mRNA_F-serratus_M_contig7674.18930.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A151R4G2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R4G2_CAJCA) HSP 1 Score: 64.3 bits (155), Expect = 2.690e-10 Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECSDI--VRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVT 237
WISD GAS HMT + +++N R+CS I V G LPI G+GD +++ + + L +V VP L+ NLLS+ Q+T
Sbjct: 19 WISDTGASNHMTGTSSMLSNIRQCSSIDSVLIGDGSPLPIHGIGDSVIKQKN----ITLPLNNVLLVPNLTKNLLSVSQLT 95
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR) HSP 1 Score: 58.9 bits (141), Expect = 5.550e-8 Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
WISD GAS HMT +++N R+CS D V G LPI G+GD ++ + + L V VP L+ NLLS
Sbjct: 340 WISDTGASNHMTGKTSMLSNIRQCSGTDFVLIGDGSPLPIHGIGDSFIKQKNTT----LPLHDVLLVPDLTKNLLS 411
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A420HHL7_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420HHL7_9PEZI) HSP 1 Score: 58.2 bits (139), Expect = 9.510e-8 Identity = 26/86 (30.23%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYF 258
++ D A+RH+ L+TN+++CS IV+ + + G+GD+ LRF ++ F +Q + ++PQL N++S Q+ + + F
Sbjct: 236 FVFDTAATRHIVCDKRLLTNFQDCSTIVKWGNAKSIQVSGMGDMFLRFKNNTMLFKLQ--NCMYMPQLGFNIISHPQIRGNYTSVF 319
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2Z6NS08_TRISU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NS08_TRISU) HSP 1 Score: 57.0 bits (136), Expect = 2.720e-7 Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
WISD GAS HMT ++ N R+CS D V G LPI G+GD ++ + L V VP L+ NLLS
Sbjct: 339 WISDTGASNHMTGKTSMLHNIRQCSGTDSVLIGDGSPLPIHGIGDSFIK----QNNITLPLHDVLLVPDLTKNLLS 410
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A023EK80_AEDAL (Putative copia all (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A023EK80_AEDAL) HSP 1 Score: 55.5 bits (132), Expect = 5.210e-7 Identity = 31/99 (31.31%), Postives = 49/99 (49.49%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYFGTKNGVELRFKSG 297
W D GAS HMTS + + N + ++ V A G+ + + GVG L+ + +Q V +P LS NLLS+ Q+ +T + G ++ SG
Sbjct: 32 WFIDSGASVHMTSRREFLDNVKPSNETVVAANGNSMNVVGVGSTTLKPSCQENSIPVQ--EVQLIPDLSVNLLSVNQIVRKGYTVVFSDTGCKVVNGSG 128
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: UPI00084E4DF7 (uncharacterized protein LOC108724401 n=1 Tax=Trachymyrmex zeteki TaxID=64791 RepID=UPI00084E4DF7) HSP 1 Score: 55.5 bits (132), Expect = 9.040e-7 Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYFGTKNGVELRFKSG 297
W D GAS+HMTS D ++ R S +IV TA + + G G ++LR + D+ + V +VP+L+ N+LS+ Q+ +T +G + K+G
Sbjct: 249 WYIDSGASQHMTSHEDWLSELRSTSVKEIV-TANNQKMAVSGTGKVVLRVNDE----DVGVKDVLYVPELTTNILSVNQMVKNGNTVVFNADGCSIFNKNG 344
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A401G9K2_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G9K2_9APHY) HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6 Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 4 ISDDGASRHMTSSHDLMTNYREC-SDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYFG 261
I D GASRHMTS D ++N+R +R A ++ GVGD+L+ P+ G I+L V P + L+SL + A + G
Sbjct: 450 IFDTGASRHMTSHLDRLSNFRTTVPHRIRAANSEIFHSHGVGDLLMHLPAINGGRHIRLKGVLHAPAMHATLISLGLLDEARFAWLG 536
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A7J6VSL4_THATH (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VSL4_THATH) HSP 1 Score: 54.7 bits (130), Expect = 1.630e-6 Identity = 25/86 (29.07%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLSLQQVTAAHHTYF 258
++ D A+RH+ L+TN++ CS IV+ + + G+GD+ LRF ++ F ++ + ++PQL N++S Q+ + + F
Sbjct: 103 FVFDTAATRHIVCDKRLLTNFQNCSTIVKWGNAKSIQVSGMGDMFLRFKNNDMLFKLE--NCMYMPQLGINIISHPQIRGNYTSVF 186
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2K3MQW2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQW2_TRIPR) HSP 1 Score: 54.7 bits (130), Expect = 1.790e-6 Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
WISD GAS HMT + +++N R+ S D V G LPI G+GD ++ + + L V VP L+ NLLS
Sbjct: 339 WISDTGASNHMTGTASMLSNIRQSSGTDSVLIGDGSPLPIHGIGDSFIKQKN----ITLPLHDVLLVPDLTKNLLS 410
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Match: A0A2Z6LMX1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LMX1_TRISU) HSP 1 Score: 54.3 bits (129), Expect = 2.440e-6 Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 1
Query: 1 WISDDGASRHMTSSHDLMTNYRECS--DIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLSVAFVPQLSHNLLS 222
WISD GAS HMT + ++ N R+ S D V G LPI G+GD ++ + + L V VP L+ NLLS
Sbjct: 339 WISDTGASNHMTGTASMLNNIRQSSGTDSVLIGDGSPLPIHGIGDSFIKQKN----ITLPLHDVLLVPDLTKNLLS 410 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7674.18930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7674.18930.1 >prot_F-serratus_M_contig7674.18930.1 ID=prot_F-serratus_M_contig7674.18930.1|Name=mRNA_F-serratus_M_contig7674.18930.1|organism=Fucus serratus male|type=polypeptide|length=90bp MTSSHDLMTNYRECSDIVRTAGGDVLPIEGVGDILLRFPSDAGAFDIQLLback to top mRNA from alignment at F-serratus_M_contig7674:14805..15104- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7674.18930.1 ID=mRNA_F-serratus_M_contig7674.18930.1|Name=mRNA_F-serratus_M_contig7674.18930.1|organism=Fucus serratus male|type=mRNA|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig7674:14805..15104- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7674:14805..15104- >mRNA_F-serratus_M_contig7674.18930.1 ID=mRNA_F-serratus_M_contig7674.18930.1|Name=mRNA_F-serratus_M_contig7674.18930.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig7674:14805..15104- (Fucus serratus male)back to top |