mRNA_F-serratus_M_contig75.18777.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18777.1
Unique NamemRNA_F-serratus_M_contig75.18777.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.320e-31
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  413 SGSRFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLIKWCV 721
            +  R IP   ELLERF+LV ++YG L++ KTKQPL R EAL+A++RLRVHI   C SDSP  +LYFE GKD  T   L+RC RG NDLEG+H HMR L+ WC+
Sbjct:  203 AAGRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCI 305          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.240e-30
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLIKWCV 721
            R IP   ELLERF+LV ++YG L++ KTKQPL R EAL+A++RLRVHI   C SDSP  +LYFE GKD  T   L+RC RG NDLEG+H HMR L+ WC+
Sbjct:  779 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCI 878          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.680e-30
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLIKWCV 721
            R IP   ELL+RF++V ++YG LL+ KTKQPL R EAL+A++RLRVHI   C SD+P  +LYFE GKD  T   L+RC RG NDLEGFH HMR L+ WC+
Sbjct:  381 RLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCI 480          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 3.010e-19
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLI 709
            R IP  +ELL+R++ V + +  +L+SKT +PL R      V  LR HI+ GC+SD P I LYF +G+    G+ +YRCARG N  EG+H+HMR L+
Sbjct:  510 RLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTS-QGLPIYRCARGTNSNEGYHRHMRKLL 604          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 8.940e-18
Identity = 41/96 (42.71%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLI 709
            R +PP  ELL+RF+ VV  +G+ +++ +K+ LLR +++ AV  LR HI  GC+SD   +++Y+  GK    G+  YRC RG ND+EG+H+++R+L+
Sbjct:  620 RLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTT-DGLVNYRCVRGTNDVEGYHRYLRTLL 714          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A0C9T7S3_PAXIN (Uncharacterized protein n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9T7S3_PAXIN)

HSP 1 Score: 91.7 bits (226), Expect = 1.860e-17
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLIKW 715
            R++PP++ LL R   V+  +G L +S T QPL   +A DA + +  HI+ G  SD P +SLYFE GKD+  G+TLYRC RG NDLEG   H   + +W
Sbjct: 1247 RYVPPAEILLSRVAAVIQTFGPLKDSTTGQPLFNEKAWDAAKNILEHIRGGYYSDPPGVSLYFEVGKDK-HGLTLYRCCRGTNDLEG-GVHQNLIRRW 1342          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.020e-17
Identity = 41/99 (41.41%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  413 SGSRFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLI 709
            S  R +P  D LL+RF+ V+  +G  +++ + + LLR +A+ AV +LR HI+  C+SD   +++YF  GK++  G+T YRC RG ND+EG+H+++R+L+
Sbjct:  573 SSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNK-HGLTDYRCVRGTNDVEGYHRYLRTLL 670          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-16
Identity = 42/96 (43.75%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLI 709
            R +P    LLERFNLV+  +  ++++K+ + LLR  A  AVE LR HI++GC+SD   + LY+  GK+   G+T  RC RG N  EG+H+++R L+
Sbjct:  256 RLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNS-AGITTRRCVRGTNCTEGYHRYVRRLL 350          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 8.630e-16
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLI 709
            R +P  + LL RF+ V+S    + ++KT Q LL   A+ AV  LR HI+ GC SD   + LYFE+GK   TG+T +RC RG N  EG+H+++++L+
Sbjct:  330 RRVPAPEVLLARFDAVISACKDIRDAKTGQVLLSPAAMKAVGLLREHIRLGCFSDPVGVPLYFERGKTS-TGLTRFRCVRGTNSTEGYHRYLKTLL 424          
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.790e-15
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  422 RFIPPSDELLERFNLVVSVYGHLLESKTKQPLLRREALDAVERLRVHIKTGCISDSPAISLYFEKGKDQLTGVTLYRCARGINDLEGFHKHMRSLI 709
            R +P    LLERFNLV+  +  ++++K+ + LLR  A  AVE LR HI++GC+SD   + LY+ K      G+T  RC RG N  EG+H+++R L+
Sbjct:  256 RLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTKS----AGITTRRCVRGTNCTEGYHRYLRRLL 347          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JD89_9PHAE2.320e-3159.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE1.240e-3061.003'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE3.680e-3060.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG3.010e-1946.883'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI8.940e-1842.713'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0C9T7S3_PAXIN1.860e-1746.94Uncharacterized protein n=1 Tax=Paxillus involutus... [more]
A0A6H5JRJ6_9PHAE8.020e-1741.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JPK9_9PHAE2.100e-1643.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K811_9PHAE8.630e-1643.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE3.790e-1542.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:885575..886902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size726
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18777.1prot_F-serratus_M_contig75.18777.1Fucus serratus malepolypeptideF-serratus_M_contig75 885848..886902 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932257.9576702-UTR-F-serratus_M_contig75:885574..8858471622932257.9576702-UTR-F-serratus_M_contig75:885574..885847Fucus serratus maleUTRF-serratus_M_contig75 885575..885847 -
1690964222.0187407-UTR-F-serratus_M_contig75:885574..8858471690964222.0187407-UTR-F-serratus_M_contig75:885574..885847Fucus serratus maleUTRF-serratus_M_contig75 885575..885847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932257.9774225-CDS-F-serratus_M_contig75:885847..8858771622932257.9774225-CDS-F-serratus_M_contig75:885847..885877Fucus serratus maleCDSF-serratus_M_contig75 885848..885877 -
1690964222.0299032-CDS-F-serratus_M_contig75:885847..8858771690964222.0299032-CDS-F-serratus_M_contig75:885847..885877Fucus serratus maleCDSF-serratus_M_contig75 885848..885877 -
1622932258.0008647-CDS-F-serratus_M_contig75:886479..8869021622932258.0008647-CDS-F-serratus_M_contig75:886479..886902Fucus serratus maleCDSF-serratus_M_contig75 886480..886902 -
1690964222.0401433-CDS-F-serratus_M_contig75:886479..8869021690964222.0401433-CDS-F-serratus_M_contig75:886479..886902Fucus serratus maleCDSF-serratus_M_contig75 886480..886902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18777.1

>prot_F-serratus_M_contig75.18777.1 ID=prot_F-serratus_M_contig75.18777.1|Name=mRNA_F-serratus_M_contig75.18777.1|organism=Fucus serratus male|type=polypeptide|length=151bp
GAPGGGTEQDGGQTSAGGSSSGAACTTSGSSDPLFTTPSEGFFSVRLAGM
EKLSFAVAGERKDEEEDGGEYGEPTAVLGSPGGGGVGYDAVADGDDNSDV
EVMEMIDIEEEADGNDANAAPEKGKGKYRSRKKEDDGFWLKVHSAQRRAA
*
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mRNA from alignment at F-serratus_M_contig75:885575..886902-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18777.1 ID=mRNA_F-serratus_M_contig75.18777.1|Name=mRNA_F-serratus_M_contig75.18777.1|organism=Fucus serratus male|type=mRNA|length=1328bp|location=Sequence derived from alignment at F-serratus_M_contig75:885575..886902- (Fucus serratus male)
GGCGCGCCTGGGGGTGGCACGGAGCAGGACGGGGGGCAGACAAGCGCGGG AGGCAGTTCGTCCGGGGCCGCCTGCACAACGTCTGGCAGCAGTGACCCAC TGTTTACTACGCCTTCGGAAGGCTTTTTCAGCGTGCGCCTAGCTGGCATG GAAAAGCTCAGCTTTGCAGTAGCTGGAGAAAGGAAGGACGAAGAAGAGGA TGGTGGAGAGTATGGAGAACCAACTGCAGTTTTGGGCTCCCCCGGCGGAG GAGGGGTGGGCTATGATGCTGTGGCCGACGGCGATGACAATAGTGACGTC GAGGTCATGGAGATGATTGATATCGAAGAGGAGGCCGATGGGAATGATGC CAACGCTGCTCCTGAAAAGGGAAAAGGAAAGTATCGTTCGAGGAAGAAGG AAGACGACGGCTTCTGGCTCAAGGTGAGTGTTGTACTGTGCTTCCCGCCG CAGAGGTGTTGTTATGTGCGTTTGCGTTGCACATGTTGTCTCCAGCGAGA TGTCCCTCGTCACTTCCATCGCAAGAATCTTATTCCTTTTCTTGTCTTGC CCTATCCCTAAGTACAGGAGCTCGGCCTTTTGATAAAGCTCGACCCCTTT CATGCGATGCAGCAATTGAGCAAGTTCGTCCTCAAGAGTCATGGAGCGTG TCGTGCTTTCCTAACGCGCTTGCGTGACGCTTTCTTCAAAGTTTACCGAT CTGATCTCGAGGAAGTCGAGACGGCGCTCCGTCAGCAGGGAAAGTCTGAT GCTGAAATCGAAACGATGAAGGAACAGAACTGGGGCTATTTCCCGAGTCT GTGCCGGCGGTGGGGTGGCAATCTTCTCTTGGTCTTCTGAAGTTGCGTTT TGAGTGCACAAACTACGTTCTCGCGGAAGTGAAATGCAGTGCAGCTCAAA TACGCTCTTTGTTCATGCCTACAGTCGGGATCTGTTTGACAGCGCTCGCC GACGTTAACACGTGGTATCTCGACTACACCCCCTCTCCACCCTCGCCCCA TTACTACACCCACCACACAACACAGGTTCATTCCGCCCAGCGACGAGCTG CTTGAACGCTTCAACCTCGTCGTAAGTGTATATGGTCACCTGCTGGAGAG CAAGACCAAGCAGCCCCTCCTTCGACGGGAGGCGTTGGACGCTGTTGAGC GACTGCGGGTCCACATCAAAACAGGATGCATCAGCGACAGCCCTGCAATT TCACTCTACTTCGAGAAAGGCAAGGATCAGCTGACGGGTGTAACGCTCTA CCGATGTGCGCGCGGCATCAACGATCTCGAGGGCTTTCACAAGCACATGC GTAGCCTGATCAAGTGGTGCGTCGGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig75:885575..886902-

>mRNA_F-serratus_M_contig75.18777.1 ID=mRNA_F-serratus_M_contig75.18777.1|Name=mRNA_F-serratus_M_contig75.18777.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig75:885575..886902- (Fucus serratus male)
GGCGCGCCTGGGGGTGGCACGGAGCAGGACGGGGGGCAGACAAGCGCGGG
AGGCAGTTCGTCCGGGGCCGCCTGCACAACGTCTGGCAGCAGTGACCCAC
TGTTTACTACGCCTTCGGAAGGCTTTTTCAGCGTGCGCCTAGCTGGCATG
GAAAAGCTCAGCTTTGCAGTAGCTGGAGAAAGGAAGGACGAAGAAGAGGA
TGGTGGAGAGTATGGAGAACCAACTGCAGTTTTGGGCTCCCCCGGCGGAG
GAGGGGTGGGCTATGATGCTGTGGCCGACGGCGATGACAATAGTGACGTC
GAGGTCATGGAGATGATTGATATCGAAGAGGAGGCCGATGGGAATGATGC
CAACGCTGCTCCTGAAAAGGGAAAAGGAAAGTATCGTTCGAGGAAGAAGG
AAGACGACGGCTTCTGGCTCAAGGGCGCGCCTGGGGGTGGCACGGAGCAG
GACGGGGGGCAGACAAGCGCGGGAGGCAGTTCGTCCGGGGCCGCCTGCAC
AACGTCTGGCAGCAGTGACCCACTGTTTACTACGCCTTCGGAAGGCTTTT
TCAGCGTGCGCCTAGCTGGCATGGAAAAGCTCAGCTTTGCAGTAGCTGGA
GAAAGGAAGGACGAAGAAGAGGATGGTGGAGAGTATGGAGAACCAACTGC
AGTTTTGGGCTCCCCCGGCGGAGGAGGGGTGGGCTATGATGCTGTGGCCG
ACGGCGATGACAATAGTGACGTCGAGGTCATGGAGATGATTGATATCGAA
GAGGAGGCCGATGGGAATGATGCCAACGCTGCTCCTGAAAAGGGAAAAGG
AAAGTATCGTTCGAGGAAGAAGGAAGACGACGGCTTCTGGCTCAAGGTTC
ATTCCGCCCAGCGACGAGCTGCTTGAGTTCATTCCGCCCAGCGACGAGCT
GCTTGA
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