mRNA_F-serratus_M_contig767.18929.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig767.18929.1
Unique NamemRNA_F-serratus_M_contig767.18929.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.100e-21
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   14 MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDEG 250
            +++  VP C  V  GV ++ N+G TL+TL+L SG+YRTS +S  + EC+REEAC+GGS AG YCA GY G YCAAC+EG
Sbjct:  362 LEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEG 440          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.390e-17
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   14 MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDEG 250
            +D  T+P C E PEG   T   G TL TL ++ GFYR+S  S ++ EC+ ++AC GGS  G YCAEGY GPYCA C  G
Sbjct:  564 VDAETLPTCEEAPEGSRTTRR-GATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAG 641          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-15
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2
Query:   14 MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDEG 250
            +D  T+P C   PEG   T   G TL TL ++ GFYR+S  S ++ EC+ ++AC GGS  G YC+EGY GPYCA C  G
Sbjct:  540 VDADTLPTCETAPEGSRTTRR-GATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAG 617          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.800e-9
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 2
Query:   23 TTVPVCNEV---PEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGR------YCAEGYAGPYCAACDEG 250
            T+  +C +V   PEG++  ++ G  LETL L  G++R++  S N+ EC+ ++ACIG  ++ R      YC  GY GPYCA C +G
Sbjct:  433 TSCMMCADVALNPEGLSC-DSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDG 516          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.840e-9
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 2
Query:   32 PVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIA-GRYCAEGYAGPYCAACDEG 250
            P C+   +  T++E +G++LETL++  G++R SN S  +  CY  EAC+GG       C  GY GPYCA C+ G
Sbjct:  674 PTCSVALDN-TVSEEAGVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGPYCAVCESG 746          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.960e-8
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 2
Query:   38 CNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDE 247
            C E+ EG+   +  G+TLETL L  G++RTSN S ++ EC    AC+GG+     C EG+ GPYC  C E
Sbjct:  181 CVEIVEGIR-NDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGGNST-NMCREGHTGPYCNVCVE 248          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A7R9U1A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.940e-7
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 2
Query:   35 VCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAG--PYCAACDEG 250
            VC    EG+T   + G  L TL L  G++R+   S ++ +C   +AC+GG+ A  YCAEG+    PYCA+C +G
Sbjct:   13 VCVFCGEGLTC-NSFGNVLPTLQLQRGYWRSGPMSGDIRDCISRDACVGGTDASNYCAEGHDPNTPYCASCLDG 85          
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A835YUM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.320e-6
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 2
Query:   80 GMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGR---YCAEGYAGPYCAAC 241
            G++ + L L  G +R +    NV +C+R EAC GGS       YCAEGY+GPYCA C
Sbjct:  759 GVSAKALPLRPGLWRENLTQANVRQCWRAEACHGGSATDSPDDYCAEGYSGPYCAVC 815          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FUB6_ECTSI3.100e-2156.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTT9_ECTSI1.390e-1751.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE1.090e-1549.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF7_ECTSI1.800e-940.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWT9_9PHAE1.840e-941.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2VWR0_9STRA2.960e-845.71Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7R9U1A3_9STRA6.940e-740.54Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835YUM0_9STRA3.320e-647.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig767contigF-serratus_M_contig767:73708..74259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog2880.D7FTT9
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size251
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig767.18929.1prot_F-serratus_M_contig767.18929.1Fucus serratus malepolypeptideF-serratus_M_contig767 73708..74246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932298.594049-CDS-F-serratus_M_contig767:73707..737301622932298.594049-CDS-F-serratus_M_contig767:73707..73730Fucus serratus maleCDSF-serratus_M_contig767 73708..73730 -
1690964241.1562226-CDS-F-serratus_M_contig767:73707..737301690964241.1562226-CDS-F-serratus_M_contig767:73707..73730Fucus serratus maleCDSF-serratus_M_contig767 73708..73730 -
1622932298.6117425-CDS-F-serratus_M_contig767:74032..742461622932298.6117425-CDS-F-serratus_M_contig767:74032..74246Fucus serratus maleCDSF-serratus_M_contig767 74033..74246 -
1690964241.1748357-CDS-F-serratus_M_contig767:74032..742461690964241.1748357-CDS-F-serratus_M_contig767:74032..74246Fucus serratus maleCDSF-serratus_M_contig767 74033..74246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932298.6267853-UTR-F-serratus_M_contig767:74246..742591622932298.6267853-UTR-F-serratus_M_contig767:74246..74259Fucus serratus maleUTRF-serratus_M_contig767 74247..74259 -
1690964241.1852915-UTR-F-serratus_M_contig767:74246..742591690964241.1852915-UTR-F-serratus_M_contig767:74246..74259Fucus serratus maleUTRF-serratus_M_contig767 74247..74259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig767.18929.1

>prot_F-serratus_M_contig767.18929.1 ID=prot_F-serratus_M_contig767.18929.1|Name=mRNA_F-serratus_M_contig767.18929.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYR
EEACIGGSIAGRYCAEGYAGPYCAACDEG
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mRNA from alignment at F-serratus_M_contig767:73708..74259-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig767.18929.1 ID=mRNA_F-serratus_M_contig767.18929.1|Name=mRNA_F-serratus_M_contig767.18929.1|organism=Fucus serratus male|type=mRNA|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig767:73708..74259- (Fucus serratus male)
TGCCGGCATCGACATGGACAACACCACTGTACCTGTTTGTAATGAGGTCC CGGAGGGAGTGACTATTACCGAAAATTCTGGAATGACCCTAGAAACACTT AACCTCATGTCCGGGTTCTACCGAACGTCTAATCAGAGCAGAAACGTCTC GGAGTGCTACCGAGAAGAAGCTTGCATCGGAGGTTCGATCGCCGGTCGCT ACTGCGCAGAAGGTTACGCAGGCCCATGTGAGGGGTTTTATGTGCCCAAT GCATGCCTGGCGGCCTTTAGATACGGAACATTAATAAAATGTTACGGTGC CTTCTCAAACGCCTAAAACTATTTGCTATAGTTTGGCTTGTTTGTAACCG ACGCACTCAATCGATAGCAGACTTGATATGTATATATTCGCATTTTATGC AGGGTTCGATTATTTTGCAGATTGGATGACCAAGCTCCACGCTTTTGTGC CCGTTCCTGTTGCTCATTGTCGATTGGCTTCATCGCTTTGCGCCTCCTCC GTCCCGCGTACGCGGTTTCATCACCAAAGATTGTGCTGCCTGTGATGAAG GA
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Coding sequence (CDS) from alignment at F-serratus_M_contig767:73708..74259-

>mRNA_F-serratus_M_contig767.18929.1 ID=mRNA_F-serratus_M_contig767.18929.1|Name=mRNA_F-serratus_M_contig767.18929.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig767:73708..74259- (Fucus serratus male)
ATGGACAACACCACTGTACCTGTTTGTAATGAGGTCCCGGAGGGAGTGAC
TATTACCGAAAATTCTGGAATGACCCTAGAAACACTTAACCTCATGTCCG
GGTTCTACCGAACGTCTAATCAGAGCAGAAACGTCTCGGAGTGCTACCGA
GAAGAAGCTTGCATCGGAGGTTCGATCGCCGGTCGCTACTGCGCAGAAGG
TTACGCAGGCCCATATGGACAACACCACTGTACCTGTTTGTAATGAGGTC
CCGGAGGGAGTGACTATTACCGAAAATTCTGGAATGACCCTAGAAACACT
TAACCTCATGTCCGGGTTCTACCGAACGTCTAATCAGAGCAGAAACGTCT
CGGAGTGCTACCGAGAAGAAGCTTGCATCGGAGGTTCGATCGCCGGTCGC
TACTGCGCAGAAGGTTACGCAGGCCCATATTGTGCTGCCTGTGATGAAGG
AATTGTGCTGCCTGTGATGAAGGA
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