mRNA_F-serratus_M_contig720.18449.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig720.18449.1
Unique NamemRNA_F-serratus_M_contig720.18449.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G2X5Y1_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X5Y1_CAPBA)

HSP 1 Score: 75.1 bits (183), Expect = 6.770e-12
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  286 NRENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            N E+G N  P  KF+GKCFNCGK GH++ DC+  KK +K   A      K+              G    W  DSGAT H+  ++     Y  A    +I +A+  T  V+G GK+ +++     + K++ +++V YVP L RNL+S
Sbjct:   17 NVEHGSNH-PKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDNLCAMFTECNMVGNPRAWWMDSGATLHVCASKELFSTYAPAQAEETIYMANSTTAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 158          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: UPI001F43F645 (hypothetical protein n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F43F645)

HSP 1 Score: 73.9 bits (180), Expect = 1.240e-11
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  289 RENGKNRRPSNK-FEGKCFNCGKRGHRAVDCKGTKKN-EKPGAAAEKKE---------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 693
            R +GK + P+ K F+G C+NCGK GH+A DC+  KK+ EK    A   E               G   EW  DSGAT H+   +     Y  A P   + + +  T  V+G+GK+ +++     + K++ +++V +VP + +NLVS    V+
Sbjct:  246 RHSGKEKNPNKKKFKGNCYNCGKAGHKAPDCRAPKKDKEKNKGQANMVEDVDDLCAMLSECNMVGNPKEWWLDSGATRHVCAVKEAFTTYTPAGPNEELYMGNTATAKVEGYGKVLLKMT----SGKVLTLNNVMHVPSIRKNLVSAALLVK 393          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G2V5Q5_CAPBA (Geraniol 8-hydroxylase n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V5Q5_CAPBA)

HSP 1 Score: 73.2 bits (178), Expect = 2.970e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  286 NRENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            N E+G N  P  KF+GKCFNCGK GH++ DC+  KK +K   A      K+              G    W  DSGAT H+  ++     Y  A    +I +A+  T  V+G GK+ +++     + K++ +++V YVP L RNL+S
Sbjct:  693 NVEHGSNH-PKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 834          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G2VDA6_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VDA6_CAPBA)

HSP 1 Score: 73.2 bits (178), Expect = 3.080e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  286 NRENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            N E+G N  P  KF+GKCFNCGK GH++ DC+  KK +K   A      K+              G    W  DSGAT H+  ++     Y  A    +I +A+  T  V+G GK+ +++     + K++ +++V YVP L RNL+S
Sbjct:  252 NVEHGSNH-PKKKFKGKCFNCGKIGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATHHVCESKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 393          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G2W247_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W247_CAPBA)

HSP 1 Score: 73.2 bits (178), Expect = 3.190e-11
Identity = 51/147 (34.69%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  286 NRENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            N E+G N  P  KF+GKCFNCGK GH++ DC+  KK +K   A      K+              G    W  DSGAT H+  ++     Y  A    +I +A+  T  V+G GK+ +++     + K++ +++V YVP L RNL+S
Sbjct:  728 NVEHGSNH-PKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRHVCASKELFSTYAPAQAEETIYMANSATAKVEGIGKVCLKMT----SGKVLTLNNVLYVPELRRNLIS 869          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G3BPT2_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BPT2_CAPCH)

HSP 1 Score: 69.7 bits (169), Expect = 4.380e-10
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  292 ENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            E G N+ P  KF+GKCFNCGK GH+++DC+  KK +K   A      KE              G   EW  DSG T H+   +    ++  A     I +A+  T  V+G GK+ +++     + K++ +++V Y+P L RNL+S
Sbjct:  392 EQGSNQ-PKKKFKGKCFNCGKIGHKSMDCRAPKKGKKKYQANMFESNKEYDDLCAMFSEYNLVGDPREWWMDSGVTRHVCANKELFSSFAPAQVEEMIYMANSVTAKVEGTGKVCLKMT----SGKVLTLNNVLYIPELRRNLIS 531          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A0J8B0L4_BETVV (CCHC-type domain-containing protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B0L4_BETVV)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-9
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  310 RPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAAAEKKEGGGGEWES---------DSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKA 687
            +P  +  G+CFNCGKRGH A DC+  KK E+  +  E     G + E          DSGA+ HM+  +  + N+ +      I  ADG T+   G G ++V     GR  K V + DV YVP L  NL+S   A
Sbjct:   57 KPKRQPRGRCFNCGKRGHFAKDCRSPKKKEESSSTDELAFVAGDQEELYAVAESCYVDSGASRHMTGNKGLLSNFVELLDAVKIVTADGRTICGIGTGDMKV-----GRG-KTVTLKDVLYVPDLKMNLLSVSAA 185          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G2V8S1_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V8S1_CAPBA)

HSP 1 Score: 66.6 bits (161), Expect = 4.860e-9
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  286 NRENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            N E+G N+ P  KF+GKCFNCGK GH++ DC+  KK +K   A      K+              G    W  DSGAT ++  ++     Y  A    +I +A+  T  V+  GK+ +++     + K++ +++  YVP L RNL+S
Sbjct:   19 NVEHGSNQ-PKKKFKGKCFNCGKVGHKSTDCRAPKKGKKKDQANLIESNKDYDDLCAMFTECNMVGNPRAWWMDSGATRYVCASKEFFSTYAPAQAEETIYMANSATAKVEEIGKVCLKMT----SRKVLTLNNELYVPELRRNLIS 160          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A2G2YZ05_CAPAN (Uncharacterized protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2YZ05_CAPAN)

HSP 1 Score: 65.9 bits (159), Expect = 8.870e-9
Identity = 49/145 (33.79%), Postives = 72/145 (49.66%), Query Frame = 1
Query:  292 ENGKNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAA---AEKKE--------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            E+G N+ P  KF+GKCFNCGK GH++ DC+  KK  K   A      KE              G   EW  DSGAT H+   +    ++  A       + +  T  V+  GKI +++     + K++ +++V YVP L RNL+S
Sbjct:  115 EHGSNQ-PKKKFKGKCFNCGKIGHKSTDCQAPKKGNKKDQANMIESNKEYDDLCAMFTECNLVGNPREWWMDSGATRHVCANKELFSSFAPAQAEEMFYMTNSATDKVEETGKICLKMT----SGKVLTLNNVLYVPELRRNLIS 254          
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Match: A0A0J7K988_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K988_LASNI)

HSP 1 Score: 65.9 bits (159), Expect = 9.200e-9
Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  334 KCFNCGKRGHRAVDCKGTKKNEKPG-----AAAEKKE-------------GGGGEWESDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQPGRTTKMVRMDDVAYVPGLSRNLVS 675
            KCFNCGKRGH A +C+  KK++K        +  KKE               G +W +DSGA+ HM+  R    ++ +    T++ +AD +TL V G G I V     G+    V++ DV YVP L R+L S
Sbjct:  233 KCFNCGKRGHFARECRMPKKDDKSNKDERSTSKSKKEDSEETCNVEVNTISSGVDWIADSGASVHMTSQREIFTSFVEEK--TALSLADSSTLMVRGRGNIRVTSYVKGKVVD-VKLQDVYYVPELRRSLFS 361          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig720.18449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G2X5Y1_CAPBA6.770e-1234.69Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
UPI001F43F6451.240e-1132.24hypothetical protein n=1 Tax=Corynebacterium parak... [more]
A0A2G2V5Q5_CAPBA2.970e-1134.69Geraniol 8-hydroxylase n=1 Tax=Capsicum baccatum T... [more]
A0A2G2VDA6_CAPBA3.080e-1134.69Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2W247_CAPBA3.190e-1134.69Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G3BPT2_CAPCH4.380e-1033.79Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
A0A0J8B0L4_BETVV1.200e-936.30CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A2G2V8S1_CAPBA4.860e-932.65Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2G2YZ05_CAPAN8.870e-933.79Uncharacterized protein n=1 Tax=Capsicum annuum Ta... [more]
A0A0J7K988_LASNI9.200e-936.36Integrase core domain protein n=1 Tax=Lasius niger... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig720contigF-serratus_M_contig720:298566..299465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue9.1e-18
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size696
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932207.3592372-CDS-F-serratus_M_contig720:298565..2988191622932207.3592372-CDS-F-serratus_M_contig720:298565..298819Fucus serratus maleCDSF-serratus_M_contig720 298566..298819 -
1690964198.6856592-CDS-F-serratus_M_contig720:298565..2988191690964198.6856592-CDS-F-serratus_M_contig720:298565..298819Fucus serratus maleCDSF-serratus_M_contig720 298566..298819 -
1622932207.3785825-CDS-F-serratus_M_contig720:299023..2994651622932207.3785825-CDS-F-serratus_M_contig720:299023..299465Fucus serratus maleCDSF-serratus_M_contig720 299024..299465 -
1690964198.7005086-CDS-F-serratus_M_contig720:299023..2994651690964198.7005086-CDS-F-serratus_M_contig720:299023..299465Fucus serratus maleCDSF-serratus_M_contig720 299024..299465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig720.18449.1prot_F-serratus_M_contig720.18449.1Fucus serratus malepolypeptideF-serratus_M_contig720 298566..299465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig720.18449.1

>prot_F-serratus_M_contig720.18449.1 ID=prot_F-serratus_M_contig720.18449.1|Name=mRNA_F-serratus_M_contig720.18449.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMEC
RMLENNPDGLNRGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENG
KNRRPSNKFEGKCFNCGKRGHRAVDCKGTKKNEKPGAAAEKKEGGGGEWE
SDSGATFHMSLTRAGMFNYKKASPGTSIEIADGNTLPVDGFGKIEVELDQ
PGRTTKMVRMDDVAYVPGLSRNLVSTVKAVEQ
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mRNA from alignment at F-serratus_M_contig720:298566..299465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig720.18449.1 ID=mRNA_F-serratus_M_contig720.18449.1|Name=mRNA_F-serratus_M_contig720.18449.1|organism=Fucus serratus male|type=mRNA|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig720:298566..299465- (Fucus serratus male)
ATGGAGCCAGGTAGTGATCCATTCAAATTCATGATGGAAGTCGACAAGCT GGCAGGAGACTTGCACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGA GATGCGTGATTATTGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGC CGTATGCTAGAGAACAACCCCGATGGTCTTAACAGGGGTGAGATTGAACG TGTTGTAGGAAACCAGTACAACAGACTTCTCAGACAGCAACAGGACTCGA AGGCATTGTCAGCGTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGG AAGAATAGGAGACCCAGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGG AAAGAGAGGGCACCGCGCTGTGGATTGTAAGGGCACGAAGAAGAACGAGA AACCCGGAGCTGCCGCCGAGAAAAAGGAGGGCGGCGGCGGCGGTAGGTGC TACGTCTGTGGTAGTGTGGAGCACCTTGCGCACAAGCATTGTAGGCTGTG CAGGAGCCTAGAGCACCGGACGCGAGACTGTGAGGAGCGCGGAGCTGAAA AAGGCGCAATGCTGGCAAAACTGACTGTGCCGGCAGTTCCTGAGGTGAGG GCAGCGGCGGCAATGGTGGGGACCGCCCGCAGTGATGAAAAGGAAGAATG GGAGTCAGATTCCGGCGCCACGTTTCACATGTCTCTCACGCGCGCCGGAA TGTTTAACTATAAGAAGGCTTCACCAGGGACGAGCATTGAGATTGCCGAC GGTAATACCCTACCGGTGGACGGCTTCGGGAAAATTGAAGTGGAATTGGA CCAGCCTGGACGTACTACCAAGATGGTAAGAATGGACGATGTCGCGTACG TGCCTGGACTCTCCCGAAACCTGGTGTCTACCGTTAAGGCTGTGGAGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig720:298566..299465-

>mRNA_F-serratus_M_contig720.18449.1 ID=mRNA_F-serratus_M_contig720.18449.1|Name=mRNA_F-serratus_M_contig720.18449.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig720:298566..299465- (Fucus serratus male)
ATGGAGCCAGGTAGTGATCCATTCAAATTCATGATGGAAGTCGACAAGCT
GGCAGGAGACTTGCACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGA
GATGCGTGATTATTGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGC
CGTATGCTAGAGAACAACCCCGATGGTCTTAACAGGGGTGAGATTGAACG
TGTTGTAGGAAACCAGTACAACAGACTTCTCAGACAGCAACAGGACTCGA
AGGCATTGTCAGCGTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGG
AAGAATAGGAGACCCAGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGG
AAAGAGAGGGCACCGCGCTGTGGATTGTAAGGGCACGAAGAAGAACGAGA
AACCCGGAGCTGCCGCCGAGAAAAAGGAGGGCGGCGGCGGCGATGGAGCC
AGGTAGTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAG
ACTTGCACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGAGATGCGTG
ATTATTGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGTATGCT
AGAGAACAACCCCGATGGTCTTAACAGGGGTGAGATTGAACGTGTTGTAG
GAAACCAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTG
TCAGCGTCGAGGGGCACCATCACGGCAAACCGAGAAAACGGGAAGAATAG
GAGACCCAGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGGAAAGAGAG
GGCACCGCGCTGTGGATTGTAAGGGCACGAAGAAGAACGAGAAACCCGGA
GCTGCCGCCGAGAAAAAGGAGGGCGGCGGCGGCGAATGGGAGTCAGATTC
CGGCGCCACGTTTCACATGTCTCTCACGCGCGCCGGAATGTTTAACTATA
AGAAGGCTTCACCAGGGACGAGCATTGAGATTGCCGACGGTAATACCCTA
CCGGTGGACGGCTTCGGGAAAATTGAAGTGGAATTGGACCAGCCTGGACG
TACTACCAAGATGGTAAGAATGGACGATGTCGCGTACGTGCCTGGACTCT
CCCGAAACCTGGTGTCTACCGTTAAGGCTGTGGAGCAAAATGGGAGTCAG
ATTCCGGCGCCACGTTTCACATGTCTCTCACGCGCGCCGGAATGTTTAAC
TATAAGAAGGCTTCACCAGGGACGAGCATTGAGATTGCCGACGGTAATAC
CCTACCGGTGGACGGCTTCGGGAAAATTGAAGTGGAATTGGACCAGCCTG
GACGTACTACCAAGATGGTAAGAATGGACGATGTCGCGTACGTGCCTGGA
CTCTCCCGAAACCTGGTGTCTACCGTTAAGGCTGTGGAGCAA
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