mRNA_F-serratus_M_contig72.18409.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.450e-54 Identity = 83/111 (74.77%), Postives = 93/111 (83.78%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
+GGDCDELRIQSTG TD+HEVR HGGS+YFE+TIVTSWD K+PQ Y GRSF+NCVSE + C G AQN+ GECRMDIINSE+GYLGY+DSESYGLTWKVRGFC D
Sbjct: 149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 181 bits (459), Expect = 6.030e-54 Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWD K PQ Y+ GRSF+NCVSE + C+G A+ND GECRMDIINSEMGY+G++D+ESYGLTWKVRGFC D
Sbjct: 41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 179 bits (454), Expect = 2.510e-53 Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWK--------VRGFCID 333
GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD K PQ Y+ GRSF+NCVSE + DCEG A+N+ GECRMDIINSE+ YLGY+DSESYG+TWK VRGFC D
Sbjct: 62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 187 bits (475), Expect = 4.430e-53 Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD K PQ Y++GRSF+NCVSE + DCEG A+N+ GECRMDIINSE+ YLGY+DSESYG+TWKVRGFC D
Sbjct: 513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.650e-51 Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVR---------GFCID 333
GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWD K PQ Y+ GRSF+NCVSE + C+GMA+ND GECRMDIINSEMGY+G++DSESYGLTWKVR GFC D
Sbjct: 86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI) HSP 1 Score: 155 bits (392), Expect = 5.300e-47 Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
+GG+C ELRI+ST +D+ E+RGHGG+LYFE+TIVTSWD D + PQ Y GRSFI CVSE + D A N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC D
Sbjct: 3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDT--CAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 158 bits (399), Expect = 2.800e-44 Identity = 73/111 (65.77%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVDCEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
+GG+C ELRI+ST +D+ E+RGHGG+LYFE+TIVTSWD D + PQ Y DGRSFI CVSE + D A N+ GECRMDII+SEMGYLGY SE+YG+TWKVRGFC D
Sbjct: 74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDT--CAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 143 bits (360), Expect = 2.250e-37 Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSE-YASTVD-CEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
GGD LRIQSTGS DY+E+RGHGGSL F +T VTSWD D K TNY RSFI CVSE A D C+G A N GECRMDII SEMG +GY +ESYG++WKVRG+C +
Sbjct: 466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE) HSP 1 Score: 134 bits (338), Expect = 7.330e-37 Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVD--CEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
GGD DELR+ ST T + +R HGGSL F +T V SWD T SP + DGRS+I+ +SE + D CEG A+N GE RMDI +SE+GYLGY+DSESYGLTWKVRGFC D
Sbjct: 19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 134 bits (337), Expect = 5.320e-36 Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDDGRSFINCVSEYASTVD--CEGMAQNDYGECRMDIINSEMGYLGYYDSESYGLTWKVRGFCID 333
GGD DELR+ ST T Y +R HGGSL F T V SWD T SP + DGRS+I+ +SE + D CEG A+N GE RMDI NSE+GYLG+ DSESYGLTWKVRGFC D
Sbjct: 128 GGDADELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKD 238 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig72.18409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig72.18409.1 >prot_F-serratus_M_contig72.18409.1 ID=prot_F-serratus_M_contig72.18409.1|Name=mRNA_F-serratus_M_contig72.18409.1|organism=Fucus serratus male|type=polypeptide|length=111bp LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTNYDback to top mRNA from alignment at F-serratus_M_contig72:289973..290305- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig72.18409.1 ID=mRNA_F-serratus_M_contig72.18409.1|Name=mRNA_F-serratus_M_contig72.18409.1|organism=Fucus serratus male|type=mRNA|length=333bp|location=Sequence derived from alignment at F-serratus_M_contig72:289973..290305- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig72:289973..290305- >mRNA_F-serratus_M_contig72.18409.1 ID=mRNA_F-serratus_M_contig72.18409.1|Name=mRNA_F-serratus_M_contig72.18409.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig72:289973..290305- (Fucus serratus male)back to top |