mRNA_F-serratus_M_contig7674.18930.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7674.18930.1
Unique NamemRNA_F-serratus_M_contig7674.18930.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A151R4G2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R4G2_CAJCA)

HSP 1 Score: 64.3 bits (155), Expect = 2.690e-10
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECSDI--VRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVT 237
            WISD GAS HMT +  +++N R+CS I  V    G  LPI G+GD +++  +      + L +V  VP L+ NLLS+ Q+T
Sbjct:   19 WISDTGASNHMTGTSSMLSNIRQCSSIDSVLIGDGSPLPIHGIGDSVIKQKN----ITLPLNNVLLVPNLTKNLLSVSQLT 95          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR)

HSP 1 Score: 58.9 bits (141), Expect = 5.550e-8
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
            WISD GAS HMT    +++N R+CS  D V    G  LPI G+GD  ++  +      + L  V  VP L+ NLLS
Sbjct:  340 WISDTGASNHMTGKTSMLSNIRQCSGTDFVLIGDGSPLPIHGIGDSFIKQKNTT----LPLHDVLLVPDLTKNLLS 411          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A420HHL7_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420HHL7_9PEZI)

HSP 1 Score: 58.2 bits (139), Expect = 9.510e-8
Identity = 26/86 (30.23%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYF 258
            ++ D  A+RH+     L+TN+++CS IV+      + + G+GD+ LRF ++   F +Q  +  ++PQL  N++S  Q+   + + F
Sbjct:  236 FVFDTAATRHIVCDKRLLTNFQDCSTIVKWGNAKSIQVSGMGDMFLRFKNNTMLFKLQ--NCMYMPQLGFNIISHPQIRGNYTSVF 319          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2Z6NS08_TRISU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NS08_TRISU)

HSP 1 Score: 57.0 bits (136), Expect = 2.720e-7
Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
            WISD GAS HMT    ++ N R+CS  D V    G  LPI G+GD  ++         + L  V  VP L+ NLLS
Sbjct:  339 WISDTGASNHMTGKTSMLHNIRQCSGTDSVLIGDGSPLPIHGIGDSFIK----QNNITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A023EK80_AEDAL (Putative copia all (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A023EK80_AEDAL)

HSP 1 Score: 55.5 bits (132), Expect = 5.210e-7
Identity = 31/99 (31.31%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYFGTKNGVELRFKSG 297
            W  D GAS HMTS  + + N +  ++ V  A G+ + + GVG   L+      +  +Q   V  +P LS NLLS+ Q+    +T   +  G ++   SG
Sbjct:   32 WFIDSGASVHMTSRREFLDNVKPSNETVVAANGNSMNVVGVGSTTLKPSCQENSIPVQ--EVQLIPDLSVNLLSVNQIVRKGYTVVFSDTGCKVVNGSG 128          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: UPI00084E4DF7 (uncharacterized protein LOC108724401 n=1 Tax=Trachymyrmex zeteki TaxID=64791 RepID=UPI00084E4DF7)

HSP 1 Score: 55.5 bits (132), Expect = 9.040e-7
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYFGTKNGVELRFKSG 297
            W  D GAS+HMTS  D ++  R  S  +IV TA    + + G G ++LR   +    D+ +  V +VP+L+ N+LS+ Q+    +T     +G  +  K+G
Sbjct:  249 WYIDSGASQHMTSHEDWLSELRSTSVKEIV-TANNQKMAVSGTGKVVLRVNDE----DVGVKDVLYVPELTTNILSVNQMVKNGNTVVFNADGCSIFNKNG 344          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A401G9K2_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G9K2_9APHY)

HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 1
Query:    4 ISDDGASRHMTSSHDLMTNYREC-SDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYFG 261
            I D GASRHMTS  D ++N+R      +R A  ++    GVGD+L+  P+  G   I+L  V   P +   L+SL  +  A   + G
Sbjct:  450 IFDTGASRHMTSHLDRLSNFRTTVPHRIRAANSEIFHSHGVGDLLMHLPAINGGRHIRLKGVLHAPAMHATLISLGLLDEARFAWLG 536          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A7J6VSL4_THATH (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VSL4_THATH)

HSP 1 Score: 54.7 bits (130), Expect = 1.630e-6
Identity = 25/86 (29.07%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYF 258
            ++ D  A+RH+     L+TN++ CS IV+      + + G+GD+ LRF ++   F ++  +  ++PQL  N++S  Q+   + + F
Sbjct:  103 FVFDTAATRHIVCDKRLLTNFQNCSTIVKWGNAKSIQVSGMGDMFLRFKNNDMLFKLE--NCMYMPQLGINIISHPQIRGNYTSVF 186          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2K3MQW2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQW2_TRIPR)

HSP 1 Score: 54.7 bits (130), Expect = 1.790e-6
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
            WISD GAS HMT +  +++N R+ S  D V    G  LPI G+GD  ++  +      + L  V  VP L+ NLLS
Sbjct:  339 WISDTGASNHMTGTASMLSNIRQSSGTDSVLIGDGSPLPIHGIGDSFIKQKN----ITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2Z6LMX1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LMX1_TRISU)

HSP 1 Score: 54.3 bits (129), Expect = 2.440e-6
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 1
Query:    1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
            WISD GAS HMT +  ++ N R+ S  D V    G  LPI G+GD  ++  +      + L  V  VP L+ NLLS
Sbjct:  339 WISDTGASNHMTGTASMLNNIRQSSGTDSVLIGDGSPLPIHGIGDSFIKQKN----ITLPLHDVLLVPDLTKNLLS 410          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A151R4G2_CAJCA2.690e-1041.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3L0D5_TRIPR5.550e-842.11Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A420HHL7_9PEZI9.510e-830.23Uncharacterized protein (Fragment) n=1 Tax=Erysiph... [more]
A0A2Z6NS08_TRISU2.720e-742.11Integrase catalytic domain-containing protein (Fra... [more]
A0A023EK80_AEDAL5.210e-731.31Putative copia all (Fragment) n=1 Tax=Aedes albopi... [more]
UPI00084E4DF79.040e-732.67uncharacterized protein LOC108724401 n=1 Tax=Trach... [more]
A0A401G9K2_9APHY1.300e-635.63Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A7J6VSL4_THATH1.630e-629.07Retrovirus-related pol polyprotein from transposon... [more]
A0A2K3MQW2_TRIPR1.790e-640.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z6LMX1_TRISU2.440e-640.79Uncharacterized protein n=1 Tax=Trifolium subterra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7674contigF-serratus_M_contig7674:14805..15104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932298.6729016-CDS-F-serratus_M_contig7674:14804..150741622932298.6729016-CDS-F-serratus_M_contig7674:14804..15074Fucus serratus maleCDSF-serratus_M_contig7674 14805..15074 -
1690964241.1932795-CDS-F-serratus_M_contig7674:14804..150741690964241.1932795-CDS-F-serratus_M_contig7674:14804..15074Fucus serratus maleCDSF-serratus_M_contig7674 14805..15074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932298.689243-UTR-F-serratus_M_contig7674:15074..151041622932298.689243-UTR-F-serratus_M_contig7674:15074..15104Fucus serratus maleUTRF-serratus_M_contig7674 15075..15104 -
1690964241.2020042-UTR-F-serratus_M_contig7674:15074..151041690964241.2020042-UTR-F-serratus_M_contig7674:15074..15104Fucus serratus maleUTRF-serratus_M_contig7674 15075..15104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7674.18930.1prot_F-serratus_M_contig7674.18930.1Fucus serratus malepolypeptideF-serratus_M_contig7674 14805..15074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7674.18930.1

>prot_F-serratus_M_contig7674.18930.1 ID=prot_F-serratus_M_contig7674.18930.1|Name=mRNA_F-serratus_M_contig7674.18930.1|organism=Fucus serratus male|type=polypeptide|length=90bp
MTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLL
SVAFVPQLSHNLLSLQQVTAAHHTYFGTKNGVELRFKSGR
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mRNA from alignment at F-serratus_M_contig7674:14805..15104-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7674.18930.1 ID=mRNA_F-serratus_M_contig7674.18930.1|Name=mRNA_F-serratus_M_contig7674.18930.1|organism=Fucus serratus male|type=mRNA|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig7674:14805..15104- (Fucus serratus male)
TGGATATCAGATGATGGCGCATCACGACACATGACCTCGTCACACGACTT GATGACCAACTACCGTGAGTGCAGTGACATTGTTAGGACCGCTGGCGGTG ATGTACTCCCGATTGAGGGTGTTGGGGACATTCTCCTTCGCTTTCCGTCT GACGCGGGAGCGTTTGACATTCAGCTGTTGAGCGTTGCGTTTGTACCACA ACTGAGTCACAACCTCTTGTCATTACAGCAGGTTACAGCCGCCCACCATA CATACTTCGGTACGAAAAATGGTGTGGAGTTACGGTTCAAGTCAGGTCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7674:14805..15104-

>mRNA_F-serratus_M_contig7674.18930.1 ID=mRNA_F-serratus_M_contig7674.18930.1|Name=mRNA_F-serratus_M_contig7674.18930.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig7674:14805..15104- (Fucus serratus male)
ATGACCTCGTCACACGACTTGATGACCAACTACCGTGAGTGCAGTGACAT
TGTTAGGACCGCTGGCGGTGATGTACTCCCGATTGAGGGTGTTGGGGACA
TTCTCCTTCGCTTTCCGTCTGACGCGGGAGCGTTTGACATTCAGCTGTTG
AGCGTTGCGTTTGTACCACAACTGAGTCACAACCTCTTGTCATTACAGCA
GGTTACAGCCGCCCACCATACATACTTCGGTACGAAAAATGGTGTGGAGT
TACGGTTCAAGTCAGGTCGAATGACCTCGTCACACGACTTGATGACCAAC
TACCGTGAGTGCAGTGACATTGTTAGGACCGCTGGCGGTGATGTACTCCC
GATTGAGGGTGTTGGGGACATTCTCCTTCGCTTTCCGTCTGACGCGGGAG
CGTTTGACATTCAGCTGTTGAGCGTTGCGTTTGTACCACAACTGAGTCAC
AACCTCTTGTCATTACAGCAGGTTACAGCCGCCCACCATACATACTTCGG
TACGAAAAATGGTGTGGAGTTACGGTTCAAGTCAGGTCGA
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