGTTGATCAACCTCGCGCCGGCGAGG AGCTACGTGGCCCTGGTGCGGAGGGTGGGATCGTTGGAAACGAGCACCGC GCGGGTAGAGTTCTCCACCCCCGAGGTGAGACGGCGACCCTCCAGCAACC AACGAAATAAAGATCTTCAGGATGGTATGCGATTGGCCATTGATCTCGCT ATGGAGCAAAAATCCTCTCTTTTCCTTTTTTTGTTGTTGTTGTTGTTACT GCTTTCTTAACCTGACTATCGTAACCTCAGGCGGAGGGTAACGCCACGGG TGTAATGACGGAACTCTCGCGGCTCGAGATTCGAGTGGGTCGCTGCGTGG AGATCAGCAAGCACCCCGACGCCGACTCTCTGTACGTAGAGAAGGTGGAC TTTGGCGACGGAGAGCCAAGGTGTGTGTGGCCATGCTTTGGTCGGAACGG GACTACGGACTGATTCATGAGTTCGATGGAATTCGATCACCCTCAGGAAG CATTTAGGCGGGTGTGTGTATTTTAAACGCAGCGAGTTTTGACAACTTCT CTATCTGACTGGATGGCTGTTCATAAGATTAAGATTCGTTCAGAGTTTTG CTCATACAGAAACGCGTGCTGCGTCGGCATTGAAATGCACAGCGCCGAGT CATCCTAACCGAGTCATCAAAGCAGGCGATGATTTTTCTCTGATCAATCG CGCTGCCTGGATACAGAACGATCGTCTCGGGGCTCGTGGGCTACGTATCG GAAGAGGAGATGAGAGACAGGCTGGTGGTGGGGTTGTGCAACTTGCCCCC GAGAGCCATGCGCGGTGTAACATCTGTGGGGATGTTACTGTGCGCCAGCA ACGAGGATCACACGAGGCAAGCCAAGACTCTACTGACGATTTTTTGTTAC GTACGAGCGCGGAGAGAGTAAGCTTGAGATTTTTTTTCACGCCCGTTTGA TACCCCTCCACCGCCCTTTCCATTTTTAGGCGTGGAAAAATCTCTCGTCG ACCGTGACTCTTCCTTTTTTGTTTTATCTGCGATTTGGACCGTACAAAGT TATCGCGCTTTTTAGTCCTAAAAGACGATGAAAAATCTCCGCTATTGCTG CGATTTTCCGCACGGCGTGGCCGAGAACAGGGTCGACCCCCTATCGCCTC CCGAAGAAGCCACCGTCGGGGACCTCATTACCTTTGCGGGAGTACTGTCC GCGCCTTCCCCTCCAGGAAGCGCCGCGGCTCGAGCGTGGTCTGCCGCGAT GGAGGAAATGAAGACAAGAGCACCCGATGGCGTTGCCAGCTGGGAGGATC TCGCGATGGAGACGTCGTGCGGCGGCGCATGCACTTCCTCTGTATTGGGT CGCGTGCGATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1257:93442..95753-

>mRNA_F-serratus_M_contig1257.1913.1 ID=mRNA_F-serratus_M_contig1257.1913.1|Name=mRNA_F-serratus_M_contig1257.1913.1|organism=Fucus serratus male|type=CDS|length=2010bp|location=Sequence derived from alignment at F-serratus_M_contig1257:93442..95753- (Fucus serratus male)
ATGGCGGCAACTTGGCTTCGGCTGCTAGTGGCGTGGTACACACTAGCCAG
ATCATCTGATGGCGGCAACTTGGCTTCGGCTGCTAGTGGCGTGGTACACA
CTAGCCAGATCATCTGGTTTTGCTGCCATTCGCCGTCCTTTTCTATCCAT
CTCACCGTCATCGGCACGTGATAGCAGGACTCATGGGGCTTCCACCATTC
CTAGTTGCGCAGCTGTCGCTGACTCCCCCATAAGGCCTTCGGCTGTATCG
GTGGAGGTGATATCGCCTCGAGAAGTCGCCCTAGATTTACCGCCTGTCGC
CGACGATGCGCGATGGGGCTACACGGTCAAGTGGTTCCTGGAAGATAGCC
CCATCATCTTCGACCAGGTTTTGCTGCCATTCGCCGTCCTTTTCTATCCA
TCTCACCGTCATCGGCACGTGATAGCAGGACTCATGGGGCTTCCACCATT
CCTAGTTGCGCAGCTGTCGCTGACTCCCCCATAAGGCCTTCGGCTGTATC
GGTGGAGGTGATATCGCCTCGAGAAGTCGCCCTAGATTTACCGCCTGTCG
CCGACGATGCGCGATGGGGCTACACGGTCAAGTGGTTCCTGGAAGATAGC
CCCATCATCTTCGACCAGGTTACGACAGTATCGCAGTCCAGGCTGAAGTT
GATCAACCTCGCGCCGGCGAGGAGCTACGTGGCCCTGGTGCGGAGGGTGG
GATCGTTGGAAACGAGCACCGCGCGGGTAGAGTTCTCCACCCCCGAGGTT
ACGACAGTATCGCAGTCCAGGCTGAAGTTGATCAACCTCGCGCCGGCGAG
GAGCTACGTGGCCCTGGTGCGGAGGGTGGGATCGTTGGAAACGAGCACCG
CGCGGGTAGAGTTCTCCACCCCCGAGGCGGAGGGTAACGCCACGGGTGTA
ATGACGGAACTCTCGCGGCTCGAGATTCGAGTGGGTCGCTGCGTGGAGAT
CAGCAAGCACCCCGACGCCGACTCTCTGTACGTAGAGAAGGTGGACTTTG
GCGACGGAGAGCCAAGGTGTGTGCGGAGGGTAACGCCACGGGTGTAATGA
CGGAACTCTCGCGGCTCGAGATTCGAGTGGGTCGCTGCGTGGAGATCAGC
AAGCACCCCGACGCCGACTCTCTGTACGTAGAGAAGGTGGACTTTGGCGA
CGGAGAGCCAAGGTGTGTAACGATCGTCTCGGGGCTCGTGGGCTACGTAT
CGGAAGAGGAGATGAGAGACAGGCTGGTGGTGGGGTTGTGCAACTTGCCC
CCGAGAGCCATGCGCGGTGTAACATCTGTGGGGATGTTACTGTGCGCCAG
CAACGAGGATCACACGAGGCAAGCCAAGACTCTACTGACGATTTTTTGTT
ACAACGATCGTCTCGGGGCTCGTGGGCTACGTATCGGAAGAGGAGATGAG
AGACAGGCTGGTGGTGGGGTTGTGCAACTTGCCCCCGAGAGCCATGCGCG
GTGTAACATCTGTGGGGATGTTACTGTGCGCCAGCAACGAGGATCACACG
AGGCAAGCCAAGACTCTACTGACGATTTTTTGTTACAACAGGGTCGACCC
CCTATCGCCTCCCGAAGAAGCCACCGTCGGGGACCTCATTACCTTTGCGG
GAGTACTGTCCGCGCCTTCCCCTCCAGGAAGCGCCGCGGCTCGAGCGTGG
TCTGCCGCGATGGAGGAAATGAAGACAAGAGCACCCGATGGCGTTGCCAG
CTGGGAGGATCTCGCGATGGAGACGTCGTGCGGCGGCGCATGCACTTCCT
CTGTATTGGGTCGCGTGCGATGAAACAGGGTCGACCCCCTATCGCCTCCC
GAAGAAGCCACCGTCGGGGACCTCATTACCTTTGCGGGAGTACTGTCCGC
GCCTTCCCCTCCAGGAAGCGCCGCGGCTCGAGCGTGGTCTGCCGCGATGG
AGGAAATGAAGACAAGAGCACCCGATGGCGTTGCCAGCTGGGAGGATCTC
GCGATGGAGACGTCGTGCGGCGGCGCATGCACTTCCTCTGTATTGGGTCG
CGTGCGATGA
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