mRNA_F-serratus_M_contig6988.18100.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: D8LMC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC0_ECTSI) HSP 1 Score: 108 bits (271), Expect = 4.270e-26 Identity = 64/136 (47.06%), Postives = 76/136 (55.88%), Query Frame = 2
Query: 2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
GKFLEMVRQQLS + F R + S ++ + +FSFY LIVT+ARGKSGPLFH DVHDDIR+VH TR+E+D+SHPGK YDP DY T T HGGE+N K
Sbjct: 231 GKFLEMVRQQLS-------------QDFSEMRSVSSENLLYIKEDLIIPHHFSFYDLIVTKARGKSGPLFHFDVHDDIRLVHDTRIEKDESHPGKIVERRWYERNKHIFPASRWETYDPQKDYGTYTIHGGEVNEK 353
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A835Z3T7_9STRA (XAP5, circadian clock regulator-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.010e-19 Identity = 57/136 (41.91%), Postives = 69/136 (50.74%), Query Frame = 2
Query: 2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
GKFLE VRQQLS F R S ++ + ++SFY LIVT+ARGKSGPLFH DV DD+R++H VE+D+SHPGK YDP DY TTHG E+N K
Sbjct: 239 GKFLEAVRQQLSTD-------------FSELRATSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVFDDVRLIHDATVEKDESHPGKVVERRWYERSKHIFPASRWEVYDPSKDYGDYTTHGREVNEK 361
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A7S2G6N3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6N3_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.060e-17 Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 2
Query: 143 FSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINA 331
++FY LI ++ARGKSGPLFH DVHDD+R+ + +RVE+D+SHPGK YDP + T T HGGE+NA
Sbjct: 82 YTFYDLIASKARGKSGPLFHFDVHDDVRLTNDSRVEKDESHPGKIVERHWYERNKHIFPASRWEVYDPSVERGTYTIHGGEVNA 165
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A8K1FHX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHX8_PYTOL) HSP 1 Score: 84.0 bits (206), Expect = 8.820e-17 Identity = 51/136 (37.50%), Postives = 70/136 (51.47%), Query Frame = 2
Query: 2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
KFL++VRQQL F R + S ++ + +N+SFY LIVT+ARGKSGPLFH DVH+D+R+++ RVE+D+SHPGK YDP T HG E+++K
Sbjct: 225 SKFLDLVRQQLVTE-------------FTELRGVSSDNLIYVKEDLIIPQNYSFYDLIVTKARGKSGPLFHFDVHEDVRLINDARVEKDESHPGKVVERHWYEKNKHIFPASRWEMYDPSVKRDKYTIHGDEVSSK 347
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A7S3XP37_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP37_HETAK) HSP 1 Score: 80.1 bits (196), Expect = 1.170e-16 Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 2
Query: 140 NFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHY-TRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
NFSFY LI T+ARGKSGPLFH DVHDD+R+ TR+E+D+SHPGK ++P D+ T T HGGEI K
Sbjct: 64 NFSFYDLIATKARGKSGPLFHFDVHDDLRLGPVDTRIEKDESHPGKVLQRSWYERNKHIFPASRWEVWEPGKDFGTYTIHGGEIYTK 150
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: K3WKT1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKT1_GLOUD) HSP 1 Score: 80.5 bits (197), Expect = 1.310e-15 Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 2
Query: 2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGW----KNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK 274
GK+LE+V+QQL F R + S ++ + ++SFY LIVT+ARGKSGPLFH DVH+D+R++H RVE+D+SHPGK
Sbjct: 218 GKYLELVKQQLV-------------NEFAELRGVSSDNLLYVKEDLIIPHSYSFYDLIVTKARGKSGPLFHFDVHEDVRLIHDARVEKDESHPGK 299
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A0G4GK24_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GK24_9ALVE) HSP 1 Score: 80.5 bits (197), Expect = 1.660e-15 Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query: 146 SFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
SFY LI ++ARGKSGPLFH DVHDDIR++ TRVE+D+SH GK YDP+ + T T HG E+NAK
Sbjct: 265 SFYELIRSKARGKSGPLFHFDVHDDIRLMSDTRVEKDESHAGKIVDRKWYDRNKHIFPASRWEVYDPNKTFETYTVHGREVNAK 348
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A1V9ZGH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGH8_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.440e-15 Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 2
Query: 2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGWKNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK 274
GKFLE+VR+ L+ R ++ + I N SFY LIVT+ARGKSGPLFH DVHDDIR+V+ RVE+D+SHPGK
Sbjct: 206 GKFLELVRKDLAAEFPDVRTVSVDNLMYIKEDLIIPH---------NLSFYDLIVTKARGKSGPLFHFDVHDDIRLVNDVRVEKDESHPGK 287
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A2D4BPT8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPT8_PYTIN) HSP 1 Score: 79.7 bits (195), Expect = 2.550e-15 Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 2
Query: 140 NFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK---------------------YDPHTDYSTCTTHGGEINAK 334
++SFY LIVTRARGKSGPLFH DVH+D+R+V+ RVE+D+SHPGK YDP T HG E++ K
Sbjct: 236 HYSFYDLIVTRARGKSGPLFHFDVHEDVRLVNDARVEKDESHPGKVVERHWYEKNKHIFPASRWEVYDPSVKREKYTIHGDEVSRK 321
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Match: A0A0N7L3S6_PLAHL (Protein xap5 circadian timekeeper-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3S6_PLAHL) HSP 1 Score: 79.3 bits (194), Expect = 3.910e-15 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 2 GKFLEMVRQQLSCPRIPPR*GALAPKTFCTSRKI*SFRIVMARGWKNFSFYHLIVTRARGKSGPLFHLDVHDDIRIVHYTRVEEDKSHPGK 274
GK+LE+V+QQL P A K + I+ ++SFY LIVT+ARGKSGPLFH DVHDD+R+V R+++D+SHPGK
Sbjct: 217 GKYLELVKQQL-VPEFAELRSVSAEKLIYVKEDL----IIP----HHYSFYDLIVTKARGKSGPLFHFDVHDDVRLVQDRRIQKDESHPGK 298 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6988.18100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6988.18100.1 >prot_F-serratus_M_contig6988.18100.1 ID=prot_F-serratus_M_contig6988.18100.1|Name=mRNA_F-serratus_M_contig6988.18100.1|organism=Fucus serratus male|type=polypeptide|length=100bp MRSASAENLLYIKEDLIIPHRHGAWLEELLFLPPDRHKGQGKVRPAVPLRback to top mRNA from alignment at F-serratus_M_contig6988:9069..10147- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6988.18100.1 ID=mRNA_F-serratus_M_contig6988.18100.1|Name=mRNA_F-serratus_M_contig6988.18100.1|organism=Fucus serratus male|type=mRNA|length=1079bp|location=Sequence derived from alignment at F-serratus_M_contig6988:9069..10147- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6988:9069..10147- >mRNA_F-serratus_M_contig6988.18100.1 ID=mRNA_F-serratus_M_contig6988.18100.1|Name=mRNA_F-serratus_M_contig6988.18100.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig6988:9069..10147- (Fucus serratus male)back to top |