mRNA_F-serratus_M_contig767.18929.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.100e-21 Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 2
Query: 14 MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDEG 250
+++ VP C V GV ++ N+G TL+TL+L SG+YRTS +S + EC+REEAC+GGS AG YCA GY G YCAAC+EG
Sbjct: 362 LEDNVVPHCKAVAVGVNVSGNAGTTLQTLDLESGYYRTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEG 440
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.390e-17 Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2
Query: 14 MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDEG 250
+D T+P C E PEG T G TL TL ++ GFYR+S S ++ EC+ ++AC GGS G YCAEGY GPYCA C G
Sbjct: 564 VDAETLPTCEEAPEGSRTTRR-GATLATLEILPGFYRSSETSTDIRECFHKQACEGGSAVGTYCAEGYIGPYCAVCSAG 641
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.090e-15 Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2
Query: 14 MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDEG 250
+D T+P C PEG T G TL TL ++ GFYR+S S ++ EC+ ++AC GGS G YC+EGY GPYCA C G
Sbjct: 540 VDADTLPTCETAPEGSRTTRR-GATLATLEVLPGFYRSSETSTDIRECFHKKACDGGSAIGTYCSEGYIGPYCAVCAAG 617
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.800e-9 Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 2
Query: 23 TTVPVCNEV---PEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGR------YCAEGYAGPYCAACDEG 250
T+ +C +V PEG++ ++ G LETL L G++R++ S N+ EC+ ++ACIG ++ R YC GY GPYCA C +G
Sbjct: 433 TSCMMCADVALNPEGLSC-DSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDG 516
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A6H5JWT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.840e-9 Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 2
Query: 32 PVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIA-GRYCAEGYAGPYCAACDEG 250
P C+ + T++E +G++LETL++ G++R SN S + CY EAC+GG C GY GPYCA C+ G
Sbjct: 674 PTCSVALDN-TVSEEAGVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGYQGPYCAVCESG 746
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A7S2VWR0_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWR0_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.960e-8 Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 2
Query: 38 CNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAGPYCAACDE 247
C E+ EG+ + G+TLETL L G++RTSN S ++ EC AC+GG+ C EG+ GPYC C E
Sbjct: 181 CVEIVEGIR-NDIEGLTLETLTLFPGWWRTSNTSDDIRECIIAGACLGGNST-NMCREGHTGPYCNVCVE 248
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A7R9U1A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1A3_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 6.940e-7 Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 35 VCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGRYCAEGYAG--PYCAACDEG 250
VC EG+T + G L TL L G++R+ S ++ +C +AC+GG+ A YCAEG+ PYCA+C +G
Sbjct: 13 VCVFCGEGLTC-NSFGNVLPTLQLQRGYWRSGPMSGDIRDCISRDACVGGTDASNYCAEGHDPNTPYCASCLDG 85
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Match: A0A835YUM0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM0_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 3.320e-6 Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 2
Query: 80 GMTLETLNLMSGFYRTSNQSRNVSECYREEACIGGSIAGR---YCAEGYAGPYCAAC 241
G++ + L L G +R + NV +C+R EAC GGS YCAEGY+GPYCA C
Sbjct: 759 GVSAKALPLRPGLWRENLTQANVRQCWRAEACHGGSATDSPDDYCAEGYSGPYCAVC 815 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig767.18929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig767.18929.1 >prot_F-serratus_M_contig767.18929.1 ID=prot_F-serratus_M_contig767.18929.1|Name=mRNA_F-serratus_M_contig767.18929.1|organism=Fucus serratus male|type=polypeptide|length=79bp MDNTTVPVCNEVPEGVTITENSGMTLETLNLMSGFYRTSNQSRNVSECYRback to top mRNA from alignment at F-serratus_M_contig767:73708..74259- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig767.18929.1 ID=mRNA_F-serratus_M_contig767.18929.1|Name=mRNA_F-serratus_M_contig767.18929.1|organism=Fucus serratus male|type=mRNA|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig767:73708..74259- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig767:73708..74259- >mRNA_F-serratus_M_contig767.18929.1 ID=mRNA_F-serratus_M_contig767.18929.1|Name=mRNA_F-serratus_M_contig767.18929.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig767:73708..74259- (Fucus serratus male)back to top |