mRNA_F-serratus_M_contig7.18113.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18113.1
Unique NamemRNA_F-serratus_M_contig7.18113.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: D7FV70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV70_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 3.160e-94
Identity = 175/234 (74.79%), Postives = 187/234 (79.91%), Query Frame = 2
Query:  158 MPKGGRLVFKGGEPAMSSRGKKKDKLKXXXXXXXXXXXXEGGFSSTAAGGEGEEREGGESLGAGAVDEQQLQPLEEEMRPVSGTGRITSSGTAVQGHEAKFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAGGKRLVYRERTPQGNYRIIERTVDEAMTREQMLEMRSKKKADRHCN 859
            MPKGGRLVFKGGE A+SSRGKKKDKL XXXXXXXXXXX      ST         E                    EMRPVSGTGRITSSGTAV GHEAKFMDELH+GDAILITHPTTLREETRI+KMVLSNMSI ISSPFSSDLISTT FR+I+APR+E+SAE K EE K++K QEEDSAFGTYAGAGGKRLVYRERTP GNYRIIE TVDEAMTRE+ML+MR+ KKADRHCN
Sbjct:    1 MPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXX----XXSTG--------EAAXXXXXXXXXXXXXXXXXXEMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEERKKRKVQEEDSAFGTYAGAGGKRLVYRERTPAGNYRIIETTVDEAMTREEMLDMRATKKADRHCN 222          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A835Z5I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 5.260e-47
Identity = 89/159 (55.97%), Postives = 118/159 (74.21%), Query Frame = 2
Query:  386 EMRPVSGTGRITSSGTAVQGHEAKFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLEMRSKKKADRHC 856
            E+RPV+GTGRI+SSGT V GH  +FM EL AGDA+++THPT+L +ETR+V+MVLS+   G+SS FS+DLISTT F+++ APR E  AE     AKR + QEED AFGTY+  GG ++VYR +     G Y I+     ++MTRE++L +RSKKKADR+C
Sbjct:   33 ELRPVAGTGRISSSGTVVTGHGTRFMSELRAGDALIVTHPTSLAQETRLVRMVLSDAHAGVSSAFSTDLISTTAFQYVSAPRGE--AEDPAVAAKRARLQEEDRAFGTYSSGGGSKVVYRVKKAGVYGGYEIVTADSKKSMTREELLNVRSKKKADRYC 189          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A024UEL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEL5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 8.240e-40
Identity = 84/159 (52.83%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  398 VSGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGA--GGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLEMRSKKKADRHCN 859
            + GTGRI +SGT V G    KF  EL  GDA++I HPT+L+EETRIVKMVLS++S+ ISSPFSSDL+STT F +I+AP  E+  +A + + + +K  EE SAFGTYAG    G    YR +     G Y II+ T D   +RE++L++RSK+K DRHCN
Sbjct:   53 LQGTGRILTSGTTVMGKMGTKFFHELSIGDALIINHPTSLKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDAVESKKRSKKNDEEASAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHCN 211          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A7S2S051_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S051_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.750e-39
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 2
Query:  398 VSGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAGGKRLVYRERTPQ--GNYRI-IERTVDEAMTREQMLEMRSKKKADRHC 856
            V+G GRI++SGT V GHE  +FM +L  GDA++ITHPTT+ +ETRIVKMVLS++S+ ISSPFSSDLIST +FRF++AP  E+  EA + + K++    E  AFGTYAG  G + VYRE+     G Y I +E T D + T   +LEMR+ KKADR C
Sbjct:   65 VAGKGRISTSGTTVHGHEGTQFMKQLKHGDAVIITHPTTMMDETRIVKMVLSDVSMSISSPFSSDLISTVEFRFVKAPEEEVDYEAIENQKKQKLLDTEKEAFGTYAGDLGTKFVYREKKAGAFGGYAIRVEDTADRSRT--DLLEMRAGKKADRFC 219          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: W4H648_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H648_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.190e-38
Identity = 81/159 (50.94%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  398 VSGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAG--AGGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLEMRSKKKADRHCN 859
            + GTGRI +SGT V G    KF  EL  GDA++I HPT+++EETRIVKMVLS++SI ISSPFSSDL+STT F +I+AP  E+  +A + + + +K +EE  AFGTYAG  + G    YR +     G Y +++ T D   +RE +L++RSK+K DRHCN
Sbjct:   52 LQGTGRILTSGTTVMGKMGTKFYHELSIGDALIIMHPTSMKEETRIVKMVLSDVSISISSPFSSDLVSTTTFSYIKAPPEEIDQDAIETKKRSKKNEEETFAFGTYAGGTSAGSEFTYRVKKAGAYGGYAVLKETADANRSREDLLDIRSKRKGDRHCN 210          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A1V9YA44_9STRA (Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA44_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.760e-38
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 2
Query:  386 EMRPVSGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGA--GGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLEMRSKKKADRHCN 859
            E+  V GTGRI +SGT V G    +F  EL  GDA++I HPT+L+EETRIV+MVLS++SI ISS FSSDL+STT F +I+AP        K+   K+QK  EE  AFGTYAG    G +L YR +     G Y II+ T D + +RE++L++RSK K DRHCN
Sbjct:   50 ELVKVQGTGRILTSGTTVMGKMGTRFASELSVGDAMIIVHPTSLQEETRIVRMVLSDVSISISSAFSSDLVSTTTFHYIKAPPDXXXXAQKELATKKQKKDEEGFAFGTYAGGTTAGSQLTYRVKKSGVYGGYTIIKETADTSRSREELLDLRSKMKGDRHCN 212          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A7S2D383_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D383_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.960e-38
Identity = 82/156 (52.56%), Postives = 110/156 (70.51%), Query Frame = 2
Query:  401 SGTGRITSSGTAVQGHE-AKFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAGGKRLVYRERTP--QGNYRIIERTVDEA-MTREQMLEMRSKKKADRHC 856
            +G+GRI++SGT V GH+ ++FMDELH GDAI++THP +L +ETRI+ MVLSN+S+ +SS FSSDLIST+ FRF+  PR E+     +   ++++   E  AFGTYAG  G++ VYRER P   G Y I      EA  +R ++L MRSKKKADR C
Sbjct:   39 TGSGRISTSGTIVTGHDGSRFMDELHNGDAIIVTHPASLIDETRIITMVLSNVSMNMSSAFSSDLISTSDFRFVNQPREEVDHTIAESRKRQKRVDGEKDAFGTYAGDLGEKFVYRERKPGVYGGYYICSEDNGEAPKSRGELLNMRSKKKADRMC 194          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A7S3ZK63_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZK63_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.450e-38
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  401 SGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAGGKRLVYRERTP-----QGNYRIIERTVDEAMTREQML 820
            +G+GRI+SSGTAV+GH+  +FM EL AGDA++ITHPTTL EETRIVKMVLS++SI ISS FSSDL+STT FR++ APRVE SA  K+ +A +++   ED A G YAG GG  LVYR R          ++I+   + E  TR ++L
Sbjct:   67 AGSGRISSSGTAVRGHDGTRFMAELRAGDAVVITHPTTLTEETRIVKMVLSDVSIAISSAFSSDLVSTTAFRYVAAPRVEQSAADKERDAAQRRVLREDGAVGDYAGGGGTTLVYRTRKKGAVGGSNGWKIVTEKLAEPKTRTELL 212          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A485LKB6_9STRA (Aste57867_21986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKB6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.550e-38
Identity = 84/168 (50.00%), Postives = 111/168 (66.07%), Query Frame = 2
Query:  374 PLEEEMR--PVSGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGA--GGKRLVYRERTP--QGNYRIIERTVDEAMTREQMLEMRSKKKADRHC 856
            P EEE +   V GTGRI +SGT V G    +F  EL  GDA++I HPT+L+EETRI+ MVLS++S+ ISSPFS+DL+STT F +I+AP+ E+     + + KR+K  EE  AFGTYAG    G    YR +     G Y I++ T D   +RE +L++RSKKK DRHC
Sbjct:   45 PAEEEFQLVKVQGTGRILTSGTTVMGKMGTRFSHELSIGDALIIVHPTSLKEETRIITMVLSDVSVSISSPFSTDLVSTTTFSYIKAPKEEVDVADLENKKKRKKNDEELFAFGTYAGGTTAGTEFTYRVKKAGVYGGYAILKETADSNRSREDLLDIRSKKKGDRHC 212          
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Match: A0A6G0XV17_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV17_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.590e-37
Identity = 83/166 (50.00%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  374 PLEEEMRPVSGTGRITSSGTAVQGHEA-KFMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTKFRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAG--GKRLVYRERTP--QGNYRIIERTVDEAMTREQMLEMRSKKKADRHC 856
            P E ++  + G+GRI +SGT V G    +F  EL  GDA++I HPT+L+EETRIV MVLS++SI ISSPFSSDLISTT F +I+AP  E+  +  + + +R+  QEE  AFGTYAG    G    YR +     G Y I++ T D   +RE++L++RSKKK DRHC
Sbjct:   46 PEEFQLVKLQGSGRILTSGTTVMGKMGTRFSHELSIGDALIILHPTSLKEETRIVTMVLSDVSISISSPFSSDLISTTTFSYIKAPPEEVDKDELETKKRRKNEQEESFAFGTYAGGTTVGTEYTYRVKKSGAYGGYAIVKETADSNRSREELLDIRSKKKGDRHC 211          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV70_ECTSI3.160e-9474.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5I8_9STRA5.260e-4755.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024UEL5_9STRA8.240e-4052.83Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2S051_9STRA5.750e-3954.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4H648_9STRA1.190e-3850.94Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1V9YA44_9STRA1.760e-3852.15Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2D383_9STRA2.960e-3852.56Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3ZK63_9STRA3.450e-3855.48Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A485LKB6_9STRA3.550e-3850.00Aste57867_21986 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XV17_9STRA2.590e-3750.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:61228..63951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.2
Seed ortholog evalue1.3e-77
Seed eggNOG ortholog2880.D7FV70
Hectar predicted targeting categoryother localisation
EggNOG OGs2A1XA@1,2RY1S@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_007330.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1258
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18113.1prot_F-serratus_M_contig7.18113.1Fucus serratus malepolypeptideF-serratus_M_contig7 61385..63555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932134.9328444-UTR-F-serratus_M_contig7:61227..613841622932134.9328444-UTR-F-serratus_M_contig7:61227..61384Fucus serratus maleUTRF-serratus_M_contig7 61228..61384 +
1690964164.7392929-UTR-F-serratus_M_contig7:61227..613841690964164.7392929-UTR-F-serratus_M_contig7:61227..61384Fucus serratus maleUTRF-serratus_M_contig7 61228..61384 +
1622932135.016874-UTR-F-serratus_M_contig7:63555..639511622932135.016874-UTR-F-serratus_M_contig7:63555..63951Fucus serratus maleUTRF-serratus_M_contig7 63556..63951 +
1690964164.7833393-UTR-F-serratus_M_contig7:63555..639511690964164.7833393-UTR-F-serratus_M_contig7:63555..63951Fucus serratus maleUTRF-serratus_M_contig7 63556..63951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932134.9517617-CDS-F-serratus_M_contig7:61384..617371622932134.9517617-CDS-F-serratus_M_contig7:61384..61737Fucus serratus maleCDSF-serratus_M_contig7 61385..61737 +
1690964164.7528806-CDS-F-serratus_M_contig7:61384..617371690964164.7528806-CDS-F-serratus_M_contig7:61384..61737Fucus serratus maleCDSF-serratus_M_contig7 61385..61737 +
1622932134.973747-CDS-F-serratus_M_contig7:62064..622391622932134.973747-CDS-F-serratus_M_contig7:62064..62239Fucus serratus maleCDSF-serratus_M_contig7 62065..62239 +
1690964164.7620254-CDS-F-serratus_M_contig7:62064..622391690964164.7620254-CDS-F-serratus_M_contig7:62064..62239Fucus serratus maleCDSF-serratus_M_contig7 62065..62239 +
1622932134.9957361-CDS-F-serratus_M_contig7:63378..635551622932134.9957361-CDS-F-serratus_M_contig7:63378..63555Fucus serratus maleCDSF-serratus_M_contig7 63379..63555 +
1690964164.7724984-CDS-F-serratus_M_contig7:63378..635551690964164.7724984-CDS-F-serratus_M_contig7:63378..63555Fucus serratus maleCDSF-serratus_M_contig7 63379..63555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18113.1

>prot_F-serratus_M_contig7.18113.1 ID=prot_F-serratus_M_contig7.18113.1|Name=mRNA_F-serratus_M_contig7.18113.1|organism=Fucus serratus male|type=polypeptide|length=235bp
MPKGGRLVFKGGEPAMSSRGKKKDKLKRKRDKALARAEAEGGFSSTAAGG
EGEEREGGESLGAGAVDEQQLQPLEEEMRPVSGTGRITSSGTAVQGHEAK
FMDELHAGDAILITHPTTLREETRIVKMVLSNMSIGISSPFSSDLISTTK
FRFIRAPRVELSAEAKKEEAKRQKTQEEDSAFGTYAGAGGKRLVYRERTP
QGNYRIIERTVDEAMTREQMLEMRSKKKADRHCN*
back to top

mRNA from alignment at F-serratus_M_contig7:61228..63951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18113.1 ID=mRNA_F-serratus_M_contig7.18113.1|Name=mRNA_F-serratus_M_contig7.18113.1|organism=Fucus serratus male|type=mRNA|length=2724bp|location=Sequence derived from alignment at F-serratus_M_contig7:61228..63951+ (Fucus serratus male)
TTCCGAGAGGTTAGCGATCTTAGCGGAGAAGCCTCCATTCTGCTCCCCGC TCCCGTCGCAATCGGACGACCACAGCGCGCGCGCCACGCCCCAGGTGTTG GGAGTCTTCTTTAGTAAGTCATCACTCAATCGATCGATAGATCGGCAGAC CGCCATCATGCCCAAAGGAGGTAGGCTCGTATTCAAGGGTGGCGAACCCG CGATGTCTTCGAGGGGTAAGAAGAAAGACAAGCTAAAGCGGAAACGGGAC AAGGCCTTGGCGAGGGCAGAGGCCGAGGGTGGTTTCTCCTCCACAGCAGC CGGAGGGGAAGGAGAAGAAAGAGAGGGTGGGGAATCACTGGGTGCTGGTG CTGTAGATGAGCAACAGCTACAGCCACTGGAGGAGGAGATGAGGCCCGTG TCTGGGACAGGCCGAATAACCTCGTCCGGCACTGCCGTCCAGGGACACGA GGCCAAGTTCATGGATGAGCTGCATGCTGGAGACGCCATCCTTATCACGC ATCCTACAACGTGAGAGTAAGGAAAAGAGGAAAGGGATAGTGTGTGAGCA GGGCGGGTCGTACAAAAAGGCGATCATTTGCTTGCTTGTATATGCCCCAA AGAGGTGATGCCATGGCCTATCTGCAATATATATGCTCCAAAGAGATGGT GCCATGGCCTGTCTGCTTGTATATGCTCCAAAGAGGTGATGCCAGCCCTC TTGTTACTTGTTTAGACTATTATAGAGGTACAGCAATGAACATTGCTGCT GGAGAAACAACTTATCTCACTGCGGTACAAGTAGTACCGAGTACCGATGT CTGCTGTGCAAACAAAATGTTGGCTCGACGACGCCAGGTTGCGAGAAGAA ACCCGCATCGTAAAGATGGTTTTGAGCAACATGTCAATCGGGATCAGCAG TCCCTTTAGCTCCGACCTCATCTCCACGACGAAGTTCCGTTTCATAAGAG CACCGCGAGTGGAGCTCAGCGCCGAGGCGAAGAAGGAGGAGGCCAAGCGA CAGAAAACACAGGTACTGTGTGTGTCACTCGTCTCTCCAAGACTCACCTA CCATTCCAGGCGCCTTGTTAATGCAATTTCTGTGCAAATGAGAATTTTTT CAGGAAACAGCACAATGTTATGATGATTGGTCTGGAATCCCCCCGCATTG GATAACAACCTAGGGGTATAATATGGTTTTGTAGGATGTCCGTTCTGGGA TTTTGTTGTAAGGGGAGCGTTTACTGTTTGGTGTGGACACGTCGACTCAG CACTCAGCTCTCCCAAGGATGTAACGAAGAAATGTTAAAGAGAGAAACCA TGGGACCCACAGCACAAAGCAGCCCTCCAAGGTGACGAACAACTACTACG CGTGCGATCATTGTGAATGTCCCTGCCTTAAGTCATCATTAACCCTTTTG GTACTATCGGTCTGACAACGGCTATTTTTTTTGTCTTGACAGTCCTGTGC TGCTCGCGCTACTTTACATGGGCCAGCCACCATGATCACTAATTTTACAG TACAATGTTTACACACCCCAAGTAGTATAGCCTTCTTCGTCTCTAACTGT TGGTGTTAAGCGATTGTTAGTACCAAACTAGTACGAGATTTTTCAGGAAA GCTGTAGTAAAGTCAAGTGAAGAACAAAGTTGGTTTGGGGTTTACATTTT GTACCGTGCACAGTTTTGCGGGGTTGATTCATGGTAGATCCTCGCTGAGC CGTATCTTGGGACTGCTTTTAGTTTGGGAAGGTGCTGTACTCGGGCTCCG GACCTCGCTGCCCAATCAAGGCTGGAAAATAAACAGGCGGTCGACCGCCT GTTAAGCCCTCTCAAGTACCAAAGGGGTTAAAACAAGCTGTCCTCTCTCC AAGTACTACCGGTTCACGGAATCTCTCGTGCAAATTTCTCTCTCTCAGAT GATGTGCAAGACGTGCAGTGCACAACGTACTGCTCGTCCGAAGTAGCCCC AAATCGTTGTTAAGTGAAGTACTTACAGTACTGTAGCTCGGTGGCCCAAC GTTGTCATCCTCTCGGTGGCACATAACCGTAGTCTGGTGGCCTCGGACAT ACCAAAACTAAAACGCGAAAGACTCGTGTGTCGAAAGCTTCGAGAGGCAT CCACTGATTGGACACACTTTTTATTGTTTATCGTTCGTGCGAGGTTCGCA GGAGGAAGACAGCGCTTTCGGCACGTACGCAGGCGCAGGCGGCAAGCGTT TGGTCTACCGAGAACGCACGCCCCAGGGCAACTACCGCATTATTGAGCGG ACTGTCGATGAGGCCATGACCCGAGAGCAAATGCTAGAGATGCGGAGTAA GAAGAAGGCCGATCGACACTGCAACTAATTTGAAAGAGTTACTCGTAGTT AATGCCGTAAACGCTGTAAATACTACATTATTTACAAGAGTATAAAACTT ATCACGGAGATTCGTGATGCAGGTGTGCATGTGGAAGGACATTAATAGGA ATGGAATCTTATTCCGGAAAGCTGTTCAACTATGAACGAAGAAAAACTGG GTGGAGTTAGGCGGAAGTTTGATGAAAAATTTCACCATGGAGTTCTAACC GAGGTACTACCAACCGTAGTGAAATATTGAAATGTGATTGCTCAACATTC TACAGGATGTGTGGGATGTGATATCATGACTGATGGCAAGAGTTTGGATC AACCGAGCAAGGTTGTCAATTCTGCTCATGGTCAACTGTCAGGGGAAATC ATTGTTTTTTCTGTTTTTGTTCGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7:61228..63951+

>mRNA_F-serratus_M_contig7.18113.1 ID=mRNA_F-serratus_M_contig7.18113.1|Name=mRNA_F-serratus_M_contig7.18113.1|organism=Fucus serratus male|type=CDS|length=1410bp|location=Sequence derived from alignment at F-serratus_M_contig7:61228..63951+ (Fucus serratus male)
ATGCCCAAAGGAGGTAGGCTCGTATTCAAGGGTGGCGAACCCGCGATGTC
TTCGAGGGGTAAGAAGAAAGACAAGCTAAAGCGGAAACGGGACAAGGCCT
TGGCGAGGGCAGAGGCCGAGGGTGGTTTCTCCTCCACAGCAGCCGGAGGG
GAAGGAGAAGAAAGAGAGGGTGGGGAATCACTGGGTGCTGGTGCTGTAGA
TGAGCAACAGCTACAGCCACTGGAGGAGGAGATGAGGCCCGTGTCTGGGA
CAGGCCGAATAACCTCGTCCGGCACTGCCGTCCAGGGACACGAGGCCAAG
TTCATGGATGAGCTGCATGCTGGAGACGCCATCCTTATCACGCATCCTAC
AACATGCCCAAAGGAGGTAGGCTCGTATTCAAGGGTGGCGAACCCGCGAT
GTCTTCGAGGGGTAAGAAGAAAGACAAGCTAAAGCGGAAACGGGACAAGG
CCTTGGCGAGGGCAGAGGCCGAGGGTGGTTTCTCCTCCACAGCAGCCGGA
GGGGAAGGAGAAGAAAGAGAGGGTGGGGAATCACTGGGTGCTGGTGCTGT
AGATGAGCAACAGCTACAGCCACTGGAGGAGGAGATGAGGCCCGTGTCTG
GGACAGGCCGAATAACCTCGTCCGGCACTGCCGTCCAGGGACACGAGGCC
AAGTTCATGGATGAGCTGCATGCTGGAGACGCCATCCTTATCACGCATCC
TACAACGTTGCGAGAAGAAACCCGCATCGTAAAGATGGTTTTGAGCAACA
TGTCAATCGGGATCAGCAGTCCCTTTAGCTCCGACCTCATCTCCACGACG
AAGTTCCGTTTCATAAGAGCACCGCGAGTGGAGCTCAGCGCCGAGGCGAA
GAAGGAGGAGGCCAAGCGACAGAAAACACAGGTTGCGAGAAGAAACCCGC
ATCGTAAAGATGGTTTTGAGCAACATGTCAATCGGGATCAGCAGTCCCTT
TAGCTCCGACCTCATCTCCACGACGAAGTTCCGTTTCATAAGAGCACCGC
GAGTGGAGCTCAGCGCCGAGGCGAAGAAGGAGGAGGCCAAGCGACAGAAA
ACACAGGAGGAAGACAGCGCTTTCGGCACGTACGCAGGCGCAGGCGGCAA
GCGTTTGGTCTACCGAGAACGCACGCCCCAGGGCAACTACCGCATTATTG
AGCGGACTGTCGATGAGGCCATGACCCGAGAGCAAATGCTAGAGATGCGG
AGTAAGAAGAAGGCCGATCGACACTGCAACTAAGAGGAAGACAGCGCTTT
CGGCACGTACGCAGGCGCAGGCGGCAAGCGTTTGGTCTACCGAGAACGCA
CGCCCCAGGGCAACTACCGCATTATTGAGCGGACTGTCGATGAGGCCATG
ACCCGAGAGCAAATGCTAGAGATGCGGAGTAAGAAGAAGGCCGATCGACA
CTGCAACTAA
back to top